Wall clock time and date at job start Tue Mar 31 2020 22:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00102 * 2 1 4 4 H 1.09005 * 110.35283 * 27.85637 * 3 2 1 5 5 C 1.54297 * 110.47806 * 265.63479 * 3 2 1 6 6 N 1.47895 * 107.08623 * 242.53089 * 5 3 2 7 7 C 1.46903 * 111.00289 * 214.00340 * 6 5 3 8 8 C 1.50691 * 109.47330 * 307.40060 * 7 6 5 9 9 O 1.21300 * 119.99958 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00242 * 179.97438 * 8 7 6 11 11 C 1.37104 * 120.00307 * 179.97438 * 10 8 7 12 12 H 1.08000 * 119.99745 * 0.02562 * 11 10 8 13 13 C 1.38948 * 119.99960 * 179.97438 * 11 10 8 14 14 N 1.31410 * 119.99707 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00329 * 0.02562 * 13 11 10 16 16 H 1.48492 * 109.47272 * 89.99477 * 15 13 11 17 17 H 1.48503 * 109.47021 * 209.99746 * 15 13 11 18 18 H 1.48507 * 109.46764 * 329.99309 * 15 13 11 19 19 C 1.48527 * 105.82360 * 334.52306 * 6 5 3 20 20 C 1.54598 * 110.31171 * 149.99952 * 3 2 1 21 21 H 1.08999 * 110.71788 * 22.33479 * 20 3 2 22 22 N 1.46500 * 110.72204 * 259.23013 * 20 3 2 23 23 C 1.34776 * 119.99845 * 157.44472 * 22 20 3 24 24 O 1.21281 * 120.00227 * 0.02562 * 23 22 20 25 25 C 1.50701 * 120.00175 * 180.02562 * 23 22 20 26 26 H 1.09002 * 109.47060 * 60.00522 * 25 23 22 27 27 C 1.52997 * 109.47212 * 300.00467 * 25 23 22 28 28 C 1.53002 * 109.47419 * 180.02562 * 25 23 22 29 29 C 1.53001 * 117.49910 * 248.62497 * 28 25 23 30 30 C 1.52994 * 117.50126 * 180.02562 * 28 25 23 31 31 H 1.08999 * 109.47314 * 300.00314 * 1 2 3 32 32 H 1.09001 * 109.47054 * 60.00264 * 1 2 3 33 33 H 1.09005 * 109.47330 * 180.02562 * 1 2 3 34 34 H 1.09007 * 110.02950 * 123.10306 * 5 3 2 35 35 H 1.08997 * 109.94274 * 1.91715 * 5 3 2 36 36 H 1.09003 * 109.46324 * 67.39942 * 7 6 5 37 37 H 1.08996 * 109.47333 * 187.39360 * 7 6 5 38 38 H 0.97000 * 120.00456 * 0.02562 * 10 8 7 39 39 H 0.97003 * 119.99932 * 180.02562 * 14 13 11 40 40 H 1.09002 * 110.66894 * 280.77248 * 19 6 5 41 41 H 1.09005 * 110.81513 * 157.70633 * 19 6 5 42 42 H 0.96995 * 120.00424 * 337.45702 * 22 20 3 43 43 H 1.09002 * 109.47153 * 299.99998 * 27 25 23 44 44 H 1.08998 * 109.47533 * 59.99628 * 27 25 23 45 45 H 1.08996 * 109.47853 * 179.97438 * 27 25 23 46 46 H 1.09007 * 115.54675 * 34.32560 * 28 25 23 47 47 H 1.09004 * 117.49564 * 359.97438 * 29 28 25 48 48 H 1.08997 * 117.50086 * 145.01519 * 29 28 25 49 49 H 1.09000 * 117.49953 * 214.97795 * 30 28 25 50 50 H 1.09001 * 117.49780 * 359.97438 * 30 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3390 2.0193 0.4775 5 6 2.3303 1.7538 -1.4413 6 7 3.7955 1.9365 -1.5242 7 6 4.1382 3.0372 -2.4347 8 6 3.4586 2.8211 -3.7622 9 8 2.7581 1.8458 -3.9333 10 7 3.6292 3.7115 -4.7594 11 6 3.0113 3.5147 -5.9674 12 1 2.3875 2.6462 -6.1197 13 6 3.1867 4.4330 -6.9953 14 7 2.5941 4.2445 -8.1530 15 14 4.2650 5.9354 -6.7317 16 1 5.6634 5.6144 -7.1143 17 1 3.7670 7.0553 -7.5702 18 1 4.2215 6.3309 -5.3010 19 6 4.2460 2.2309 -0.1399 20 6 3.3755 1.2849 0.7249 21 1 3.7923 0.2778 0.7339 22 7 3.2458 1.8025 2.0893 23 6 4.1549 1.4677 3.0263 24 8 5.0805 0.7383 2.7399 25 6 4.0212 1.9996 4.4300 26 1 3.0725 1.6709 4.8543 27 6 4.0649 3.5287 4.4023 28 6 5.1737 1.4723 5.2872 29 6 4.8322 0.4673 6.3890 30 6 5.2163 1.9018 6.7550 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8258 2.6950 -1.6602 35 1 2.0109 0.9882 -2.1484 36 1 3.8040 3.9815 -2.0049 37 1 5.2181 3.0660 -2.5797 38 1 4.1896 4.4913 -4.6229 39 1 2.7168 4.8854 -8.8707 40 1 4.0513 3.2728 0.1147 41 1 5.3040 1.9980 -0.0190 42 1 2.5056 2.3860 2.3184 43 1 5.0136 3.8574 3.9780 44 1 3.2441 3.9047 3.7915 45 1 3.9678 3.9135 5.4174 46 1 6.1256 1.3492 4.7706 47 1 3.7864 0.1820 6.5035 48 1 5.5594 -0.3174 6.5976 49 1 6.1965 2.0613 7.2044 50 1 4.4236 2.5604 7.1099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212080955.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:16 Heat of formation + Delta-G solvation = -102.549034 kcal Electronic energy + Delta-G solvation = -30040.608434 eV Core-core repulsion = 25875.084883 eV Total energy + Delta-G solvation = -4165.523551 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.54827 -40.68199 -39.70275 -38.17591 -37.70030 -36.08224 -35.45938 -33.79179 -33.24630 -31.47892 -29.33979 -28.38837 -27.25494 -26.11071 -25.53756 -23.14064 -22.95323 -22.41724 -21.89036 -21.29063 -20.59906 -20.15323 -18.63469 -18.03929 -17.80161 -17.25288 -16.79249 -16.70315 -16.57139 -16.17089 -15.79870 -15.70362 -15.51915 -15.31645 -14.99346 -14.90359 -14.65691 -14.42084 -14.21293 -13.93396 -13.72075 -13.44132 -13.33072 -13.12719 -13.02262 -12.95901 -12.85242 -12.56524 -12.42835 -12.37381 -12.27229 -11.98328 -11.85977 -11.81650 -11.51713 -11.26046 -10.94787 -10.84838 -10.63550 -10.40640 -10.25772 -10.10662 -9.39759 -8.42150 -6.03162 1.29173 1.35406 1.43827 1.63018 1.91025 1.93179 2.22255 2.61099 2.77932 2.95254 3.09399 3.14494 3.48075 3.55561 3.67017 3.74295 3.90363 4.02575 4.11146 4.16050 4.18775 4.20977 4.32013 4.35995 4.40137 4.48425 4.51331 4.53234 4.54901 4.59983 4.74069 4.80787 4.83647 4.85360 4.92543 5.01421 5.09115 5.12621 5.28291 5.31183 5.34303 5.42444 5.51043 5.78140 5.85272 5.97167 6.21241 6.51453 6.57770 6.86751 7.24945 7.37225 7.93882 8.75285 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017010 B = 0.002315 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.659110 B =12091.140223 C =13218.359836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.399 6.399 3 C 0.081 3.919 4 H 0.105 0.895 5 C 0.035 3.965 6 N -0.515 5.515 7 C 0.045 3.955 8 C 0.448 3.552 9 O -0.606 6.606 10 N -0.589 5.589 11 C -0.327 4.327 12 H 0.055 0.945 13 C -0.016 4.016 14 N -0.933 5.933 15 Si 0.965 3.035 16 H -0.259 1.259 17 H -0.275 1.275 18 H -0.229 1.229 19 C 0.036 3.964 20 C 0.153 3.847 21 H 0.081 0.919 22 N -0.706 5.706 23 C 0.518 3.482 24 O -0.578 6.578 25 C -0.069 4.069 26 H 0.118 0.882 27 C -0.139 4.139 28 C -0.154 4.154 29 C -0.187 4.187 30 C -0.158 4.158 31 H 0.067 0.933 32 H 0.037 0.963 33 H 0.095 0.905 34 H 0.046 0.954 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.390 0.610 39 H 0.279 0.721 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.416 0.584 43 H 0.051 0.949 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.102 0.898 48 H 0.087 0.913 49 H 0.098 0.902 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.900 4.279 32.734 33.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.317 6.317 3 C 0.022 3.978 4 H 0.123 0.877 5 C -0.093 4.093 6 N -0.241 5.241 7 C -0.086 4.086 8 C 0.236 3.764 9 O -0.490 6.490 10 N -0.230 5.230 11 C -0.456 4.456 12 H 0.073 0.927 13 C -0.214 4.214 14 N -0.574 5.574 15 Si 0.785 3.215 16 H -0.184 1.184 17 H -0.200 1.200 18 H -0.153 1.153 19 C -0.093 4.093 20 C 0.047 3.953 21 H 0.099 0.901 22 N -0.359 5.359 23 C 0.307 3.693 24 O -0.457 6.457 25 C -0.090 4.090 26 H 0.136 0.864 27 C -0.197 4.197 28 C -0.173 4.173 29 C -0.224 4.224 30 C -0.195 4.195 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.113 0.887 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.138 0.862 38 H 0.225 0.775 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.254 0.746 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.121 0.879 48 H 0.106 0.894 49 H 0.116 0.884 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.386 2.532 31.998 32.128 hybrid contribution -0.420 1.376 -0.841 1.666 sum 0.967 3.907 31.158 31.417 Atomic orbital electron populations 1.23005 0.79343 1.03958 1.00874 1.87965 1.21617 1.27326 1.94827 1.23301 0.94500 0.85862 0.94150 0.87722 1.23256 0.88536 1.00918 0.96615 1.64431 1.12621 1.39963 1.07061 1.22121 1.02393 0.94168 0.89952 1.20791 0.84842 0.83872 0.86921 1.90556 1.43524 1.31693 1.83211 1.42003 1.45772 1.23672 1.11597 1.18981 1.27770 1.09547 0.89285 0.92667 1.26125 0.99093 1.02139 0.94087 1.69805 1.44499 1.38603 1.04492 0.85365 0.78527 0.77028 0.80601 1.18372 1.19956 1.15265 1.23580 1.00465 0.98882 0.86359 1.21543 0.94029 0.98385 0.81362 0.90055 1.45800 1.29878 1.51602 1.08635 1.21229 0.80915 0.79304 0.87898 1.90710 1.34150 1.38331 1.82459 1.20878 1.00233 0.98462 0.89474 0.86367 1.21787 1.02845 0.90637 1.04382 1.21992 0.99340 1.05221 0.90770 1.23096 1.02742 0.93484 1.03090 1.23048 1.03865 0.97221 0.95351 0.91401 0.94459 0.88653 0.93608 0.91430 0.89361 0.86209 0.77472 0.91140 0.90477 0.89537 0.74560 0.92947 0.90372 0.89509 0.89381 0.87922 0.89444 0.88365 0.86749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 10.85 113.37 1.23 1.71 16 2 O -0.40 -11.06 10.31 -148.98 -1.54 -12.60 16 3 C 0.08 1.96 3.22 31.58 0.10 2.06 16 4 H 0.11 1.72 7.41 -2.38 -0.02 1.71 16 5 C 0.04 1.16 4.90 86.55 0.42 1.59 16 6 N -0.52 -16.61 5.26 -886.98 -4.67 -21.28 16 7 C 0.04 1.41 5.48 85.55 0.47 1.88 16 8 C 0.45 20.29 7.35 87.65 0.64 20.93 16 9 O -0.61 -33.45 13.37 -3.09 -0.04 -33.49 16 10 N -0.59 -27.65 5.09 -306.99 -1.56 -29.21 16 11 C -0.33 -19.08 10.16 84.04 0.85 -18.23 16 12 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 13 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 14 N -0.93 -56.20 13.96 21.66 0.30 -55.90 16 15 Si 0.96 38.49 27.74 68.60 1.90 40.39 16 16 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 17 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 18 H -0.23 -7.59 6.52 99.48 0.65 -6.94 16 19 C 0.04 0.86 6.24 86.65 0.54 1.40 16 20 C 0.15 3.64 3.12 46.20 0.14 3.78 16 21 H 0.08 2.56 7.56 -2.39 -0.02 2.54 16 22 N -0.71 -11.38 5.08 -436.84 -2.22 -13.60 16 23 C 0.52 10.17 7.15 87.66 0.63 10.79 16 24 O -0.58 -17.30 15.33 -3.03 -0.05 -17.35 16 25 C -0.07 -0.81 2.88 -11.54 -0.03 -0.85 16 26 H 0.12 0.90 7.90 -2.39 -0.02 0.88 16 27 C -0.14 -0.98 8.93 71.98 0.64 -0.33 16 28 C -0.15 -2.28 4.76 -10.79 -0.05 -2.34 16 29 C -0.19 -2.39 10.17 30.58 0.31 -2.08 16 30 C -0.16 -1.51 9.73 30.58 0.30 -1.21 16 31 H 0.07 0.93 8.11 -2.39 -0.02 0.91 16 32 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.05 1.48 7.59 -2.38 -0.02 1.46 16 35 H 0.07 2.90 6.56 -2.39 -0.02 2.89 16 36 H 0.09 2.16 7.89 -2.39 -0.02 2.14 16 37 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.39 15.07 5.76 -92.71 -0.53 14.53 16 39 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.08 1.41 7.85 -2.39 -0.02 1.39 16 41 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 42 H 0.42 3.59 7.78 -92.71 -0.72 2.87 16 43 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.08 0.28 7.56 -2.39 -0.02 0.27 16 45 H 0.09 0.35 7.29 -2.39 -0.02 0.33 16 46 H 0.09 1.82 7.47 -2.38 -0.02 1.80 16 47 H 0.10 1.09 8.05 -2.38 -0.02 1.07 16 48 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.11 0.64 7.61 -2.39 -0.02 0.62 16 Total: -1.00 -84.85 402.41 -1.56 -86.41 By element: Atomic # 1 Polarization: 38.28 SS G_CDS: -0.36 Total: 37.93 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: 6.67 Total: 18.70 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -8.15 Total: -119.99 kcal Atomic # 8 Polarization: -61.81 SS G_CDS: -1.62 Total: -63.43 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 1.90 Total: 40.39 kcal Total: -84.85 -1.56 -86.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212080955.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.142 kcal (2) G-P(sol) polarization free energy of solvation -84.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds