Wall clock time and date at job start Tue Mar 31 2020 22:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46649 * 2 1 4 4 C 1.50702 * 109.47231 * 240.00018 * 2 1 3 5 5 O 1.21277 * 119.99994 * 239.99745 * 4 2 1 6 6 N 1.34775 * 120.00025 * 59.99331 * 4 2 1 7 7 C 1.46505 * 120.00033 * 179.97438 * 6 4 2 8 8 H 1.08996 * 110.77784 * 36.79889 * 7 6 4 9 9 C 1.54937 * 110.72309 * 273.54952 * 7 6 4 10 10 N 1.48531 * 103.37331 * 204.30804 * 9 7 6 11 11 C 1.46908 * 110.99857 * 159.63431 * 10 9 7 12 12 C 1.50696 * 109.47292 * 189.99954 * 11 10 9 13 13 O 1.21292 * 119.99879 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99872 * 180.02562 * 12 11 10 15 15 C 1.37097 * 119.99717 * 180.02562 * 14 12 11 16 16 H 1.08008 * 119.99997 * 359.97438 * 15 14 12 17 17 C 1.38952 * 119.99770 * 180.02562 * 15 14 12 18 18 N 1.31405 * 120.00128 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99839 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47221 * 89.99614 * 19 17 15 21 21 H 1.48501 * 109.46891 * 209.99884 * 19 17 15 22 22 H 1.48499 * 109.46898 * 329.99888 * 19 17 15 23 23 C 1.47901 * 105.82310 * 39.12709 * 10 9 7 24 24 C 1.53998 * 107.05580 * 334.66757 * 23 10 9 25 25 H 1.09000 * 110.30693 * 242.21235 * 24 23 10 26 26 O 1.42902 * 110.31071 * 120.14080 * 24 23 10 27 27 C 1.52995 * 109.47387 * 119.99772 * 2 1 3 28 28 C 1.53784 * 113.61369 * 277.50226 * 27 2 1 29 29 C 1.53781 * 87.08057 * 220.02050 * 28 27 2 30 30 C 1.53779 * 87.08351 * 25.43144 * 29 28 27 31 31 H 1.09004 * 109.46649 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47318 * 299.99419 * 1 2 3 33 33 H 1.08998 * 109.47285 * 60.00425 * 1 2 3 34 34 H 0.97003 * 120.00213 * 0.02562 * 6 4 2 35 35 H 1.09002 * 110.66811 * 85.79212 * 9 7 6 36 36 H 1.09001 * 110.66542 * 322.82851 * 9 7 6 37 37 H 1.08996 * 109.47381 * 310.00547 * 11 10 9 38 38 H 1.09003 * 109.46570 * 70.00038 * 11 10 9 39 39 H 0.96997 * 120.00025 * 359.97438 * 14 12 11 40 40 H 0.96995 * 120.00235 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.92027 * 94.01264 * 23 10 9 42 42 H 1.08993 * 109.91982 * 215.11956 * 23 10 9 43 43 H 0.96701 * 114.00005 * 61.45616 * 26 24 23 44 44 H 1.08996 * 112.85042 * 48.80351 * 27 2 1 45 45 H 1.08999 * 113.61527 * 334.56335 * 28 27 2 46 46 H 1.08995 * 113.61547 * 105.46930 * 28 27 2 47 47 H 1.09004 * 113.61088 * 270.88496 * 29 28 27 48 48 H 1.08996 * 113.69571 * 139.99134 * 29 28 27 49 49 H 1.09006 * 113.61735 * 220.02442 * 30 29 28 50 50 H 1.09001 * 113.69234 * 89.12582 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7297 -1.6964 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1955 -0.9403 -3.6508 8 1 2.2112 -2.0190 -3.4954 9 6 3.6013 -0.4228 -4.0464 10 7 3.6808 -0.7209 -5.4993 11 6 4.7063 0.1049 -6.1509 12 6 4.5934 -0.0412 -7.6465 13 8 3.7422 -0.7621 -8.1228 14 7 5.4384 0.6290 -8.4547 15 6 5.3354 0.4965 -9.8154 16 1 4.5774 -0.1454 -10.2396 17 6 6.2069 1.1871 -10.6487 18 7 7.1294 1.9676 -10.1325 19 14 6.0670 1.0058 -12.5026 20 1 5.1384 2.0367 -13.0321 21 1 7.4062 1.1821 -13.1196 22 1 5.5451 -0.3454 -12.8299 23 6 2.3381 -0.4270 -6.0454 24 6 1.3358 -0.5791 -4.8861 25 1 0.6252 -1.3767 -5.1026 26 8 0.6455 0.6520 -4.6625 27 6 2.0401 -0.7212 1.2492 28 6 2.0720 0.1677 2.5037 29 6 3.4108 -0.5050 2.8502 30 6 3.5739 -0.7766 1.3454 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.1493 0.5388 -2.5436 35 1 4.3768 -0.9601 -3.5005 36 1 3.6804 0.6497 -3.8688 37 1 4.5604 1.1495 -5.8758 38 1 5.6948 -0.2212 -5.8275 39 1 6.1189 1.2058 -8.0738 40 1 7.7376 2.4500 -10.7142 41 1 2.3086 0.5924 -6.4302 42 1 2.0987 -1.1315 -6.8418 43 1 0.1235 0.9532 -5.4188 44 1 1.5575 -1.6855 1.4079 45 1 2.1620 1.2313 2.2831 46 1 1.2759 -0.0522 3.2150 47 1 3.3028 -1.4100 3.4481 48 1 4.1549 0.1821 3.2531 49 1 3.9902 -1.7588 1.1216 50 1 4.0745 0.0281 0.8069 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219862444.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:25 Heat of formation + Delta-G solvation = -96.316241 kcal Electronic energy + Delta-G solvation = -30049.248177 eV Core-core repulsion = 25883.994900 eV Total energy + Delta-G solvation = -4165.253277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.61080 -39.56563 -38.34389 -37.69031 -35.65780 -34.40054 -33.88074 -33.12210 -31.33639 -30.09494 -27.98204 -26.53226 -26.23556 -25.59007 -24.35061 -23.28268 -21.39081 -20.83699 -20.16993 -19.65621 -19.21980 -17.91333 -17.66171 -17.23700 -16.20017 -16.03409 -15.70984 -15.28692 -15.22794 -15.04942 -14.68560 -14.42019 -14.31762 -14.02244 -13.82532 -13.31717 -13.06676 -13.02954 -12.85457 -12.66491 -12.60461 -12.48652 -12.06065 -12.02070 -11.88040 -11.56796 -11.54615 -11.39156 -11.35285 -11.11779 -10.84476 -10.77086 -10.58988 -10.41816 -10.32856 -10.26003 -10.12730 -9.67347 -9.53269 -9.09396 -8.46597 -8.05220 -7.97248 -6.45597 -3.86730 2.58524 2.95794 3.14596 3.23859 3.29660 3.84795 3.94184 4.09913 4.25455 4.31758 4.39046 4.42338 4.60343 4.63568 4.67215 4.76144 4.90664 5.03517 5.05086 5.09917 5.15440 5.21550 5.34788 5.43017 5.44210 5.48504 5.51051 5.53764 5.65608 5.67280 5.70079 5.79780 5.80272 5.93736 5.95005 6.00318 6.07511 6.12227 6.22062 6.29054 6.36104 6.43603 7.09821 7.15973 7.44818 7.51247 7.52722 8.01206 8.20761 8.56489 9.13264 9.49171 10.00097 10.71979 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023793 B = 0.002041 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.549902 B =13714.360489 C =14372.552816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 H 0.095 0.905 4 C 0.515 3.485 5 O -0.535 6.535 6 N -0.712 5.712 7 C 0.154 3.846 8 H 0.108 0.892 9 C 0.024 3.976 10 N -0.489 5.489 11 C 0.037 3.963 12 C 0.441 3.559 13 O -0.583 6.583 14 N -0.561 5.561 15 C -0.300 4.300 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.900 5.900 19 Si 0.931 3.069 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.269 1.269 23 C 0.021 3.979 24 C 0.082 3.918 25 H 0.073 0.927 26 O -0.571 6.571 27 C -0.088 4.088 28 C -0.136 4.136 29 C -0.147 4.147 30 C -0.123 4.123 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.409 0.591 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.393 0.607 40 H 0.272 0.728 41 H 0.053 0.947 42 H 0.110 0.890 43 H 0.386 0.614 44 H 0.092 0.908 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.065 0.935 49 H 0.073 0.927 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.294 0.347 22.564 25.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 H 0.113 0.887 4 C 0.301 3.699 5 O -0.411 6.411 6 N -0.366 5.366 7 C 0.048 3.952 8 H 0.126 0.874 9 C -0.105 4.105 10 N -0.214 5.214 11 C -0.095 4.095 12 C 0.227 3.773 13 O -0.468 6.468 14 N -0.197 5.197 15 C -0.429 4.429 16 H 0.121 0.879 17 C -0.180 4.180 18 N -0.541 5.541 19 Si 0.758 3.242 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.108 4.108 24 C 0.022 3.978 25 H 0.091 0.909 26 O -0.378 6.378 27 C -0.107 4.107 28 C -0.173 4.173 29 C -0.184 4.184 30 C -0.161 4.161 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.246 0.754 35 H 0.106 0.894 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.110 0.890 39 H 0.226 0.774 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.128 0.872 43 H 0.235 0.765 44 H 0.111 0.889 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.096 0.904 48 H 0.084 0.916 49 H 0.092 0.908 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.776 -1.324 22.683 25.591 hybrid contribution -0.136 1.744 -1.341 2.204 sum -11.912 0.420 21.342 24.445 Atomic orbital electron populations 1.21751 0.92941 1.02719 1.02618 1.21364 0.97459 1.00486 0.92950 0.88657 1.20687 0.80042 0.84671 0.84505 1.90700 1.37503 1.26196 1.86698 1.45809 1.53608 1.32506 1.04649 1.21898 0.92326 0.98223 0.82783 0.87363 1.23670 0.97432 0.99378 0.90008 1.64598 1.04043 1.51591 1.01160 1.22116 0.97079 0.95537 0.94722 1.19695 0.85302 0.85039 0.87287 1.90477 1.37769 1.42189 1.76377 1.41854 1.30263 1.40987 1.06579 1.19696 1.16302 1.26240 0.80707 0.87874 1.25282 0.95638 0.96210 1.00820 1.69608 1.19002 1.29064 1.36452 0.85846 0.77467 0.78917 0.81991 1.20428 1.20879 1.19380 1.23674 0.88068 1.02325 0.96696 1.23154 0.93622 0.86352 0.94661 0.90916 1.86219 1.67129 1.40394 1.44030 1.22347 0.97152 0.98885 0.92333 1.22982 0.97889 0.99168 0.97298 1.22857 0.97536 1.00690 0.97363 1.22801 0.95592 1.02644 0.95055 0.92120 0.91461 0.92015 0.75433 0.89440 0.93436 0.93252 0.88960 0.77422 0.91803 0.92872 0.87216 0.76473 0.88935 0.90167 0.91598 0.90364 0.91646 0.90808 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.08 37.16 0.34 -0.59 16 2 C -0.10 -0.83 2.48 -91.77 -0.23 -1.06 16 3 H 0.10 0.68 7.94 -51.93 -0.41 0.27 16 4 C 0.51 5.88 6.96 -10.99 -0.08 5.80 16 5 O -0.53 -7.93 14.58 5.56 0.08 -7.85 16 6 N -0.71 -7.73 5.04 -51.91 -0.26 -7.99 16 7 C 0.15 1.96 3.30 -65.97 -0.22 1.75 16 8 H 0.11 1.51 7.70 -51.93 -0.40 1.11 16 9 C 0.02 0.35 6.23 -1.90 -0.01 0.34 16 10 N -0.49 -8.32 5.27 -231.89 -1.22 -9.54 16 11 C 0.04 0.68 5.48 -4.97 -0.03 0.65 16 12 C 0.44 10.29 7.36 -10.99 -0.08 10.20 16 13 O -0.58 -15.15 13.37 5.55 0.07 -15.08 16 14 N -0.56 -14.11 5.29 -10.96 -0.06 -14.16 16 15 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 16 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 17 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -24.36 13.05 55.50 0.72 -23.63 16 19 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 C 0.02 0.33 4.88 -2.75 -0.01 0.31 16 24 C 0.08 0.99 4.31 -25.27 -0.11 0.88 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 O -0.57 -5.80 11.61 -35.23 -0.41 -6.20 16 27 C -0.09 -0.75 2.72 -89.81 -0.24 -0.99 16 28 C -0.14 -0.91 7.63 -25.92 -0.20 -1.11 16 29 C -0.15 -1.09 8.08 -25.92 -0.21 -1.30 16 30 C -0.12 -1.17 6.19 -25.92 -0.16 -1.33 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.37 7.56 -51.93 -0.39 -0.02 16 34 H 0.41 3.92 6.59 -40.82 -0.27 3.65 16 35 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.05 0.67 7.85 -51.93 -0.41 0.26 16 37 H 0.05 0.83 7.89 -51.93 -0.41 0.42 16 38 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 39 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.05 0.90 7.41 -51.93 -0.38 0.51 16 42 H 0.11 2.02 6.73 -51.93 -0.35 1.67 16 43 H 0.39 2.72 9.11 45.56 0.41 3.14 16 44 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.08 0.49 7.96 -51.93 -0.41 0.07 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.07 0.82 7.97 -51.93 -0.41 0.41 16 50 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 LS Contribution 398.42 15.07 6.00 6.00 Total: -1.00 -32.00 398.42 -9.07 -41.07 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -7.50 Total: 15.91 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -1.48 Total: 5.65 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.82 Total: -55.33 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.25 Total: -29.13 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.00 -9.07 -41.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219862444.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.250 kcal (2) G-P(sol) polarization free energy of solvation -32.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds