Wall clock time and date at job start Tue Mar 31 2020 23:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47045 * 2 1 4 4 C 1.52998 * 109.46744 * 240.00730 * 2 1 3 5 5 C 1.50701 * 109.47058 * 175.00123 * 4 2 1 6 6 O 1.21281 * 119.99902 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00178 * 180.02562 * 5 4 2 8 8 C 1.46502 * 120.00014 * 179.97438 * 7 5 4 9 9 H 1.08998 * 110.64102 * 36.68383 * 8 7 5 10 10 C 1.54316 * 110.71717 * 273.54115 * 8 7 5 11 11 N 1.47022 * 107.27320 * 263.65437 * 10 8 7 12 12 C 1.36938 * 125.65145 * 181.02283 * 11 10 8 13 13 H 1.08002 * 119.99798 * 13.61610 * 12 11 10 14 14 C 1.38805 * 120.00326 * 193.61334 * 12 11 10 15 15 N 1.31627 * 119.99755 * 27.28217 * 14 12 11 16 16 Si 1.86803 * 120.00275 * 207.28323 * 14 12 11 17 17 H 1.48501 * 109.46920 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47248 * 239.99936 * 16 14 12 19 19 H 1.48500 * 109.46962 * 119.99939 * 16 14 12 20 20 C 1.47423 * 108.69958 * 1.28573 * 11 10 8 21 21 C 1.55125 * 104.72395 * 335.55457 * 20 11 10 22 22 H 1.09001 * 111.19051 * 279.19096 * 21 20 11 23 23 O 1.42902 * 110.93665 * 155.28677 * 21 20 11 24 24 N 1.46498 * 109.47526 * 120.00428 * 2 1 3 25 25 C 1.45754 * 117.94766 * 239.73855 * 24 2 1 26 26 C 1.53100 * 110.38230 * 160.74214 * 25 24 2 27 27 C 1.53344 * 108.53004 * 51.11512 * 26 25 24 28 28 C 1.53063 * 108.42438 * 292.30464 * 27 26 25 29 29 C 1.33354 * 117.94543 * 59.99743 * 24 2 1 30 30 O 1.21288 * 118.24293 * 2.20254 * 29 24 2 31 31 H 1.09001 * 109.47410 * 59.99314 * 1 2 3 32 32 H 1.09003 * 109.47045 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46778 * 299.99763 * 1 2 3 34 34 H 1.08992 * 109.47593 * 54.99620 * 4 2 1 35 35 H 1.09003 * 109.46802 * 294.99388 * 4 2 1 36 36 H 0.96999 * 119.99601 * 359.97438 * 7 5 4 37 37 H 1.08999 * 109.88637 * 144.23443 * 10 8 7 38 38 H 1.09003 * 109.88406 * 23.07108 * 10 8 7 39 39 H 0.96993 * 119.99660 * 5.85229 * 15 14 12 40 40 H 1.09002 * 110.36499 * 94.49043 * 20 11 10 41 41 H 1.09005 * 110.36367 * 216.80049 * 20 11 10 42 42 H 0.96700 * 113.99787 * 67.96452 * 23 21 20 43 43 H 1.08999 * 109.29615 * 281.23514 * 25 24 2 44 44 H 1.08996 * 109.29717 * 40.61363 * 25 24 2 45 45 H 1.08997 * 109.81281 * 291.32338 * 26 25 24 46 46 H 1.09005 * 109.67695 * 170.82893 * 26 25 24 47 47 H 1.09004 * 109.67541 * 172.57321 * 27 26 25 48 48 H 1.09005 * 109.70537 * 52.05949 * 27 26 25 49 49 H 1.08999 * 109.40307 * 288.77186 * 28 27 26 50 50 H 1.09007 * 109.40369 * 169.03037 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5418 -0.6148 -1.3129 6 8 4.1449 -0.0204 -0.4446 7 7 4.2148 -1.1794 -2.3351 8 6 5.6748 -1.0756 -2.3971 9 1 6.1071 -1.1362 -1.3983 10 6 6.0998 0.2320 -3.0976 11 7 6.3637 -0.0935 -4.5069 12 6 6.7848 0.7898 -5.4648 13 1 7.1600 1.7606 -5.1765 14 6 6.7294 0.4375 -6.8062 15 7 5.8368 -0.4366 -7.2208 16 14 7.9216 1.2037 -8.0233 17 1 8.8183 2.1482 -7.3098 18 1 7.1607 1.9358 -9.0676 19 1 8.7338 0.1358 -8.6597 20 6 6.0939 -1.5272 -4.7193 21 6 6.2683 -2.1729 -3.3196 22 1 7.3206 -2.3459 -3.0939 23 8 5.5196 -3.3859 -3.2199 24 7 2.0184 -0.6907 1.1961 25 6 2.8579 0.0585 2.1226 26 6 2.8769 -0.6215 3.4941 27 6 3.2233 -2.1025 3.2990 28 6 2.0609 -2.7789 2.5680 29 6 1.6714 -1.9670 1.3662 30 8 1.0053 -2.5004 0.5044 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.6053 -0.2616 -2.1370 35 1 1.7516 -1.7714 -1.2057 36 1 3.7324 -1.6545 -3.0297 37 1 7.0038 0.6250 -2.6324 38 1 5.2969 0.9663 -3.0309 39 1 5.1637 -0.7704 -6.6073 40 1 5.0763 -1.6719 -5.0823 41 1 6.8120 -1.9482 -5.4231 42 1 5.8533 -4.1011 -3.7787 43 1 3.8727 0.1103 1.7280 44 1 2.4640 1.0692 2.2289 45 1 1.8971 -0.5339 3.9635 46 1 3.6290 -0.1504 4.1270 47 1 3.3714 -2.5758 4.2697 48 1 4.1325 -2.1921 2.7045 49 1 1.2080 -2.8606 3.2417 50 1 2.3650 -3.7757 2.2484 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219629022.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:24 Heat of formation + Delta-G solvation = -119.702681 kcal Electronic energy + Delta-G solvation = -31596.639088 eV Core-core repulsion = 27430.371699 eV Total energy + Delta-G solvation = -4166.267389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.97382 -40.92251 -39.41986 -37.38576 -36.88997 -36.27467 -35.41440 -33.66778 -32.29849 -30.48233 -30.31324 -29.46004 -28.37447 -26.21509 -25.35970 -24.32968 -22.72762 -22.32962 -21.67933 -21.31345 -19.70589 -19.27519 -18.58416 -18.16901 -17.93445 -17.24706 -16.81681 -16.60615 -16.48984 -16.10393 -15.63483 -15.42238 -15.33875 -15.21839 -15.13216 -14.70517 -14.62765 -14.27833 -14.15060 -14.10413 -13.96703 -13.46911 -13.13148 -13.00268 -12.91352 -12.85601 -12.71467 -12.64130 -12.54635 -12.30047 -11.96229 -11.89127 -11.83618 -11.79947 -11.74964 -11.71724 -11.05698 -10.80496 -10.59098 -10.36756 -10.08932 -9.60909 -9.11688 -8.38198 -5.38725 1.56978 1.62811 1.64383 1.68027 1.81387 2.07497 2.14967 2.58225 2.91645 3.16068 3.46832 3.57399 3.60864 3.73058 3.78349 3.84296 3.91958 3.94100 3.97022 4.08404 4.21209 4.31769 4.36854 4.43530 4.48632 4.54881 4.59306 4.67769 4.73169 4.76645 4.77286 4.81363 4.89731 4.91750 4.96831 4.99936 5.03731 5.10579 5.11239 5.28217 5.36840 5.49461 5.58047 5.63090 6.24706 6.50665 6.62146 6.71141 6.81608 7.20995 7.23724 7.62747 8.16970 8.94704 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019493 B = 0.002792 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.036513 B =10025.711504 C =10203.040044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.158 3.842 3 H 0.092 0.908 4 C -0.158 4.158 5 C 0.514 3.486 6 O -0.565 6.565 7 N -0.704 5.704 8 C 0.157 3.843 9 H 0.100 0.900 10 C 0.130 3.870 11 N -0.618 5.618 12 C -0.349 4.349 13 H 0.061 0.939 14 C -0.075 4.075 15 N -0.945 5.945 16 Si 1.121 2.879 17 H -0.274 1.274 18 H -0.291 1.291 19 H -0.284 1.284 20 C 0.127 3.873 21 C 0.098 3.902 22 H 0.093 0.907 23 O -0.559 6.559 24 N -0.582 5.582 25 C 0.109 3.891 26 C -0.128 4.128 27 C -0.119 4.119 28 C -0.131 4.131 29 C 0.503 3.497 30 O -0.591 6.591 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.405 0.595 37 H 0.040 0.960 38 H 0.012 0.988 39 H 0.257 0.743 40 H 0.014 0.986 41 H 0.032 0.968 42 H 0.399 0.601 43 H 0.062 0.938 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.100 0.900 47 H 0.099 0.901 48 H 0.053 0.947 49 H 0.115 0.885 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.167 -3.751 22.161 23.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.053 3.947 3 H 0.110 0.890 4 C -0.198 4.198 5 C 0.302 3.698 6 O -0.444 6.444 7 N -0.354 5.354 8 C 0.051 3.949 9 H 0.118 0.882 10 C 0.004 3.996 11 N -0.347 5.347 12 C -0.477 4.477 13 H 0.079 0.921 14 C -0.270 4.270 15 N -0.588 5.588 16 Si 0.945 3.055 17 H -0.199 1.199 18 H -0.218 1.218 19 H -0.211 1.211 20 C 0.001 3.999 21 C 0.037 3.963 22 H 0.111 0.889 23 O -0.366 6.366 24 N -0.313 5.313 25 C -0.013 4.013 26 C -0.165 4.165 27 C -0.157 4.157 28 C -0.171 4.171 29 C 0.294 3.706 30 O -0.474 6.474 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.240 0.760 37 H 0.058 0.942 38 H 0.031 0.969 39 H 0.068 0.932 40 H 0.032 0.968 41 H 0.051 0.949 42 H 0.249 0.751 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.072 0.928 49 H 0.133 0.867 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.850 -3.183 21.185 22.491 hybrid contribution -0.406 -0.288 0.211 0.540 sum -7.255 -3.471 21.396 22.858 Atomic orbital electron populations 1.22109 0.93150 1.03431 1.02975 1.20833 0.94916 0.95878 0.83044 0.88988 1.22210 0.90478 1.05989 1.01133 1.21050 0.90913 0.77367 0.80479 1.90565 1.71050 1.43534 1.39296 1.45743 1.06689 1.56185 1.26763 1.21726 0.81336 0.93094 0.98748 0.88177 1.21801 0.97337 0.95397 0.85076 1.44642 1.79626 1.04760 1.05674 1.20072 1.39732 0.99333 0.88559 0.92141 1.27133 1.01670 1.00716 0.97523 1.70861 1.15196 1.35333 1.37397 0.82785 0.74017 0.75185 0.73479 1.19927 1.21844 1.21055 1.22122 0.97364 0.84899 0.95553 1.23145 0.95401 0.84214 0.93557 0.88892 1.86380 1.58174 1.22441 1.69620 1.47332 1.49588 1.11180 1.23171 1.21650 0.95051 0.95451 0.89193 1.21918 1.03969 0.95421 0.95218 1.21632 0.96652 0.95793 1.01604 1.21685 1.01442 0.99156 0.94784 1.20734 0.79120 0.81866 0.88922 1.90587 1.41968 1.70234 1.44589 0.90524 0.91735 0.91435 0.87320 0.87158 0.76036 0.94210 0.96947 0.93215 0.96833 0.94925 0.75092 0.91949 0.90109 0.89985 0.88205 0.88249 0.92839 0.86661 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 9.08 71.98 0.65 -2.62 16 2 C 0.16 3.76 2.20 44.99 0.10 3.86 16 3 H 0.09 2.18 7.60 -2.39 -0.02 2.16 16 4 C -0.16 -4.33 5.00 29.85 0.15 -4.18 16 5 C 0.51 16.83 7.69 87.66 0.67 17.51 16 6 O -0.56 -19.96 12.92 -3.03 -0.04 -20.00 16 7 N -0.70 -24.12 4.78 -436.93 -2.09 -26.21 16 8 C 0.16 5.68 3.13 46.18 0.14 5.83 16 9 H 0.10 3.49 7.69 -2.39 -0.02 3.47 16 10 C 0.13 5.68 6.98 86.73 0.61 6.29 16 11 N -0.62 -31.52 3.33 -691.57 -2.30 -33.82 16 12 C -0.35 -19.91 10.05 84.03 0.84 -19.07 16 13 H 0.06 3.47 7.96 -2.91 -0.02 3.45 16 14 C -0.07 -4.25 5.09 84.86 0.43 -3.82 16 15 N -0.94 -57.21 12.82 21.65 0.28 -56.94 16 16 Si 1.12 51.00 30.00 68.60 2.06 53.06 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 18 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 C 0.13 5.73 4.94 86.93 0.43 6.16 16 21 C 0.10 3.36 4.23 32.06 0.14 3.50 16 22 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 23 O -0.56 -16.49 12.65 -148.98 -1.88 -18.38 16 24 N -0.58 -13.29 2.24 -802.28 -1.80 -15.09 16 25 C 0.11 2.05 5.76 86.55 0.50 2.55 16 26 C -0.13 -1.56 6.03 30.74 0.19 -1.37 16 27 C -0.12 -1.60 6.03 30.73 0.19 -1.41 16 28 C -0.13 -2.21 6.03 29.70 0.18 -2.03 16 29 C 0.50 12.33 6.88 87.71 0.60 12.94 16 30 O -0.59 -18.17 12.45 -3.05 -0.04 -18.20 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.60 6.00 -2.39 -0.01 1.59 16 33 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.11 3.35 5.73 -2.39 -0.01 3.34 16 36 H 0.40 13.80 8.21 -92.71 -0.76 13.03 16 37 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.01 0.59 8.04 -2.39 -0.02 0.57 16 39 H 0.26 15.74 5.83 -92.71 -0.54 15.20 16 40 H 0.01 0.68 6.84 -2.39 -0.02 0.67 16 41 H 0.03 1.61 7.73 -2.38 -0.02 1.59 16 42 H 0.40 8.46 9.12 -74.06 -0.68 7.79 16 43 H 0.06 1.52 6.30 -2.39 -0.02 1.51 16 44 H 0.08 1.31 8.03 -2.39 -0.02 1.29 16 45 H 0.08 0.82 8.12 -2.39 -0.02 0.80 16 46 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 47 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.05 0.93 8.13 -2.38 -0.02 0.91 16 49 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -74.37 386.23 -0.24 -74.62 By element: Atomic # 1 Polarization: 37.08 SS G_CDS: -0.25 Total: 36.83 kcal Atomic # 6 Polarization: 18.30 SS G_CDS: 5.82 Total: 24.12 kcal Atomic # 7 Polarization: -126.14 SS G_CDS: -5.91 Total: -132.05 kcal Atomic # 8 Polarization: -54.61 SS G_CDS: -1.96 Total: -56.58 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 2.06 Total: 53.06 kcal Total: -74.37 -0.24 -74.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219629022.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.087 kcal (2) G-P(sol) polarization free energy of solvation -74.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds