Wall clock time and date at job start Tue Mar 31 2020 23:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99972 * 2 1 4 4 H 1.09004 * 110.92074 * 26.09480 * 3 2 1 5 5 C 1.55128 * 111.16092 * 262.16626 * 3 2 1 6 6 N 1.47419 * 104.94006 * 205.13017 * 5 3 2 7 7 C 1.36941 * 125.64555 * 204.03350 * 6 5 3 8 8 H 1.08002 * 119.99570 * 161.47542 * 7 6 5 9 9 C 1.38816 * 120.00107 * 341.48508 * 7 6 5 10 10 N 1.31615 * 119.99717 * 157.61856 * 9 7 6 11 11 Si 1.86791 * 119.99904 * 337.61218 * 9 7 6 12 12 H 1.48493 * 109.47295 * 84.54030 * 11 9 7 13 13 H 1.48500 * 109.47036 * 204.54016 * 11 9 7 14 14 H 1.48505 * 109.47458 * 324.53674 * 11 9 7 15 15 C 1.47017 * 108.70709 * 24.00974 * 6 5 3 16 16 C 1.54327 * 107.26986 * 358.93324 * 15 6 5 17 17 H 1.08999 * 110.71305 * 96.35070 * 16 15 6 18 18 N 1.46499 * 110.71726 * 219.44494 * 16 15 6 19 19 C 1.34768 * 120.00217 * 271.15430 * 18 16 15 20 20 O 1.21277 * 120.00361 * 359.73297 * 19 18 16 21 21 C 1.50706 * 120.00148 * 180.02562 * 19 18 16 22 22 C 1.52997 * 109.47342 * 180.02562 * 21 19 18 23 23 H 1.09004 * 109.47189 * 54.99745 * 22 21 19 24 24 C 1.53001 * 109.47285 * 175.00301 * 22 21 19 25 25 N 1.46504 * 109.46954 * 294.99983 * 22 21 19 26 26 C 1.46767 * 124.34905 * 119.99954 * 25 22 21 27 27 C 1.54479 * 105.47218 * 197.01719 * 26 25 22 28 28 C 1.54625 * 101.76685 * 334.58204 * 27 26 25 29 29 C 1.34416 * 124.34942 * 299.70105 * 25 22 21 30 30 O 1.21276 * 124.94576 * 359.56543 * 29 25 22 31 31 H 1.08993 * 109.47182 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47396 * 300.00522 * 1 2 3 33 33 H 1.09002 * 109.46828 * 60.00298 * 1 2 3 34 34 H 1.09000 * 110.41833 * 86.20523 * 5 3 2 35 35 H 1.08996 * 110.29723 * 324.00239 * 5 3 2 36 36 H 0.97003 * 119.99767 * 180.02562 * 10 9 7 37 37 H 1.09005 * 109.87858 * 239.51998 * 15 6 5 38 38 H 1.08998 * 109.88865 * 118.35512 * 15 6 5 39 39 H 0.97008 * 119.99372 * 91.16615 * 18 16 15 40 40 H 1.09000 * 109.46615 * 300.00310 * 21 19 18 41 41 H 1.09000 * 109.46860 * 59.99875 * 21 19 18 42 42 H 1.08999 * 109.47330 * 179.97438 * 24 22 21 43 43 H 1.09001 * 109.46750 * 299.99715 * 24 22 21 44 44 H 1.08997 * 109.46913 * 59.99905 * 24 22 21 45 45 H 1.09007 * 110.24684 * 316.01922 * 26 25 22 46 46 H 1.08997 * 110.24303 * 78.01393 * 26 25 22 47 47 H 1.09002 * 110.96873 * 92.70465 * 27 26 25 48 48 H 1.09001 * 110.96713 * 216.46672 * 27 26 25 49 49 H 1.09004 * 110.48523 * 143.47553 * 28 27 26 50 50 H 1.08999 * 110.48768 * 266.12475 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3332 2.0329 0.4479 5 6 2.4181 1.7368 -1.4332 6 7 3.4967 2.7232 -1.2407 7 6 3.8517 3.7014 -2.1308 8 1 4.4321 4.5493 -1.7982 9 6 3.4655 3.6033 -3.4606 10 7 3.4013 4.6843 -4.2086 11 14 3.0370 1.9371 -4.1881 12 1 1.6179 1.6170 -3.8902 13 1 3.2382 1.9727 -5.6590 14 1 3.9144 0.8968 -3.5936 15 6 4.1276 2.4832 0.0654 16 6 3.3824 1.3033 0.7243 17 1 3.9106 0.3665 0.5470 18 7 3.2108 1.5358 2.1605 19 6 4.1626 1.1352 3.0264 20 8 5.1590 0.5778 2.6172 21 6 3.9859 1.3739 4.5039 22 6 5.2004 0.8281 5.2576 23 1 6.1095 1.2716 4.8513 24 6 5.0802 1.1803 6.7416 25 7 5.2566 -0.6278 5.1041 26 6 6.3766 -1.3535 4.4936 27 6 5.8239 -2.7560 4.1561 28 6 4.6748 -2.8971 5.1811 29 6 4.2915 -1.4709 5.5096 30 8 3.2621 -1.1368 6.0570 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.5730 2.1943 -1.9476 35 1 2.7848 0.8787 -1.9964 36 1 3.1310 4.6157 -5.1377 37 1 4.0384 3.3727 0.6891 38 1 5.1783 2.2279 -0.0718 39 1 2.4120 1.9780 2.4881 40 1 3.8935 2.4438 4.6905 41 1 3.0854 0.8658 4.8488 42 1 5.9452 0.7911 7.2787 43 1 5.0384 2.2635 6.8558 44 1 4.1711 0.7367 7.1478 45 1 6.7031 -0.8479 3.5847 46 1 7.2035 -1.4337 5.1992 47 1 5.4427 -2.7898 3.1355 48 1 6.5829 -3.5225 4.3131 49 1 3.8325 -3.4293 4.7389 50 1 5.0237 -3.4103 6.0771 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213716850.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:06 Heat of formation + Delta-G solvation = -79.529741 kcal Electronic energy + Delta-G solvation = -31306.574916 eV Core-core repulsion = 27142.049556 eV Total energy + Delta-G solvation = -4164.525359 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.82440 -39.69383 -38.38394 -36.47504 -36.21988 -35.01476 -34.13120 -32.03478 -30.41538 -29.41359 -28.42741 -27.61729 -27.32649 -26.33743 -24.14986 -22.82704 -22.07730 -21.28939 -20.81896 -20.03640 -18.90895 -17.51995 -17.08999 -16.78612 -16.76043 -16.43884 -16.06053 -15.55931 -14.98612 -14.83187 -14.62642 -14.32120 -14.10773 -14.02655 -13.84096 -13.76493 -13.53484 -13.09679 -13.00371 -12.95820 -12.80150 -12.22638 -12.13308 -12.09623 -12.06402 -11.87588 -11.67249 -11.49832 -11.33858 -11.31476 -11.20915 -11.13914 -10.71552 -10.50700 -10.09034 -9.79163 -9.71187 -9.53270 -9.36185 -8.92148 -8.79714 -8.65157 -7.13040 -5.99977 -3.31898 2.48620 2.73627 2.89350 3.18505 3.31528 3.46812 3.51056 3.80980 4.19521 4.37069 4.50620 4.57955 4.61917 4.69786 4.84726 4.87539 5.00221 5.06100 5.14647 5.17335 5.26540 5.30577 5.34333 5.35211 5.39325 5.42082 5.45921 5.48978 5.50996 5.63317 5.67418 5.68032 5.71772 5.79736 5.86663 5.90056 5.96015 6.30024 6.37348 6.47182 6.49010 6.56587 6.75471 7.07272 7.33007 7.57589 7.63262 8.09158 8.24869 8.32697 8.76148 9.62206 10.07559 11.15643 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016276 B = 0.003030 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.963007 B = 9240.187663 C = 9641.080405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.378 6.378 3 C 0.067 3.933 4 H 0.077 0.923 5 C 0.098 3.902 6 N -0.604 5.604 7 C -0.244 4.244 8 H 0.095 0.905 9 C 0.024 3.976 10 N -0.906 5.906 11 Si 0.881 3.119 12 H -0.286 1.286 13 H -0.300 1.300 14 H -0.274 1.274 15 C 0.131 3.869 16 C 0.138 3.862 17 H 0.104 0.896 18 N -0.718 5.718 19 C 0.518 3.482 20 O -0.536 6.536 21 C -0.162 4.162 22 C 0.174 3.826 23 H 0.097 0.903 24 C -0.167 4.167 25 N -0.601 5.601 26 C 0.103 3.897 27 C -0.131 4.131 28 C -0.156 4.156 29 C 0.516 3.484 30 O -0.540 6.540 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.043 0.957 34 H 0.064 0.936 35 H 0.039 0.961 36 H 0.264 0.736 37 H 0.039 0.961 38 H 0.042 0.958 39 H 0.398 0.602 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.064 0.936 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.098 0.902 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.964 -12.009 21.202 24.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.296 6.296 3 C 0.008 3.992 4 H 0.095 0.905 5 C -0.028 4.028 6 N -0.332 5.332 7 C -0.371 4.371 8 H 0.113 0.887 9 C -0.175 4.175 10 N -0.549 5.549 11 Si 0.711 3.289 12 H -0.213 1.213 13 H -0.228 1.228 14 H -0.200 1.200 15 C 0.005 3.995 16 C 0.033 3.967 17 H 0.122 0.878 18 N -0.368 5.368 19 C 0.304 3.696 20 O -0.413 6.413 21 C -0.202 4.202 22 C 0.070 3.930 23 H 0.115 0.885 24 C -0.225 4.225 25 N -0.334 5.334 26 C -0.019 4.019 27 C -0.169 4.169 28 C -0.197 4.197 29 C 0.304 3.696 30 O -0.418 6.418 31 H 0.102 0.898 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.232 0.768 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.114 0.886 46 H 0.082 0.918 47 H 0.102 0.898 48 H 0.105 0.895 49 H 0.116 0.884 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.282 -12.174 20.974 24.285 hybrid contribution -0.858 -0.428 -0.567 1.115 sum 0.423 -12.602 20.407 23.988 Atomic orbital electron populations 1.22778 0.81252 1.02453 1.00036 1.87892 1.19518 1.27283 1.94924 1.23683 0.93696 0.84338 0.97483 0.90473 1.22353 0.92959 0.93492 0.93964 1.44591 1.34616 1.36269 1.17765 1.18636 1.33093 0.97394 0.87936 0.88745 1.24996 0.99585 0.96951 0.95929 1.69834 1.49967 1.26837 1.08268 0.87023 0.78251 0.86123 0.77538 1.21260 1.22817 1.19987 1.21690 0.96011 0.94254 0.87591 1.22094 0.95636 1.00427 0.78578 0.87828 1.45971 1.22779 1.61277 1.06816 1.20502 0.82942 0.77958 0.88163 1.90633 1.29035 1.41906 1.79754 1.22185 1.01949 1.03816 0.92283 1.20649 0.98311 0.78883 0.95117 0.88500 1.22186 1.03390 1.02032 0.94925 1.48218 1.20077 1.05853 1.59214 1.22140 0.88517 0.92223 0.99064 1.22570 0.97754 0.96621 0.99909 1.22330 1.00753 0.95426 1.01148 1.20888 0.82775 0.88533 0.77398 1.90667 1.25636 1.81968 1.43569 0.89844 0.94210 0.93803 0.91815 0.94333 0.92595 0.94296 0.93985 0.76843 0.87828 0.87514 0.92183 0.91226 0.90882 0.88569 0.91805 0.89830 0.89523 0.88355 0.88250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.85 101.05 1.10 1.50 16 2 O -0.38 -6.30 10.52 -35.23 -0.37 -6.67 16 3 C 0.07 1.17 3.17 -24.47 -0.08 1.09 16 4 H 0.08 1.20 7.69 -51.93 -0.40 0.80 16 5 C 0.10 2.16 4.44 -2.41 -0.01 2.15 16 6 N -0.60 -14.61 3.21 -169.94 -0.54 -15.16 16 7 C -0.24 -6.89 10.57 -15.06 -0.16 -7.05 16 8 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 9 C 0.02 0.71 5.43 -17.43 -0.09 0.61 16 10 N -0.91 -27.72 13.97 55.49 0.78 -26.95 16 11 Si 0.88 22.71 24.27 -169.99 -4.13 18.59 16 12 H -0.29 -7.05 6.49 56.52 0.37 -6.68 16 13 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 14 H -0.27 -7.10 6.66 56.52 0.38 -6.72 16 15 C 0.13 2.65 7.00 -3.06 -0.02 2.63 16 16 C 0.14 2.37 3.00 -66.10 -0.20 2.17 16 17 H 0.10 1.97 7.62 -51.93 -0.40 1.58 16 18 N -0.72 -9.81 5.12 -52.03 -0.27 -10.08 16 19 C 0.52 7.04 7.69 -10.99 -0.08 6.96 16 20 O -0.54 -8.62 13.28 5.56 0.07 -8.55 16 21 C -0.16 -1.68 5.13 -27.88 -0.14 -1.82 16 22 C 0.17 1.73 2.43 -67.93 -0.17 1.56 16 23 H 0.10 0.95 7.89 -51.93 -0.41 0.54 16 24 C -0.17 -1.41 9.19 37.16 0.34 -1.07 16 25 N -0.60 -6.40 2.20 -164.83 -0.36 -6.76 16 26 C 0.10 0.93 6.85 -3.12 -0.02 0.91 16 27 C -0.13 -1.02 7.18 -25.10 -0.18 -1.20 16 28 C -0.16 -1.35 6.86 -26.74 -0.18 -1.53 16 29 C 0.52 6.15 7.39 -10.86 -0.08 6.07 16 30 O -0.54 -8.01 15.07 5.56 0.08 -7.93 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 1.47 6.64 -51.93 -0.34 1.12 16 35 H 0.04 0.92 5.57 -51.93 -0.29 0.63 16 36 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 37 H 0.04 0.76 8.03 -51.93 -0.42 0.35 16 38 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.40 4.44 8.54 -40.82 -0.35 4.09 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.11 1.23 6.67 -51.93 -0.35 0.88 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.75 6.75 -51.93 -0.35 0.40 16 45 H 0.10 1.04 6.71 -51.93 -0.35 0.69 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 391.23 15.07 5.90 5.90 Total: -1.00 -34.78 391.23 -7.16 -41.95 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -8.34 Total: 2.69 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: 0.02 Total: 12.97 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: -0.40 Total: -58.94 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.21 Total: -23.14 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.13 Total: 18.59 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.78 -7.16 -41.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213716850.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.583 kcal (2) G-P(sol) polarization free energy of solvation -34.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds