Wall clock time and date at job start Tue Mar 31 2020 22:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46649 * 2 1 4 4 C 1.50702 * 109.47231 * 240.00018 * 2 1 3 5 5 O 1.21277 * 119.99994 * 239.99745 * 4 2 1 6 6 N 1.34775 * 120.00025 * 59.99331 * 4 2 1 7 7 C 1.46505 * 120.00033 * 179.97438 * 6 4 2 8 8 H 1.08996 * 110.77784 * 36.79889 * 7 6 4 9 9 C 1.54937 * 110.72309 * 273.54952 * 7 6 4 10 10 N 1.48531 * 103.37331 * 204.30804 * 9 7 6 11 11 C 1.46908 * 110.99857 * 159.63431 * 10 9 7 12 12 C 1.50696 * 109.47292 * 189.99954 * 11 10 9 13 13 O 1.21292 * 119.99879 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99872 * 180.02562 * 12 11 10 15 15 C 1.37097 * 119.99717 * 180.02562 * 14 12 11 16 16 H 1.08008 * 119.99997 * 359.97438 * 15 14 12 17 17 C 1.38952 * 119.99770 * 180.02562 * 15 14 12 18 18 N 1.31405 * 120.00128 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99839 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47221 * 89.99614 * 19 17 15 21 21 H 1.48501 * 109.46891 * 209.99884 * 19 17 15 22 22 H 1.48499 * 109.46898 * 329.99888 * 19 17 15 23 23 C 1.47901 * 105.82310 * 39.12709 * 10 9 7 24 24 C 1.53998 * 107.05580 * 334.66757 * 23 10 9 25 25 H 1.09000 * 110.30693 * 242.21235 * 24 23 10 26 26 O 1.42902 * 110.31071 * 120.14080 * 24 23 10 27 27 C 1.52995 * 109.47387 * 119.99772 * 2 1 3 28 28 C 1.53784 * 113.61369 * 277.50226 * 27 2 1 29 29 C 1.53781 * 87.08057 * 220.02050 * 28 27 2 30 30 C 1.53779 * 87.08351 * 25.43144 * 29 28 27 31 31 H 1.09004 * 109.46649 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47318 * 299.99419 * 1 2 3 33 33 H 1.08998 * 109.47285 * 60.00425 * 1 2 3 34 34 H 0.97003 * 120.00213 * 0.02562 * 6 4 2 35 35 H 1.09002 * 110.66811 * 85.79212 * 9 7 6 36 36 H 1.09001 * 110.66542 * 322.82851 * 9 7 6 37 37 H 1.08996 * 109.47381 * 310.00547 * 11 10 9 38 38 H 1.09003 * 109.46570 * 70.00038 * 11 10 9 39 39 H 0.96997 * 120.00025 * 359.97438 * 14 12 11 40 40 H 0.96995 * 120.00235 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.92027 * 94.01264 * 23 10 9 42 42 H 1.08993 * 109.91982 * 215.11956 * 23 10 9 43 43 H 0.96701 * 114.00005 * 61.45616 * 26 24 23 44 44 H 1.08996 * 112.85042 * 48.80351 * 27 2 1 45 45 H 1.08999 * 113.61527 * 334.56335 * 28 27 2 46 46 H 1.08995 * 113.61547 * 105.46930 * 28 27 2 47 47 H 1.09004 * 113.61088 * 270.88496 * 29 28 27 48 48 H 1.08996 * 113.69571 * 139.99134 * 29 28 27 49 49 H 1.09006 * 113.61735 * 220.02442 * 30 29 28 50 50 H 1.09001 * 113.69234 * 89.12582 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7297 -1.6964 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1955 -0.9403 -3.6508 8 1 2.2112 -2.0190 -3.4954 9 6 3.6013 -0.4228 -4.0464 10 7 3.6808 -0.7209 -5.4993 11 6 4.7063 0.1049 -6.1509 12 6 4.5934 -0.0412 -7.6465 13 8 3.7422 -0.7621 -8.1228 14 7 5.4384 0.6290 -8.4547 15 6 5.3354 0.4965 -9.8154 16 1 4.5774 -0.1454 -10.2396 17 6 6.2069 1.1871 -10.6487 18 7 7.1294 1.9676 -10.1325 19 14 6.0670 1.0058 -12.5026 20 1 5.1384 2.0367 -13.0321 21 1 7.4062 1.1821 -13.1196 22 1 5.5451 -0.3454 -12.8299 23 6 2.3381 -0.4270 -6.0454 24 6 1.3358 -0.5791 -4.8861 25 1 0.6252 -1.3767 -5.1026 26 8 0.6455 0.6520 -4.6625 27 6 2.0401 -0.7212 1.2492 28 6 2.0720 0.1677 2.5037 29 6 3.4108 -0.5050 2.8502 30 6 3.5739 -0.7766 1.3454 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.1493 0.5388 -2.5436 35 1 4.3768 -0.9601 -3.5005 36 1 3.6804 0.6497 -3.8688 37 1 4.5604 1.1495 -5.8758 38 1 5.6948 -0.2212 -5.8275 39 1 6.1189 1.2058 -8.0738 40 1 7.7376 2.4500 -10.7142 41 1 2.3086 0.5924 -6.4302 42 1 2.0987 -1.1315 -6.8418 43 1 0.1235 0.9532 -5.4188 44 1 1.5575 -1.6855 1.4079 45 1 2.1620 1.2313 2.2831 46 1 1.2759 -0.0522 3.2150 47 1 3.3028 -1.4100 3.4481 48 1 4.1549 0.1821 3.2531 49 1 3.9902 -1.7588 1.1216 50 1 4.0745 0.0281 0.8069 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219862444.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:25 Heat of formation + Delta-G solvation = -122.108307 kcal Electronic energy + Delta-G solvation = -30050.366605 eV Core-core repulsion = 25883.994900 eV Total energy + Delta-G solvation = -4166.371705 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.55974 -40.75586 -39.68626 -38.78221 -36.80626 -35.93750 -35.28874 -33.86963 -33.33158 -31.34458 -29.15827 -28.05632 -26.87556 -26.20980 -26.05683 -24.14203 -22.67793 -21.85576 -21.07082 -21.01511 -20.29089 -19.88640 -18.62183 -18.13120 -17.74339 -17.20174 -16.70006 -16.55377 -16.31008 -16.12816 -16.07454 -15.84859 -15.53784 -15.18425 -15.10589 -14.72761 -14.23922 -14.14911 -13.75478 -13.59914 -13.49777 -13.41796 -13.26411 -13.20490 -13.03679 -12.96843 -12.66842 -12.56929 -12.50099 -12.43216 -12.15740 -12.13198 -12.00367 -11.51344 -11.39991 -11.28567 -11.11628 -10.94507 -10.54499 -10.31840 -10.04717 -10.04061 -9.42993 -8.48746 -5.97736 1.36435 1.40894 1.53655 1.69381 1.99249 2.03058 2.27778 2.83707 3.09929 3.17956 3.22650 3.49301 3.61160 3.74422 3.76142 3.78509 4.01592 4.03862 4.09765 4.19639 4.22796 4.33652 4.36372 4.39890 4.45335 4.46724 4.50484 4.62653 4.81227 4.88811 4.90365 4.92461 4.95825 4.98717 5.06898 5.08352 5.13763 5.23360 5.33143 5.38929 5.42747 5.44406 5.65963 5.73997 5.84252 6.01067 6.56423 6.62955 6.74062 7.09431 7.33707 7.51469 8.05977 8.68649 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023793 B = 0.002041 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.549902 B =13714.360489 C =14372.552816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 H 0.113 0.887 4 C 0.511 3.489 5 O -0.574 6.574 6 N -0.702 5.702 7 C 0.157 3.843 8 H 0.095 0.905 9 C 0.031 3.969 10 N -0.507 5.507 11 C 0.049 3.951 12 C 0.440 3.560 13 O -0.613 6.613 14 N -0.571 5.571 15 C -0.332 4.332 16 H 0.082 0.918 17 C -0.014 4.014 18 N -0.920 5.920 19 Si 0.994 3.006 20 H -0.269 1.269 21 H -0.272 1.272 22 H -0.273 1.273 23 C 0.025 3.975 24 C 0.102 3.898 25 H 0.088 0.912 26 O -0.566 6.566 27 C -0.091 4.091 28 C -0.122 4.122 29 C -0.144 4.144 30 C -0.133 4.133 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.418 0.582 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.395 0.605 40 H 0.278 0.722 41 H 0.041 0.959 42 H 0.080 0.920 43 H 0.402 0.598 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.072 0.928 49 H 0.046 0.954 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.527 1.851 23.822 27.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 H 0.131 0.869 4 C 0.299 3.701 5 O -0.452 6.452 6 N -0.355 5.355 7 C 0.050 3.950 8 H 0.113 0.887 9 C -0.098 4.098 10 N -0.233 5.233 11 C -0.083 4.083 12 C 0.228 3.772 13 O -0.499 6.499 14 N -0.208 5.208 15 C -0.461 4.461 16 H 0.100 0.900 17 C -0.214 4.214 18 N -0.561 5.561 19 Si 0.818 3.182 20 H -0.195 1.195 21 H -0.197 1.197 22 H -0.197 1.197 23 C -0.104 4.104 24 C 0.041 3.959 25 H 0.106 0.894 26 O -0.375 6.375 27 C -0.110 4.110 28 C -0.159 4.159 29 C -0.181 4.181 30 C -0.171 4.171 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.257 0.743 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.124 0.876 39 H 0.229 0.771 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.098 0.902 43 H 0.254 0.746 44 H 0.100 0.900 45 H 0.111 0.889 46 H 0.098 0.902 47 H 0.098 0.902 48 H 0.091 0.909 49 H 0.065 0.935 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.032 0.217 23.957 27.273 hybrid contribution 0.248 1.241 -1.704 2.123 sum -12.784 1.458 22.253 25.705 Atomic orbital electron populations 1.21748 0.91262 1.02585 1.03999 1.21398 0.98690 1.00643 0.90821 0.86926 1.21354 0.79197 0.84205 0.85357 1.90693 1.39280 1.28059 1.87215 1.45721 1.53347 1.32514 1.03944 1.21689 0.91699 0.97676 0.83890 0.88684 1.23619 0.98361 0.99722 0.88053 1.64527 1.04292 1.51819 1.02630 1.21984 0.98376 0.97011 0.90899 1.20564 0.83891 0.83475 0.89293 1.90466 1.38699 1.43084 1.77642 1.41918 1.30966 1.41727 1.06197 1.19670 1.16939 1.27309 0.82197 0.90045 1.26077 0.94908 0.95445 1.04974 1.69673 1.19240 1.29208 1.37996 0.84905 0.77943 0.78701 0.76653 1.19478 1.19681 1.19744 1.23548 0.88729 1.00569 0.97541 1.22838 0.92924 0.87669 0.92431 0.89403 1.86185 1.67019 1.39408 1.44910 1.22355 0.96000 0.99107 0.93551 1.22933 0.97540 0.99321 0.96132 1.22861 0.98432 1.01119 0.95736 1.22811 0.96493 1.00926 0.96867 0.93025 0.89503 0.91222 0.74320 0.90110 0.92689 0.91343 0.87580 0.77085 0.91272 0.94076 0.90202 0.74582 0.90008 0.88923 0.90227 0.90172 0.90943 0.93525 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.08 71.98 0.65 -0.77 16 2 C -0.09 -1.35 2.48 -11.54 -0.03 -1.38 16 3 H 0.11 1.27 7.94 -2.38 -0.02 1.25 16 4 C 0.51 11.16 6.96 87.66 0.61 11.77 16 5 O -0.57 -17.19 14.58 -3.02 -0.04 -17.24 16 6 N -0.70 -14.09 5.04 -436.54 -2.20 -16.29 16 7 C 0.16 3.88 3.30 46.26 0.15 4.03 16 8 H 0.10 2.65 7.70 -2.39 -0.02 2.63 16 9 C 0.03 0.88 6.23 86.65 0.54 1.42 16 10 N -0.51 -17.22 5.27 -887.56 -4.67 -21.89 16 11 C 0.05 1.77 5.48 85.55 0.47 2.24 16 12 C 0.44 20.93 7.36 87.66 0.64 21.58 16 13 O -0.61 -32.81 13.37 -3.07 -0.04 -32.85 16 14 N -0.57 -29.32 5.29 -306.98 -1.62 -30.94 16 15 C -0.33 -18.68 9.68 84.04 0.81 -17.87 16 16 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 17 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 18 N -0.92 -49.64 13.05 21.66 0.28 -49.36 16 19 Si 0.99 42.64 29.55 68.60 2.03 44.67 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 C 0.02 0.78 4.88 86.45 0.42 1.21 16 24 C 0.10 2.32 4.31 31.54 0.14 2.46 16 25 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 26 O -0.57 -10.11 11.61 -148.98 -1.73 -11.84 16 27 C -0.09 -1.43 2.72 -10.27 -0.03 -1.45 16 28 C -0.12 -1.32 7.63 31.12 0.24 -1.08 16 29 C -0.14 -1.95 8.08 31.12 0.25 -1.70 16 30 C -0.13 -2.51 6.19 31.12 0.19 -2.32 16 31 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.62 7.56 -2.39 -0.02 0.60 16 34 H 0.42 6.92 6.59 -92.71 -0.61 6.31 16 35 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.05 1.46 7.85 -2.39 -0.02 1.44 16 37 H 0.07 2.23 7.89 -2.39 -0.02 2.22 16 38 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 39 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 40 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 41 H 0.04 1.39 7.41 -2.38 -0.02 1.37 16 42 H 0.08 3.03 6.73 -2.39 -0.02 3.01 16 43 H 0.40 4.67 9.11 -74.06 -0.67 3.99 16 44 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.09 0.80 7.96 -2.39 -0.02 0.78 16 46 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 48 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.05 1.10 7.97 -2.38 -0.02 1.08 16 50 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 Total: -1.00 -70.59 398.42 -3.51 -74.10 By element: Atomic # 1 Polarization: 44.85 SS G_CDS: -1.05 Total: 43.80 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: 5.53 Total: 17.83 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -8.21 Total: -118.48 kcal Atomic # 8 Polarization: -60.12 SS G_CDS: -1.81 Total: -61.93 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -70.59 -3.51 -74.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219862444.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.004 kcal (2) G-P(sol) polarization free energy of solvation -70.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds