Wall clock time and date at job start Tue Mar 31 2020 23:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47475 * 2 1 4 4 C 1.52997 * 109.47582 * 120.00257 * 2 1 3 5 5 C 1.50705 * 109.46890 * 295.00196 * 4 2 1 6 6 O 1.21273 * 120.00273 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99776 * 179.97438 * 5 4 2 8 8 C 1.46499 * 120.00096 * 179.97438 * 7 5 4 9 9 H 1.09003 * 110.28291 * 34.30281 * 8 7 5 10 10 C 1.54381 * 110.32350 * 272.17570 * 8 7 5 11 11 N 1.48721 * 104.51449 * 217.31774 * 10 8 7 12 12 C 1.46897 * 111.01466 * 158.96604 * 11 10 8 13 13 C 1.50702 * 109.47260 * 174.61760 * 12 11 10 14 14 O 1.21295 * 119.99694 * 0.02562 * 13 12 11 15 15 N 1.34770 * 120.00427 * 180.02562 * 13 12 11 16 16 C 1.37096 * 120.00620 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99678 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00450 * 180.02562 * 16 15 13 19 19 N 1.31418 * 119.99657 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00105 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47145 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46962 * 119.99893 * 20 18 16 23 23 H 1.48500 * 109.46968 * 239.99831 * 20 18 16 24 24 C 1.48565 * 104.28696 * 39.36442 * 11 10 8 25 25 C 1.54261 * 110.32547 * 156.42368 * 8 7 5 26 26 H 1.09000 * 110.32624 * 237.79629 * 25 8 7 27 27 O 1.42900 * 110.32291 * 0.02562 * 25 8 7 28 28 C 1.53003 * 109.46999 * 240.00445 * 2 1 3 29 29 C 1.53001 * 117.51964 * 111.28362 * 28 2 1 30 30 C 1.52999 * 60.00190 * 107.47982 * 29 28 2 31 31 H 1.09000 * 109.47179 * 59.99381 * 1 2 3 32 32 H 1.08996 * 109.47327 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46840 * 300.00158 * 1 2 3 34 34 H 1.08999 * 109.46942 * 54.99811 * 4 2 1 35 35 H 1.08994 * 109.47446 * 174.99837 * 4 2 1 36 36 H 0.97001 * 119.99771 * 0.02562 * 7 5 4 37 37 H 1.08990 * 110.41135 * 336.02579 * 10 8 7 38 38 H 1.09003 * 110.41188 * 98.47373 * 10 8 7 39 39 H 1.08992 * 109.47337 * 294.61835 * 12 11 10 40 40 H 1.09000 * 109.47016 * 54.62005 * 12 11 10 41 41 H 0.97006 * 119.99629 * 359.97438 * 15 13 12 42 42 H 0.96996 * 119.99224 * 180.02562 * 19 18 16 43 43 H 1.09008 * 110.40908 * 201.79526 * 24 11 10 44 44 H 1.09000 * 110.50967 * 79.40094 * 24 11 10 45 45 H 0.96692 * 114.00132 * 179.97438 * 27 25 8 46 46 H 1.09002 * 115.54973 * 325.58146 * 28 2 1 47 47 H 1.09001 * 117.49733 * 214.97413 * 29 28 2 48 48 H 1.08995 * 117.49577 * 359.97438 * 29 28 2 49 49 H 1.09004 * 117.50150 * 252.51496 * 30 29 28 50 50 H 1.09004 * 117.49681 * 107.48417 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6414 0.0570 2.4766 6 8 1.0117 1.0873 2.3633 7 7 1.9846 -0.3920 3.7001 8 6 1.5975 0.3648 4.8933 9 1 0.6279 0.8392 4.7418 10 6 2.6680 1.4264 5.2255 11 7 2.7276 1.4433 6.7114 12 6 4.0002 2.0069 7.1812 13 6 3.9713 2.1301 8.6829 14 8 2.9873 1.7821 9.3010 15 7 5.0385 2.6269 9.3391 16 6 5.0123 2.7385 10.7052 17 1 4.1363 2.4287 11.2556 18 6 6.1125 3.2512 11.3817 19 7 7.1783 3.6286 10.7119 20 14 6.0765 3.4039 13.2431 21 1 4.7711 2.9145 13.7547 22 1 7.1737 2.5918 13.8276 23 1 6.2557 4.8273 13.6265 24 6 2.6024 0.0147 7.0996 25 6 1.5535 -0.5627 6.1252 26 1 0.5628 -0.5421 6.5794 27 8 1.9032 -1.8976 5.7541 28 6 2.0399 -0.7212 -1.2493 29 6 2.7399 0.1227 -2.3165 30 6 3.5550 -0.8262 -1.4355 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.6055 -1.7198 1.2950 35 1 3.1263 -0.7995 1.2055 36 1 2.4885 -1.2159 3.7906 37 1 3.6329 1.1363 4.8100 38 1 2.3668 2.4022 4.8444 39 1 4.8191 1.3508 6.8863 40 1 4.1467 2.9922 6.7386 41 1 5.8255 2.9048 8.8447 42 1 7.9463 3.9861 11.1841 43 1 2.2528 -0.0703 8.1286 44 1 3.5564 -0.4987 6.9794 45 1 1.8929 -2.5257 6.4892 46 1 1.4318 -1.5594 -1.5895 47 1 2.5922 -0.1603 -3.3587 48 1 2.8369 1.1920 -2.1288 49 1 4.1884 -0.3812 -0.6680 50 1 3.9435 -1.7335 -1.8981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221107327.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:17 Heat of formation + Delta-G solvation = -118.890742 kcal Electronic energy + Delta-G solvation = -29554.671018 eV Core-core repulsion = 25388.438838 eV Total energy + Delta-G solvation = -4166.232181 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.41785 -40.46675 -39.53441 -38.53763 -36.88103 -35.92729 -35.22578 -34.04072 -33.30324 -31.64190 -29.53434 -28.66790 -27.71006 -25.99181 -24.41902 -23.17538 -22.79966 -21.98687 -21.43250 -21.00627 -20.51486 -19.89189 -18.64044 -18.04433 -17.80205 -17.10993 -16.62417 -16.59102 -16.45669 -16.29185 -16.00411 -15.81183 -15.62382 -15.11200 -15.03301 -14.69620 -14.45274 -14.14318 -14.07430 -13.81741 -13.70756 -13.45098 -13.22731 -13.01812 -12.95281 -12.56227 -12.55057 -12.41047 -12.39405 -12.22791 -12.12272 -12.07924 -11.99876 -11.73423 -11.49779 -11.08582 -11.04389 -10.86095 -10.64942 -10.37636 -10.05463 -10.02032 -9.48287 -8.47615 -5.96300 1.35953 1.41478 1.55548 1.69470 2.02163 2.04199 2.28723 2.77160 2.96176 3.13703 3.18644 3.31156 3.48656 3.69293 3.76465 3.86551 4.03037 4.04672 4.12746 4.17903 4.23982 4.25043 4.33664 4.35887 4.43729 4.48077 4.56387 4.62671 4.66148 4.76977 4.83931 4.85509 4.88524 4.92992 4.98418 5.06214 5.19306 5.23506 5.31661 5.38579 5.40620 5.45143 5.57033 5.72807 5.78980 6.02667 6.58779 6.63873 6.76942 7.11731 7.35052 7.54510 8.09769 8.70085 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021631 B = 0.001912 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.146669 B =14639.843863 C =15282.293102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.042 4.042 3 H 0.056 0.944 4 C -0.126 4.126 5 C 0.507 3.493 6 O -0.577 6.577 7 N -0.701 5.701 8 C 0.155 3.845 9 H 0.091 0.909 10 C 0.028 3.972 11 N -0.501 5.501 12 C 0.048 3.952 13 C 0.444 3.556 14 O -0.613 6.613 15 N -0.574 5.574 16 C -0.331 4.331 17 H 0.080 0.920 18 C -0.015 4.015 19 N -0.921 5.921 20 Si 0.994 3.006 21 H -0.273 1.273 22 H -0.270 1.270 23 H -0.272 1.272 24 C 0.009 3.991 25 C 0.112 3.888 26 H 0.082 0.918 27 O -0.562 6.562 28 C -0.148 4.148 29 C -0.187 4.187 30 C -0.178 4.178 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.419 0.581 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.395 0.605 42 H 0.277 0.723 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.403 0.597 46 H 0.114 0.886 47 H 0.102 0.898 48 H 0.086 0.914 49 H 0.093 0.907 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.386 -13.643 -23.431 27.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.061 4.061 3 H 0.075 0.925 4 C -0.166 4.166 5 C 0.296 3.704 6 O -0.457 6.457 7 N -0.355 5.355 8 C 0.048 3.952 9 H 0.109 0.891 10 C -0.101 4.101 11 N -0.227 5.227 12 C -0.083 4.083 13 C 0.231 3.769 14 O -0.499 6.499 15 N -0.211 5.211 16 C -0.460 4.460 17 H 0.098 0.902 18 C -0.214 4.214 19 N -0.562 5.562 20 Si 0.817 3.183 21 H -0.197 1.197 22 H -0.195 1.195 23 H -0.198 1.198 24 C -0.120 4.120 25 C 0.052 3.948 26 H 0.100 0.900 27 O -0.370 6.370 28 C -0.166 4.166 29 C -0.224 4.224 30 C -0.214 4.214 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.257 0.743 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.125 0.875 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.072 0.928 45 H 0.255 0.745 46 H 0.132 0.868 47 H 0.120 0.880 48 H 0.104 0.896 49 H 0.111 0.889 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.668 -12.492 -23.370 27.587 hybrid contribution 1.417 -0.290 1.252 1.913 sum -6.251 -12.782 -22.118 26.300 Atomic orbital electron populations 1.21862 0.94843 1.01868 1.01833 1.20383 0.96050 0.98034 0.91605 0.92512 1.21739 1.04093 1.00491 0.90241 1.21362 0.78151 0.85385 0.85504 1.90672 1.41571 1.26397 1.87042 1.45765 1.57623 1.27934 1.04173 1.21511 0.98385 0.91090 0.84229 0.89059 1.23579 0.98793 1.00313 0.87440 1.65036 1.32007 1.16981 1.08631 1.21916 0.91807 1.02516 0.92106 1.20609 0.83563 0.82538 0.90222 1.90473 1.34514 1.54867 1.70071 1.41927 1.15654 1.56425 1.07140 1.19697 1.02070 1.41250 0.83011 0.90187 1.26056 0.94362 0.96054 1.04936 1.69684 1.05465 1.42929 1.38137 0.84857 0.78297 0.78249 0.76848 1.19727 1.19540 1.19769 1.23841 0.99240 0.88269 1.00607 1.22527 0.97194 0.82631 0.92482 0.89991 1.86200 1.92345 1.17913 1.40565 1.22341 0.95273 1.02081 0.96930 1.23068 1.04990 0.97502 0.96818 1.23034 0.93371 1.02028 1.03008 0.92786 0.91964 0.93106 0.86739 0.87184 0.74301 0.92300 0.89929 0.91010 0.87540 0.77083 0.91324 0.90717 0.92806 0.74483 0.86752 0.88006 0.89580 0.88860 0.87623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.92 71.98 0.64 -1.86 16 2 C -0.04 -0.64 2.19 -10.79 -0.02 -0.67 16 3 H 0.06 1.13 7.71 -2.38 -0.02 1.11 16 4 C -0.13 -1.69 5.09 29.85 0.15 -1.53 16 5 C 0.51 10.52 7.54 87.66 0.66 11.19 16 6 O -0.58 -16.59 13.64 -3.01 -0.04 -16.63 16 7 N -0.70 -13.38 4.87 -438.29 -2.14 -15.51 16 8 C 0.15 3.64 3.38 45.89 0.16 3.80 16 9 H 0.09 2.44 7.60 -2.39 -0.02 2.42 16 10 C 0.03 0.73 6.22 86.42 0.54 1.27 16 11 N -0.50 -16.38 5.06 -885.59 -4.48 -20.86 16 12 C 0.05 1.69 5.30 85.56 0.45 2.15 16 13 C 0.44 21.06 7.59 87.66 0.66 21.73 16 14 O -0.61 -33.44 14.42 -3.07 -0.04 -33.48 16 15 N -0.57 -29.44 5.29 -306.99 -1.62 -31.06 16 16 C -0.33 -18.71 9.68 84.04 0.81 -17.90 16 17 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 18 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 19 N -0.92 -49.66 13.05 21.66 0.28 -49.38 16 20 Si 0.99 42.80 29.55 68.60 2.03 44.83 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 24 C 0.01 0.26 5.54 86.45 0.48 0.74 16 25 C 0.11 2.45 4.42 31.49 0.14 2.59 16 26 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 27 O -0.56 -8.97 11.51 -148.98 -1.71 -10.69 16 28 C -0.15 -1.72 5.15 -10.79 -0.06 -1.77 16 29 C -0.19 -2.20 10.18 30.59 0.31 -1.89 16 30 C -0.18 -1.83 9.67 30.60 0.30 -1.53 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 1.15 5.95 -2.39 -0.01 1.14 16 34 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.11 1.12 7.13 -2.39 -0.02 1.10 16 36 H 0.42 6.48 7.22 -92.71 -0.67 5.81 16 37 H 0.06 1.44 7.91 -2.39 -0.02 1.42 16 38 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.07 2.23 7.88 -2.39 -0.02 2.21 16 40 H 0.11 3.43 8.13 -2.39 -0.02 3.41 16 41 H 0.40 19.33 7.90 -92.70 -0.73 18.60 16 42 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 43 H 0.07 2.65 6.91 -2.38 -0.02 2.63 16 44 H 0.05 1.50 7.76 -2.39 -0.02 1.48 16 45 H 0.40 3.68 9.12 -74.06 -0.68 3.01 16 46 H 0.11 1.12 8.11 -2.39 -0.02 1.10 16 47 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.09 1.15 8.05 -2.39 -0.02 1.13 16 49 H 0.09 0.99 7.59 -2.39 -0.02 0.97 16 50 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -71.64 402.52 -3.14 -74.77 By element: Atomic # 1 Polarization: 43.11 SS G_CDS: -1.10 Total: 42.01 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 5.69 Total: 15.99 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -7.96 Total: -116.81 kcal Atomic # 8 Polarization: -59.00 SS G_CDS: -1.80 Total: -60.80 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -71.64 -3.14 -74.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221107327.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.119 kcal (2) G-P(sol) polarization free energy of solvation -71.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds