Wall clock time and date at job start Tue Mar 31 2020 23:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47045 * 2 1 4 4 C 1.52998 * 109.46744 * 240.00730 * 2 1 3 5 5 C 1.50701 * 109.47058 * 175.00123 * 4 2 1 6 6 O 1.21281 * 119.99902 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00178 * 180.02562 * 5 4 2 8 8 C 1.46502 * 120.00014 * 179.97438 * 7 5 4 9 9 H 1.08998 * 110.64102 * 36.68383 * 8 7 5 10 10 C 1.54316 * 110.71717 * 273.54115 * 8 7 5 11 11 N 1.47022 * 107.27320 * 263.65437 * 10 8 7 12 12 C 1.36938 * 125.65145 * 181.02283 * 11 10 8 13 13 H 1.08002 * 119.99798 * 13.61610 * 12 11 10 14 14 C 1.38805 * 120.00326 * 193.61334 * 12 11 10 15 15 N 1.31627 * 119.99755 * 27.28217 * 14 12 11 16 16 Si 1.86803 * 120.00275 * 207.28323 * 14 12 11 17 17 H 1.48501 * 109.46920 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47248 * 239.99936 * 16 14 12 19 19 H 1.48500 * 109.46962 * 119.99939 * 16 14 12 20 20 C 1.47423 * 108.69958 * 1.28573 * 11 10 8 21 21 C 1.55125 * 104.72395 * 335.55457 * 20 11 10 22 22 H 1.09001 * 111.19051 * 279.19096 * 21 20 11 23 23 O 1.42902 * 110.93665 * 155.28677 * 21 20 11 24 24 N 1.46498 * 109.47526 * 120.00428 * 2 1 3 25 25 C 1.45754 * 117.94766 * 239.73855 * 24 2 1 26 26 C 1.53100 * 110.38230 * 160.74214 * 25 24 2 27 27 C 1.53344 * 108.53004 * 51.11512 * 26 25 24 28 28 C 1.53063 * 108.42438 * 292.30464 * 27 26 25 29 29 C 1.33354 * 117.94543 * 59.99743 * 24 2 1 30 30 O 1.21288 * 118.24293 * 2.20254 * 29 24 2 31 31 H 1.09001 * 109.47410 * 59.99314 * 1 2 3 32 32 H 1.09003 * 109.47045 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46778 * 299.99763 * 1 2 3 34 34 H 1.08992 * 109.47593 * 54.99620 * 4 2 1 35 35 H 1.09003 * 109.46802 * 294.99388 * 4 2 1 36 36 H 0.96999 * 119.99601 * 359.97438 * 7 5 4 37 37 H 1.08999 * 109.88637 * 144.23443 * 10 8 7 38 38 H 1.09003 * 109.88406 * 23.07108 * 10 8 7 39 39 H 0.96993 * 119.99660 * 5.85229 * 15 14 12 40 40 H 1.09002 * 110.36499 * 94.49043 * 20 11 10 41 41 H 1.09005 * 110.36367 * 216.80049 * 20 11 10 42 42 H 0.96700 * 113.99787 * 67.96452 * 23 21 20 43 43 H 1.08999 * 109.29615 * 281.23514 * 25 24 2 44 44 H 1.08996 * 109.29717 * 40.61363 * 25 24 2 45 45 H 1.08997 * 109.81281 * 291.32338 * 26 25 24 46 46 H 1.09005 * 109.67695 * 170.82893 * 26 25 24 47 47 H 1.09004 * 109.67541 * 172.57321 * 27 26 25 48 48 H 1.09005 * 109.70537 * 52.05949 * 27 26 25 49 49 H 1.08999 * 109.40307 * 288.77186 * 28 27 26 50 50 H 1.09007 * 109.40369 * 169.03037 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5418 -0.6148 -1.3129 6 8 4.1449 -0.0204 -0.4446 7 7 4.2148 -1.1794 -2.3351 8 6 5.6748 -1.0756 -2.3971 9 1 6.1071 -1.1362 -1.3983 10 6 6.0998 0.2320 -3.0976 11 7 6.3637 -0.0935 -4.5069 12 6 6.7848 0.7898 -5.4648 13 1 7.1600 1.7606 -5.1765 14 6 6.7294 0.4375 -6.8062 15 7 5.8368 -0.4366 -7.2208 16 14 7.9216 1.2037 -8.0233 17 1 8.8183 2.1482 -7.3098 18 1 7.1607 1.9358 -9.0676 19 1 8.7338 0.1358 -8.6597 20 6 6.0939 -1.5272 -4.7193 21 6 6.2683 -2.1729 -3.3196 22 1 7.3206 -2.3459 -3.0939 23 8 5.5196 -3.3859 -3.2199 24 7 2.0184 -0.6907 1.1961 25 6 2.8579 0.0585 2.1226 26 6 2.8769 -0.6215 3.4941 27 6 3.2233 -2.1025 3.2990 28 6 2.0609 -2.7789 2.5680 29 6 1.6714 -1.9670 1.3662 30 8 1.0053 -2.5004 0.5044 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.6053 -0.2616 -2.1370 35 1 1.7516 -1.7714 -1.2057 36 1 3.7324 -1.6545 -3.0297 37 1 7.0038 0.6250 -2.6324 38 1 5.2969 0.9663 -3.0309 39 1 5.1637 -0.7704 -6.6073 40 1 5.0763 -1.6719 -5.0823 41 1 6.8120 -1.9482 -5.4231 42 1 5.8533 -4.1011 -3.7787 43 1 3.8727 0.1103 1.7280 44 1 2.4640 1.0692 2.2289 45 1 1.8971 -0.5339 3.9635 46 1 3.6290 -0.1504 4.1270 47 1 3.3714 -2.5758 4.2697 48 1 4.1325 -2.1921 2.7045 49 1 1.2080 -2.8606 3.2417 50 1 2.3650 -3.7757 2.2484 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219629022.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:24 Heat of formation + Delta-G solvation = -94.927750 kcal Electronic energy + Delta-G solvation = -31595.564766 eV Core-core repulsion = 27430.371699 eV Total energy + Delta-G solvation = -4165.193067 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.97935 -39.52899 -37.94174 -36.50474 -35.41098 -35.24426 -33.83114 -31.91773 -31.28192 -29.65117 -28.77954 -27.90865 -26.91485 -24.62030 -24.26811 -23.42283 -21.60035 -20.62596 -20.45224 -19.82081 -18.42567 -17.69367 -17.25064 -16.99320 -16.78930 -16.00041 -15.83756 -15.42814 -14.87921 -14.74655 -14.46003 -14.35867 -14.00955 -13.95654 -13.70100 -13.55396 -13.30840 -13.08941 -12.97221 -12.61086 -12.49953 -12.27956 -12.13227 -11.91764 -11.75319 -11.61110 -11.37712 -11.23383 -11.19240 -11.13916 -10.89915 -10.80635 -10.58520 -10.40076 -10.09433 -9.80991 -9.53214 -9.42337 -9.35859 -8.69027 -8.61083 -8.48002 -7.03975 -6.15853 -3.19491 2.61062 2.93425 3.00348 3.46815 3.48862 3.51586 3.64923 4.29884 4.40619 4.54066 4.55683 4.57161 4.59968 4.84765 4.93942 5.06404 5.15875 5.19477 5.22896 5.26322 5.29996 5.37890 5.42208 5.51039 5.54201 5.56522 5.60277 5.61002 5.66499 5.70868 5.74902 5.80081 5.95234 5.99438 6.01589 6.06424 6.17687 6.41061 6.55347 6.55918 6.70430 6.83056 6.97860 7.51498 7.68250 7.86151 7.88997 8.16497 8.41133 8.57116 8.94351 9.74521 10.25918 11.17411 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019493 B = 0.002792 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.036513 B =10025.711504 C =10203.040044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.162 3.838 3 H 0.092 0.908 4 C -0.166 4.166 5 C 0.518 3.482 6 O -0.553 6.553 7 N -0.701 5.701 8 C 0.148 3.852 9 H 0.090 0.910 10 C 0.128 3.872 11 N -0.600 5.600 12 C -0.335 4.335 13 H 0.069 0.931 14 C -0.026 4.026 15 N -0.921 5.921 16 Si 1.070 2.930 17 H -0.292 1.292 18 H -0.294 1.294 19 H -0.290 1.290 20 C 0.119 3.881 21 C 0.073 3.927 22 H 0.074 0.926 23 O -0.561 6.561 24 N -0.582 5.582 25 C 0.112 3.888 26 C -0.135 4.135 27 C -0.124 4.124 28 C -0.134 4.134 29 C 0.515 3.485 30 O -0.557 6.557 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.121 0.879 36 H 0.404 0.596 37 H 0.036 0.964 38 H 0.033 0.967 39 H 0.269 0.731 40 H 0.034 0.966 41 H 0.056 0.944 42 H 0.379 0.621 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.082 0.918 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.095 0.905 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.399 -3.640 20.319 21.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.058 3.942 3 H 0.110 0.890 4 C -0.206 4.206 5 C 0.305 3.695 6 O -0.432 6.432 7 N -0.351 5.351 8 C 0.042 3.958 9 H 0.108 0.892 10 C 0.002 3.998 11 N -0.329 5.329 12 C -0.463 4.463 13 H 0.087 0.913 14 C -0.227 4.227 15 N -0.562 5.562 16 Si 0.900 3.100 17 H -0.218 1.218 18 H -0.221 1.221 19 H -0.217 1.217 20 C -0.007 4.007 21 C 0.012 3.988 22 H 0.092 0.908 23 O -0.366 6.366 24 N -0.314 5.314 25 C -0.011 4.011 26 C -0.173 4.173 27 C -0.162 4.162 28 C -0.174 4.174 29 C 0.303 3.697 30 O -0.437 6.437 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.138 0.862 36 H 0.239 0.761 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.080 0.920 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.226 0.774 43 H 0.106 0.894 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.100 0.900 47 H 0.091 0.909 48 H 0.091 0.909 49 H 0.113 0.887 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.085 -3.063 19.302 20.788 hybrid contribution -0.303 -0.341 0.760 0.886 sum -7.388 -3.405 20.062 21.648 Atomic orbital electron populations 1.22211 0.94437 1.04302 1.01763 1.20770 0.93937 0.96151 0.83357 0.89024 1.22227 0.92523 1.06251 0.99596 1.20561 0.89878 0.78043 0.81061 1.90565 1.70519 1.43125 1.38957 1.45701 1.07126 1.55908 1.26393 1.21909 0.80450 0.94667 0.98778 0.89168 1.21753 0.97893 0.93914 0.86272 1.44430 1.79709 1.03806 1.04912 1.19831 1.40055 0.98887 0.87516 0.91310 1.25752 1.00921 1.00537 0.95535 1.70749 1.14281 1.33729 1.37483 0.83464 0.75757 0.75461 0.75349 1.21814 1.22139 1.21658 1.22212 0.99391 0.85875 0.93226 1.23488 0.94290 0.83760 0.97229 0.90787 1.86401 1.58186 1.22752 1.69246 1.47214 1.49845 1.11119 1.23195 1.21560 0.96793 0.94530 0.88175 1.21924 1.02567 0.96029 0.96777 1.21647 0.98269 0.95337 1.00913 1.21645 1.00084 0.99899 0.95742 1.20069 0.79659 0.81653 0.88270 1.90604 1.40370 1.69553 1.43167 0.91637 0.89956 0.92732 0.88418 0.86158 0.76106 0.94569 0.94928 0.91958 0.94863 0.92530 0.77425 0.89368 0.91256 0.91396 0.89978 0.90861 0.90932 0.88701 0.88497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 9.08 37.16 0.34 -1.48 16 2 C 0.16 1.97 2.20 -67.93 -0.15 1.82 16 3 H 0.09 1.11 7.60 -51.93 -0.39 0.72 16 4 C -0.17 -2.27 5.00 -27.88 -0.14 -2.41 16 5 C 0.52 8.48 7.69 -10.98 -0.08 8.40 16 6 O -0.55 -9.79 12.92 5.56 0.07 -9.72 16 7 N -0.70 -12.03 4.78 -52.03 -0.25 -12.28 16 8 C 0.15 2.71 3.13 -66.10 -0.21 2.50 16 9 H 0.09 1.63 7.69 -51.93 -0.40 1.23 16 10 C 0.13 2.78 6.98 -3.07 -0.02 2.76 16 11 N -0.60 -15.04 3.33 -169.94 -0.57 -15.60 16 12 C -0.34 -9.43 10.05 -15.06 -0.15 -9.58 16 13 H 0.07 1.95 7.96 -52.49 -0.42 1.53 16 14 C -0.03 -0.75 5.09 -17.43 -0.09 -0.83 16 15 N -0.92 -27.37 12.82 55.49 0.71 -26.66 16 16 Si 1.07 25.25 30.00 -169.99 -5.10 20.15 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 C 0.12 2.66 4.94 -2.41 -0.01 2.65 16 21 C 0.07 1.29 4.23 -24.47 -0.10 1.19 16 22 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 23 O -0.56 -8.73 12.65 -35.23 -0.45 -9.18 16 24 N -0.58 -6.88 2.24 -167.26 -0.37 -7.25 16 25 C 0.11 1.12 5.76 -4.39 -0.03 1.10 16 26 C -0.14 -1.00 6.03 -26.50 -0.16 -1.16 16 27 C -0.12 -0.97 6.03 -26.52 -0.16 -1.13 16 28 C -0.13 -1.24 6.03 -28.10 -0.17 -1.41 16 29 C 0.51 6.48 6.88 -11.87 -0.08 6.40 16 30 O -0.56 -8.55 12.45 5.55 0.07 -8.48 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.04 6.00 -51.93 -0.31 0.72 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.12 1.80 5.73 -51.93 -0.30 1.50 16 36 H 0.40 6.85 8.21 -40.82 -0.34 6.52 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.03 0.76 8.04 -51.93 -0.42 0.34 16 39 H 0.27 7.97 5.83 -40.82 -0.24 7.73 16 40 H 0.03 0.80 6.84 -51.93 -0.36 0.44 16 41 H 0.06 1.37 7.73 -51.93 -0.40 0.97 16 42 H 0.38 4.40 9.12 45.56 0.42 4.81 16 43 H 0.09 1.09 6.30 -51.93 -0.33 0.77 16 44 H 0.07 0.61 8.03 -51.93 -0.42 0.20 16 45 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 46 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.07 0.68 8.13 -51.93 -0.42 0.25 16 49 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 50 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 386.23 15.07 5.82 5.82 Total: -1.00 -33.89 386.23 -8.62 -42.51 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -7.34 Total: 11.88 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: -1.22 Total: 8.82 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -0.48 Total: -61.80 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.30 Total: -27.38 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.10 Total: 20.15 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.89 -8.62 -42.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219629022.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.422 kcal (2) G-P(sol) polarization free energy of solvation -33.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds