Wall clock time and date at job start Tue Mar 31 2020 22:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 C 1.50706 * 120.00302 * 180.02562 * 2 1 3 5 5 C 1.52991 * 109.47410 * 94.99595 * 4 2 1 6 6 H 1.09002 * 109.47210 * 55.00168 * 5 4 2 7 7 C 1.52997 * 109.47372 * 295.00314 * 5 4 2 8 8 C 1.50699 * 109.47188 * 174.99943 * 5 4 2 9 9 O 1.21283 * 119.99939 * 0.02562 * 8 5 4 10 10 N 1.34778 * 120.00237 * 179.97438 * 8 5 4 11 11 C 1.46499 * 120.00231 * 180.02562 * 10 8 5 12 12 H 1.09001 * 110.28986 * 32.87254 * 11 10 8 13 13 C 1.54384 * 110.32411 * 270.64130 * 11 10 8 14 14 N 1.48554 * 104.59466 * 217.25135 * 13 11 10 15 15 C 1.46902 * 110.99983 * 159.04143 * 14 13 11 16 16 C 1.50705 * 109.47114 * 174.70742 * 15 14 13 17 17 O 1.21287 * 119.99745 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99884 * 179.97438 * 16 15 14 19 19 C 1.37099 * 119.99954 * 179.97438 * 18 16 15 20 20 H 1.08001 * 119.99345 * 359.97438 * 19 18 16 21 21 C 1.38942 * 119.99985 * 179.97438 * 19 18 16 22 22 N 1.31418 * 120.00024 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99844 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47240 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47000 * 120.00216 * 23 21 19 26 26 H 1.48496 * 109.47013 * 239.99968 * 23 21 19 27 27 C 1.48558 * 104.22159 * 39.47970 * 14 13 11 28 28 C 1.54257 * 110.32465 * 155.00273 * 11 10 8 29 29 H 1.08997 * 110.32364 * 237.79081 * 28 11 10 30 30 O 1.42896 * 110.32371 * 359.89810 * 28 11 10 31 31 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 32 32 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 33 33 H 1.09007 * 109.46862 * 0.02562 * 3 2 1 34 34 H 1.08999 * 109.46792 * 119.99809 * 3 2 1 35 35 H 1.08995 * 109.47689 * 240.00339 * 3 2 1 36 36 H 1.08996 * 109.46892 * 215.00324 * 4 2 1 37 37 H 1.09001 * 109.46811 * 334.99425 * 4 2 1 38 38 H 1.08998 * 109.47205 * 299.99769 * 7 5 4 39 39 H 1.08996 * 109.47437 * 59.99730 * 7 5 4 40 40 H 1.09001 * 109.47295 * 180.02562 * 7 5 4 41 41 H 0.97002 * 119.99672 * 0.02562 * 10 8 5 42 42 H 1.09005 * 110.41010 * 336.02697 * 13 11 10 43 43 H 1.08996 * 110.41145 * 98.46662 * 13 11 10 44 44 H 1.09000 * 109.46787 * 294.70048 * 15 14 13 45 45 H 1.08991 * 109.47432 * 54.70395 * 15 14 13 46 46 H 0.96995 * 120.00188 * 359.97438 * 18 16 15 47 47 H 0.96997 * 119.99841 * 179.97438 * 22 21 19 48 48 H 1.09002 * 110.40943 * 201.73551 * 27 14 13 49 49 H 1.09003 * 110.50943 * 79.35528 * 27 14 13 50 50 H 0.96704 * 113.99612 * 179.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6834 -1.4377 6 1 2.9770 -0.8640 -1.9010 7 6 1.1488 -1.9539 -2.2331 8 6 3.2854 -2.9222 -1.4292 9 8 3.5767 -3.4509 -0.3772 10 7 3.7281 -3.4434 -2.5906 11 6 4.5617 -4.6480 -2.5824 12 1 4.2777 -5.2985 -1.7551 13 6 6.0541 -4.2667 -2.4795 14 7 6.7528 -5.2522 -3.3440 15 6 8.0725 -4.7522 -3.7521 16 6 8.8023 -5.8265 -4.5166 17 8 8.2751 -6.9028 -4.7027 18 7 10.0407 -5.5912 -4.9935 19 6 10.7048 -6.5686 -5.6885 20 1 10.2357 -7.5273 -5.8535 21 6 11.9813 -6.3258 -6.1806 22 7 12.5519 -5.1590 -5.9802 23 14 12.8865 -7.6579 -7.1270 24 1 12.0326 -8.8695 -7.2153 25 1 13.1957 -7.1700 -8.4951 26 1 14.1506 -7.9928 -6.4235 27 6 5.8560 -5.4081 -4.5181 28 6 4.4314 -5.3989 -3.9235 29 1 4.0852 -6.4185 -3.7545 30 8 3.5326 -4.7083 -4.7937 31 1 -0.5401 0.9353 -0.0004 32 1 -0.5400 -0.9354 -0.0045 33 1 1.3551 2.1336 0.0005 34 1 2.6901 1.3628 0.8900 35 1 2.6901 1.3629 -0.8899 36 1 2.9742 -1.1991 0.5889 37 1 1.4386 -2.0856 0.4335 38 1 0.5992 -2.7733 -1.7699 39 1 0.5282 -1.0579 -2.2393 40 1 1.4080 -2.2238 -3.2569 41 1 3.4947 -3.0208 -3.4320 42 1 6.2143 -3.2544 -2.8507 43 1 6.3985 -4.3535 -1.4490 44 1 7.9482 -3.8751 -4.3872 45 1 8.6480 -4.4814 -2.8670 46 1 10.4621 -4.7303 -4.8449 47 1 13.4432 -4.9897 -6.3233 48 1 6.0514 -6.3544 -5.0226 49 1 5.9847 -4.5757 -5.2101 50 1 3.4118 -5.1348 -5.6532 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220190767.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:37 Heat of formation + Delta-G solvation = -129.444365 kcal Electronic energy + Delta-G solvation = -29636.792455 eV Core-core repulsion = 25470.102635 eV Total energy + Delta-G solvation = -4166.689820 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.48742 -40.48208 -39.47992 -37.65959 -36.89014 -35.92645 -35.29542 -33.72163 -33.28949 -31.38936 -29.16093 -28.19027 -28.03929 -27.83567 -26.10331 -24.43551 -22.76024 -21.69678 -21.14863 -21.00376 -19.89402 -19.29951 -18.54855 -18.10322 -17.79955 -17.02525 -16.69858 -16.59541 -16.33529 -16.21756 -15.83018 -15.64914 -15.33535 -15.24594 -15.00586 -14.76187 -14.36293 -14.18423 -14.11357 -13.88101 -13.73762 -13.46601 -13.39687 -13.20758 -12.98921 -12.92167 -12.57416 -12.55545 -12.47165 -12.40786 -12.19550 -12.12373 -12.04637 -11.89169 -11.81452 -11.49713 -11.05058 -10.78091 -10.37917 -10.11330 -10.01931 -9.86642 -9.48753 -8.47432 -5.96140 1.34307 1.36066 1.41625 1.55631 1.62196 2.01948 2.03939 2.28796 2.78051 3.12466 3.18823 3.30632 3.47477 3.67064 3.75938 3.90115 3.96305 4.03463 4.16283 4.18682 4.25246 4.26270 4.33873 4.38743 4.47371 4.49650 4.62324 4.68736 4.82237 4.83638 4.86920 4.89586 4.93707 4.96230 4.98863 5.10284 5.17976 5.22642 5.30102 5.37827 5.40750 5.72646 5.78185 5.79505 6.02811 6.03277 6.58219 6.59038 6.75576 7.11923 7.27542 7.54755 8.10006 8.70251 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024122 B = 0.001915 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.471488 B =14615.311866 C =15193.881859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 C -0.121 4.121 4 C -0.065 4.065 5 C -0.095 4.095 6 H 0.115 0.885 7 C -0.140 4.140 8 C 0.513 3.487 9 O -0.583 6.583 10 N -0.697 5.697 11 C 0.153 3.847 12 H 0.092 0.908 13 C 0.027 3.973 14 N -0.501 5.501 15 C 0.048 3.952 16 C 0.444 3.556 17 O -0.613 6.613 18 N -0.574 5.574 19 C -0.331 4.331 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.272 1.272 27 C 0.009 3.991 28 C 0.112 3.888 29 H 0.082 0.918 30 O -0.562 6.562 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.419 0.581 42 H 0.060 0.940 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.107 0.893 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.075 0.925 49 H 0.054 0.946 50 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.450 13.737 5.763 27.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.130 4.130 3 C -0.178 4.178 4 C -0.102 4.102 5 C -0.116 4.116 6 H 0.133 0.867 7 C -0.197 4.197 8 C 0.301 3.699 9 O -0.463 6.463 10 N -0.350 5.350 11 C 0.047 3.953 12 H 0.110 0.890 13 C -0.102 4.102 14 N -0.226 5.226 15 C -0.084 4.084 16 C 0.231 3.769 17 O -0.499 6.499 18 N -0.211 5.211 19 C -0.460 4.460 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.197 1.197 25 H -0.196 1.196 26 H -0.198 1.198 27 C -0.119 4.119 28 C 0.052 3.948 29 H 0.100 0.900 30 O -0.370 6.370 31 H 0.127 0.873 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.257 0.743 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.125 0.875 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.093 0.907 49 H 0.073 0.927 50 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -23.359 12.610 7.067 27.470 hybrid contribution 1.112 0.091 -1.485 1.857 sum -22.247 12.701 5.582 26.218 Atomic orbital electron populations 1.23879 0.94992 1.02452 1.01493 1.21720 0.95648 0.95255 1.00403 1.20916 1.00491 0.93950 1.02442 1.20396 1.00154 0.94892 0.94806 1.21222 0.97221 0.94675 0.98531 0.86743 1.21815 0.95274 1.02992 0.99641 1.21272 0.79447 0.86112 0.83054 1.90694 1.59811 1.63316 1.32476 1.45704 1.51460 1.28124 1.09686 1.21547 0.89436 0.87218 0.97146 0.89024 1.23556 0.93274 0.94636 0.98727 1.65015 1.00885 1.41601 1.15094 1.21923 0.91567 0.94671 1.00193 1.20610 0.82710 0.89825 0.83781 1.90472 1.68330 1.27963 1.63157 1.41927 1.14298 1.15839 1.49086 1.19697 0.98741 0.96170 1.31432 0.90196 1.26046 0.97103 0.99637 0.98576 1.69682 1.16535 1.23252 1.46747 0.84861 0.77818 0.77686 0.77911 1.19741 1.19559 1.19760 1.23836 0.92722 1.02249 0.93137 1.22522 0.87640 0.95746 0.88908 0.90014 1.86208 1.65054 1.54562 1.31174 0.87269 0.88475 0.91009 0.91811 0.91051 0.91938 0.91982 0.93018 0.89864 0.90978 0.74255 0.92160 0.89865 0.90950 0.87488 0.77076 0.91325 0.90685 0.92737 0.74474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.14 12.51 67.79 0.85 -1.29 16 2 C -0.13 -1.67 4.79 -16.48 -0.08 -1.75 16 3 C -0.12 -1.26 10.12 71.24 0.72 -0.54 16 4 C -0.06 -1.08 4.22 29.85 0.13 -0.95 16 5 C -0.10 -1.42 2.71 -11.54 -0.03 -1.45 16 6 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 7 C -0.14 -1.62 8.72 71.98 0.63 -0.99 16 8 C 0.51 11.23 7.15 87.66 0.63 11.86 16 9 O -0.58 -17.70 15.57 -3.04 -0.05 -17.75 16 10 N -0.70 -13.68 4.74 -438.29 -2.08 -15.76 16 11 C 0.15 3.65 3.41 45.89 0.16 3.80 16 12 H 0.09 2.49 7.56 -2.39 -0.02 2.47 16 13 C 0.03 0.71 6.20 86.45 0.54 1.25 16 14 N -0.50 -16.29 5.06 -886.05 -4.48 -20.77 16 15 C 0.05 1.68 5.30 85.56 0.45 2.13 16 16 C 0.44 21.00 7.58 87.66 0.66 21.66 16 17 O -0.61 -33.36 14.42 -3.05 -0.04 -33.41 16 18 N -0.57 -29.36 5.29 -306.99 -1.62 -30.98 16 19 C -0.33 -18.69 9.68 84.04 0.81 -17.87 16 20 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 21 C -0.01 -0.75 5.50 84.92 0.47 -0.28 16 22 N -0.92 -49.57 13.05 21.66 0.28 -49.29 16 23 Si 0.99 42.74 29.55 68.60 2.03 44.77 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 C 0.01 0.26 5.54 86.45 0.48 0.74 16 28 C 0.11 2.46 4.42 31.49 0.14 2.60 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 30 O -0.56 -8.96 11.53 -148.98 -1.72 -10.68 16 31 H 0.11 0.94 7.83 -2.91 -0.02 0.92 16 32 H 0.10 1.08 7.99 -2.91 -0.02 1.05 16 33 H 0.07 0.59 7.78 -2.38 -0.02 0.57 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.06 1.23 7.95 -2.39 -0.02 1.21 16 37 H 0.06 1.18 7.99 -2.39 -0.02 1.16 16 38 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.08 0.79 6.52 -2.39 -0.02 0.77 16 40 H 0.07 0.72 7.56 -2.39 -0.02 0.70 16 41 H 0.42 6.71 6.68 -92.71 -0.62 6.09 16 42 H 0.06 1.45 7.91 -2.38 -0.02 1.44 16 43 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.07 2.23 7.88 -2.39 -0.02 2.21 16 45 H 0.11 3.42 8.13 -2.39 -0.02 3.40 16 46 H 0.40 19.27 7.90 -92.71 -0.73 18.54 16 47 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 48 H 0.07 2.65 6.91 -2.39 -0.02 2.63 16 49 H 0.05 1.51 7.77 -2.39 -0.02 1.49 16 50 H 0.40 3.66 9.12 -74.05 -0.68 2.98 16 Total: -1.00 -71.90 406.21 -2.20 -74.10 By element: Atomic # 1 Polarization: 41.91 SS G_CDS: -1.06 Total: 40.85 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: 6.55 Total: 18.92 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -7.90 Total: -116.81 kcal Atomic # 8 Polarization: -60.03 SS G_CDS: -1.81 Total: -61.84 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -71.90 -2.20 -74.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220190767.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.344 kcal (2) G-P(sol) polarization free energy of solvation -71.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds