Wall clock time and date at job start Tue Mar 31 2020 22:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 C 1.50706 * 120.00302 * 180.02562 * 2 1 3 5 5 C 1.52991 * 109.47410 * 94.99595 * 4 2 1 6 6 H 1.09002 * 109.47210 * 55.00168 * 5 4 2 7 7 C 1.52997 * 109.47372 * 295.00314 * 5 4 2 8 8 C 1.50699 * 109.47188 * 174.99943 * 5 4 2 9 9 O 1.21283 * 119.99939 * 0.02562 * 8 5 4 10 10 N 1.34778 * 120.00237 * 179.97438 * 8 5 4 11 11 C 1.46499 * 120.00231 * 180.02562 * 10 8 5 12 12 H 1.09001 * 110.28986 * 32.87254 * 11 10 8 13 13 C 1.54384 * 110.32411 * 270.64130 * 11 10 8 14 14 N 1.48554 * 104.59466 * 217.25135 * 13 11 10 15 15 C 1.46902 * 110.99983 * 159.04143 * 14 13 11 16 16 C 1.50705 * 109.47114 * 174.70742 * 15 14 13 17 17 O 1.21287 * 119.99745 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99884 * 179.97438 * 16 15 14 19 19 C 1.37099 * 119.99954 * 179.97438 * 18 16 15 20 20 H 1.08001 * 119.99345 * 359.97438 * 19 18 16 21 21 C 1.38942 * 119.99985 * 179.97438 * 19 18 16 22 22 N 1.31418 * 120.00024 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99844 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47240 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47000 * 120.00216 * 23 21 19 26 26 H 1.48496 * 109.47013 * 239.99968 * 23 21 19 27 27 C 1.48558 * 104.22159 * 39.47970 * 14 13 11 28 28 C 1.54257 * 110.32465 * 155.00273 * 11 10 8 29 29 H 1.08997 * 110.32364 * 237.79081 * 28 11 10 30 30 O 1.42896 * 110.32371 * 359.89810 * 28 11 10 31 31 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 32 32 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 33 33 H 1.09007 * 109.46862 * 0.02562 * 3 2 1 34 34 H 1.08999 * 109.46792 * 119.99809 * 3 2 1 35 35 H 1.08995 * 109.47689 * 240.00339 * 3 2 1 36 36 H 1.08996 * 109.46892 * 215.00324 * 4 2 1 37 37 H 1.09001 * 109.46811 * 334.99425 * 4 2 1 38 38 H 1.08998 * 109.47205 * 299.99769 * 7 5 4 39 39 H 1.08996 * 109.47437 * 59.99730 * 7 5 4 40 40 H 1.09001 * 109.47295 * 180.02562 * 7 5 4 41 41 H 0.97002 * 119.99672 * 0.02562 * 10 8 5 42 42 H 1.09005 * 110.41010 * 336.02697 * 13 11 10 43 43 H 1.08996 * 110.41145 * 98.46662 * 13 11 10 44 44 H 1.09000 * 109.46787 * 294.70048 * 15 14 13 45 45 H 1.08991 * 109.47432 * 54.70395 * 15 14 13 46 46 H 0.96995 * 120.00188 * 359.97438 * 18 16 15 47 47 H 0.96997 * 119.99841 * 179.97438 * 22 21 19 48 48 H 1.09002 * 110.40943 * 201.73551 * 27 14 13 49 49 H 1.09003 * 110.50943 * 79.35528 * 27 14 13 50 50 H 0.96704 * 113.99612 * 179.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6834 -1.4377 6 1 2.9770 -0.8640 -1.9010 7 6 1.1488 -1.9539 -2.2331 8 6 3.2854 -2.9222 -1.4292 9 8 3.5767 -3.4509 -0.3772 10 7 3.7281 -3.4434 -2.5906 11 6 4.5617 -4.6480 -2.5824 12 1 4.2777 -5.2985 -1.7551 13 6 6.0541 -4.2667 -2.4795 14 7 6.7528 -5.2522 -3.3440 15 6 8.0725 -4.7522 -3.7521 16 6 8.8023 -5.8265 -4.5166 17 8 8.2751 -6.9028 -4.7027 18 7 10.0407 -5.5912 -4.9935 19 6 10.7048 -6.5686 -5.6885 20 1 10.2357 -7.5273 -5.8535 21 6 11.9813 -6.3258 -6.1806 22 7 12.5519 -5.1590 -5.9802 23 14 12.8865 -7.6579 -7.1270 24 1 12.0326 -8.8695 -7.2153 25 1 13.1957 -7.1700 -8.4951 26 1 14.1506 -7.9928 -6.4235 27 6 5.8560 -5.4081 -4.5181 28 6 4.4314 -5.3989 -3.9235 29 1 4.0852 -6.4185 -3.7545 30 8 3.5326 -4.7083 -4.7937 31 1 -0.5401 0.9353 -0.0004 32 1 -0.5400 -0.9354 -0.0045 33 1 1.3551 2.1336 0.0005 34 1 2.6901 1.3628 0.8900 35 1 2.6901 1.3629 -0.8899 36 1 2.9742 -1.1991 0.5889 37 1 1.4386 -2.0856 0.4335 38 1 0.5992 -2.7733 -1.7699 39 1 0.5282 -1.0579 -2.2393 40 1 1.4080 -2.2238 -3.2569 41 1 3.4947 -3.0208 -3.4320 42 1 6.2143 -3.2544 -2.8507 43 1 6.3985 -4.3535 -1.4490 44 1 7.9482 -3.8751 -4.3872 45 1 8.6480 -4.4814 -2.8670 46 1 10.4621 -4.7303 -4.8449 47 1 13.4432 -4.9897 -6.3233 48 1 6.0514 -6.3544 -5.0226 49 1 5.9847 -4.5757 -5.2101 50 1 3.4118 -5.1348 -5.6532 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220190767.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:37 Heat of formation + Delta-G solvation = -103.068544 kcal Electronic energy + Delta-G solvation = -29635.648714 eV Core-core repulsion = 25470.102635 eV Total energy + Delta-G solvation = -4165.546079 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.49474 -39.22055 -37.93759 -36.97998 -35.82892 -34.38937 -33.84923 -33.03742 -31.29859 -30.17899 -28.08223 -27.61149 -27.31578 -26.51266 -24.41451 -23.55825 -21.51711 -20.70761 -20.27858 -19.21503 -18.72000 -17.91826 -17.66864 -17.21707 -16.12354 -16.03842 -15.75772 -15.35677 -14.96032 -14.92776 -14.71229 -14.54058 -14.29515 -14.02774 -13.74179 -13.67755 -13.45679 -13.28119 -12.99811 -12.89129 -12.71754 -12.37296 -12.13423 -12.07299 -11.95562 -11.58333 -11.55500 -11.47004 -11.36372 -11.30854 -11.19720 -11.11129 -10.87807 -10.36260 -10.25114 -10.11181 -9.86400 -9.52882 -9.34022 -9.15474 -8.58670 -8.09715 -7.97765 -6.43945 -3.84905 1.87442 2.51958 2.93357 3.14508 3.25304 3.32311 3.84217 3.87810 4.10098 4.28862 4.41355 4.49813 4.55150 4.58776 4.59117 4.75103 4.83958 5.05665 5.08052 5.12869 5.17786 5.22000 5.26299 5.31903 5.41365 5.45635 5.47270 5.51167 5.61891 5.62727 5.65074 5.73998 5.81605 5.84007 5.88260 5.93240 5.96582 6.20264 6.22319 6.30316 6.33893 6.55596 6.94918 7.07853 7.39616 7.46298 7.53185 8.03690 8.14206 8.58985 9.15727 9.51762 10.03175 10.73867 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024122 B = 0.001915 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.471488 B =14615.311866 C =15193.881859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.122 4.122 3 C -0.121 4.121 4 C -0.068 4.068 5 C -0.103 4.103 6 H 0.096 0.904 7 C -0.146 4.146 8 C 0.516 3.484 9 O -0.542 6.542 10 N -0.708 5.708 11 C 0.151 3.849 12 H 0.106 0.894 13 C 0.020 3.980 14 N -0.478 5.478 15 C 0.036 3.964 16 C 0.445 3.555 17 O -0.579 6.579 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.006 3.994 28 C 0.094 3.906 29 H 0.078 0.922 30 O -0.567 6.567 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.409 0.591 42 H 0.048 0.952 43 H 0.090 0.910 44 H 0.051 0.949 45 H 0.092 0.908 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.105 0.895 49 H 0.050 0.950 50 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.384 12.168 6.510 26.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.122 4.122 3 C -0.178 4.178 4 C -0.105 4.105 5 C -0.124 4.124 6 H 0.114 0.886 7 C -0.203 4.203 8 C 0.302 3.698 9 O -0.419 6.419 10 N -0.361 5.361 11 C 0.045 3.955 12 H 0.123 0.877 13 C -0.110 4.110 14 N -0.203 5.203 15 C -0.096 4.096 16 C 0.230 3.770 17 O -0.463 6.463 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.122 0.878 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.123 4.123 28 C 0.034 3.966 29 H 0.096 0.904 30 O -0.374 6.374 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.246 0.754 42 H 0.066 0.934 43 H 0.108 0.892 44 H 0.069 0.931 45 H 0.110 0.890 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.123 0.877 49 H 0.068 0.932 50 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -22.272 11.007 7.843 26.052 hybrid contribution 0.847 0.582 -1.739 2.020 sum -21.424 11.590 6.104 25.111 Atomic orbital electron populations 1.23743 0.95176 1.01790 1.02644 1.21749 0.95432 0.95626 0.99364 1.20897 1.00290 0.94272 1.02336 1.20472 1.00946 0.94286 0.94820 1.21212 0.96965 0.95932 0.98324 0.88550 1.21841 0.96113 1.02700 0.99647 1.20678 0.79803 0.85643 0.83694 1.90708 1.58243 1.61952 1.31012 1.45796 1.52172 1.28832 1.09315 1.21734 0.89975 0.86641 0.97161 0.87650 1.23611 0.92844 0.94775 0.99728 1.65109 1.00956 1.40218 1.13978 1.22074 0.91109 0.96331 1.00084 1.19655 0.83356 0.89139 0.84832 1.90495 1.67669 1.25978 1.62121 1.41864 1.13565 1.16068 1.48597 1.19745 0.97601 0.96099 1.29338 0.87842 1.25269 0.96969 0.97495 0.98264 1.69622 1.16076 1.22112 1.46485 0.85795 0.79162 0.80547 0.78811 1.19223 1.20793 1.20721 1.23913 0.91073 1.03735 0.93532 1.22856 0.89090 0.95465 0.89226 0.90378 1.86241 1.66202 1.54644 1.30263 0.88586 0.88458 0.92065 0.91481 0.91539 0.90304 0.90603 0.92178 0.91093 0.91878 0.75392 0.93360 0.89187 0.93150 0.89026 0.77498 0.91911 0.87659 0.93225 0.76528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.29 12.51 29.02 0.36 -0.92 16 2 C -0.12 -0.87 4.79 -101.06 -0.48 -1.36 16 3 C -0.12 -0.74 10.12 36.01 0.36 -0.37 16 4 C -0.07 -0.58 4.22 -27.88 -0.12 -0.70 16 5 C -0.10 -0.85 2.71 -91.78 -0.25 -1.10 16 6 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 7 C -0.15 -1.00 8.72 37.16 0.32 -0.68 16 8 C 0.52 5.89 7.15 -10.99 -0.08 5.81 16 9 O -0.54 -8.19 15.57 5.56 0.09 -8.10 16 10 N -0.71 -7.55 4.74 -52.47 -0.25 -7.80 16 11 C 0.15 1.87 3.41 -66.55 -0.23 1.65 16 12 H 0.11 1.44 7.56 -51.93 -0.39 1.05 16 13 C 0.02 0.27 6.20 -2.18 -0.01 0.26 16 14 N -0.48 -7.89 5.06 -231.41 -1.17 -9.06 16 15 C 0.04 0.64 5.30 -4.97 -0.03 0.61 16 16 C 0.44 10.38 7.58 -10.98 -0.08 10.30 16 17 O -0.58 -15.30 14.42 5.55 0.08 -15.22 16 18 N -0.56 -14.19 5.29 -10.96 -0.06 -14.25 16 19 C -0.30 -8.25 9.68 -14.94 -0.14 -8.39 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 23 Si 0.93 20.91 29.55 -169.99 -5.02 15.88 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 C 0.01 0.09 5.54 -2.18 -0.01 0.08 16 28 C 0.09 1.09 4.42 -25.35 -0.11 0.97 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 O -0.57 -5.24 11.53 -35.23 -0.41 -5.64 16 31 H 0.10 0.54 7.83 -52.49 -0.41 0.12 16 32 H 0.10 0.62 7.99 -52.48 -0.42 0.20 16 33 H 0.06 0.32 7.78 -51.92 -0.40 -0.08 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.77 7.95 -51.93 -0.41 0.35 16 37 H 0.08 0.72 7.99 -51.93 -0.41 0.30 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.43 6.52 -51.93 -0.34 0.09 16 40 H 0.06 0.41 7.56 -51.93 -0.39 0.01 16 41 H 0.41 3.83 6.68 -40.82 -0.27 3.55 16 42 H 0.05 0.63 7.91 -51.93 -0.41 0.22 16 43 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.05 0.82 7.88 -51.93 -0.41 0.41 16 45 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 46 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 47 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 48 H 0.11 1.82 6.91 -51.93 -0.36 1.46 16 49 H 0.05 0.72 7.77 -51.93 -0.40 0.32 16 50 H 0.39 2.26 9.12 45.56 0.42 2.67 16 LS Contribution 406.21 15.07 6.12 6.12 Total: -1.00 -32.86 406.21 -7.91 -40.77 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -7.42 Total: 14.36 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -0.59 Total: 6.63 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.75 Total: -54.80 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.24 Total: -28.97 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.86 -7.91 -40.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220190767.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.302 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds