Wall clock time and date at job start Tue Mar 31 2020 22:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.57181 * 2 1 4 4 C 1.53093 * 109.52063 * 239.84032 * 2 1 3 5 5 O 1.42904 * 109.41044 * 182.48280 * 4 2 1 6 6 C 1.42906 * 114.09508 * 61.16445 * 5 4 2 7 7 C 1.53098 * 109.41354 * 298.83274 * 6 5 4 8 8 C 1.53176 * 109.52172 * 120.15219 * 2 1 3 9 9 H 1.09007 * 109.54152 * 56.93652 * 8 2 1 10 10 N 1.46499 * 109.54685 * 296.75764 * 8 2 1 11 11 C 1.34775 * 120.00128 * 155.27661 * 10 8 2 12 12 O 1.21357 * 119.99972 * 359.71792 * 11 10 8 13 13 C 1.49443 * 120.00119 * 179.72400 * 11 10 8 14 14 O 1.21352 * 120.00290 * 353.34877 * 13 11 10 15 15 N 1.34773 * 120.00380 * 173.35781 * 13 11 10 16 16 C 1.47078 * 120.88587 * 181.22104 * 15 13 11 17 17 C 1.53696 * 108.28084 * 128.75202 * 16 15 13 18 18 N 1.46893 * 109.25691 * 54.08119 * 17 16 15 19 19 C 1.46900 * 111.00199 * 172.60952 * 18 17 16 20 20 C 1.50693 * 109.46999 * 59.77005 * 19 18 17 21 21 H 1.08003 * 120.00150 * 355.26598 * 20 19 18 22 22 C 1.37885 * 120.00008 * 175.26459 * 20 19 18 23 23 N 1.31511 * 119.99713 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99890 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47445 * 59.99708 * 24 22 20 26 26 H 1.48506 * 109.47035 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47294 * 299.99856 * 24 22 20 28 28 C 1.46897 * 111.27024 * 296.75889 * 18 17 16 29 29 C 1.47080 * 120.88104 * 1.49434 * 15 13 11 30 30 H 1.09008 * 109.47273 * 299.84734 * 1 2 3 31 31 H 1.09001 * 109.47496 * 59.84323 * 1 2 3 32 32 H 1.09003 * 109.47254 * 179.84584 * 1 2 3 33 33 H 1.08997 * 109.48205 * 302.46727 * 4 2 1 34 34 H 1.09003 * 109.47824 * 62.50663 * 4 2 1 35 35 H 1.08990 * 109.48535 * 58.81944 * 6 5 4 36 36 H 1.09003 * 109.47611 * 178.84794 * 6 5 4 37 37 H 1.08994 * 109.52208 * 297.71132 * 7 6 5 38 38 H 1.08994 * 109.52026 * 177.51591 * 7 6 5 39 39 H 0.96996 * 119.99564 * 334.99508 * 10 8 2 40 40 H 1.09009 * 109.62717 * 248.52076 * 16 15 13 41 41 H 1.08999 * 109.62807 * 9.09787 * 16 15 13 42 42 H 1.08997 * 109.64287 * 294.07983 * 17 16 15 43 43 H 1.08999 * 109.44641 * 173.96112 * 17 16 15 44 44 H 1.08997 * 109.47076 * 179.77355 * 19 18 17 45 45 H 1.09006 * 109.46805 * 299.77269 * 19 18 17 46 46 H 0.96998 * 119.99472 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.49581 * 303.14572 * 28 18 17 48 48 H 1.09006 * 109.49348 * 183.06031 * 28 18 17 49 49 H 1.09000 * 109.62939 * 350.89775 * 29 15 13 50 50 H 1.09001 * 109.63274 * 111.47648 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0415 -0.7249 -1.2476 5 8 3.4694 -0.7743 -1.2163 6 6 4.0043 -1.4816 -0.0956 7 6 3.5716 -0.7870 1.1983 8 6 2.0418 -0.7252 1.2484 9 1 1.6354 -1.7363 1.2750 10 7 1.6198 0.0044 2.4466 11 6 1.4992 -0.6433 3.6224 12 8 1.7353 -1.8319 3.6874 13 6 1.0747 0.1022 4.8460 14 8 0.9554 1.3093 4.8103 15 7 0.8244 -0.5660 5.9894 16 6 0.3798 0.1451 7.1976 17 6 -0.8825 -0.5516 7.7300 18 7 -0.6037 -1.9814 7.9188 19 6 -1.7250 -2.6524 8.5899 20 6 -2.9710 -2.5044 7.7553 21 1 -2.9523 -1.9020 6.8591 22 6 -4.1349 -3.1383 8.1357 23 7 -4.1575 -3.8723 9.2267 24 14 -5.6792 -2.9555 7.1008 25 1 -5.4215 -3.4700 5.7318 26 1 -6.7847 -3.7299 7.7202 27 1 -6.0590 -1.5218 7.0273 28 6 -0.2865 -2.6355 6.6423 29 6 0.9944 -2.0251 6.0637 30 1 -0.3634 0.5115 0.8914 31 1 -0.3634 0.5163 -0.8886 32 1 -0.3634 -1.0277 -0.0028 33 1 1.6431 -1.7393 -1.2676 34 1 1.7158 -0.1885 -2.1389 35 1 3.6315 -2.5058 -0.1006 36 1 5.0925 -1.4905 -0.1572 37 1 3.9779 0.2240 1.2224 38 1 3.9416 -1.3499 2.0551 39 1 1.4311 0.9544 2.3946 40 1 1.1659 0.1119 7.9522 41 1 0.1505 1.1813 6.9491 42 1 -1.6966 -0.4310 7.0153 43 1 -1.1672 -0.1075 8.6839 44 1 -1.4939 -3.7104 8.7135 45 1 -1.8869 -2.1991 9.5679 46 1 -4.9762 -4.3185 9.4941 47 1 -1.1089 -2.4860 5.9427 48 1 -0.1383 -3.7028 6.8075 49 1 1.1716 -2.4244 5.0651 50 1 1.8384 -2.2629 6.7113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261961406.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:32 Heat of formation + Delta-G solvation = -116.455953 kcal Electronic energy + Delta-G solvation = -30842.494438 eV Core-core repulsion = 26676.367838 eV Total energy + Delta-G solvation = -4166.126600 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.19833 -40.82320 -39.67337 -39.03643 -36.95773 -35.96527 -34.36492 -33.92359 -32.51957 -32.12675 -30.11230 -27.98960 -27.54669 -26.54177 -25.03042 -24.45582 -23.52699 -23.32691 -21.90572 -21.55468 -20.55488 -18.93489 -18.40697 -18.20141 -17.50266 -17.24393 -17.05090 -16.80121 -16.61610 -16.06588 -15.99676 -15.81993 -15.68069 -15.47103 -15.23164 -14.99472 -14.92434 -14.58798 -14.33166 -13.94039 -13.78451 -13.60084 -13.11481 -13.03112 -13.01925 -12.97883 -12.78803 -12.51286 -12.46019 -12.43162 -12.16803 -12.12746 -11.93758 -11.86587 -11.84744 -11.68265 -11.36424 -10.72685 -10.64011 -10.35169 -10.15451 -9.91864 -9.09481 -8.19564 -6.38971 0.24302 1.17784 1.33923 1.34445 1.42971 2.02809 2.33545 2.33737 2.92094 3.05634 3.16347 3.30512 3.46654 3.68870 3.79579 3.95973 3.99825 4.06315 4.21403 4.24614 4.30339 4.33788 4.40969 4.50315 4.55061 4.59205 4.62303 4.71311 4.76832 4.80279 4.84831 4.88694 4.99142 5.00668 5.03054 5.11281 5.13835 5.18253 5.25158 5.29032 5.29293 5.42047 5.69439 5.89151 5.98425 6.11684 6.20945 6.23072 6.41907 6.60536 6.80339 6.84234 7.32502 8.82931 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014517 B = 0.002711 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.361767 B =10327.654171 C =11200.007913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 H 0.094 0.906 4 C 0.067 3.933 5 O -0.396 6.396 6 C 0.064 3.936 7 C -0.163 4.163 8 C 0.143 3.857 9 H 0.085 0.915 10 N -0.678 5.678 11 C 0.517 3.483 12 O -0.520 6.520 13 C 0.501 3.499 14 O -0.548 6.548 15 N -0.575 5.575 16 C 0.120 3.880 17 C 0.054 3.946 18 N -0.539 5.539 19 C 0.201 3.799 20 C -0.560 4.560 21 H 0.051 0.949 22 C 0.015 3.985 23 N -0.923 5.923 24 Si 0.953 3.047 25 H -0.272 1.272 26 H -0.279 1.279 27 H -0.271 1.271 28 C 0.055 3.945 29 C 0.072 3.928 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.116 0.884 35 H 0.059 0.941 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.418 0.582 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.018 0.982 43 H 0.081 0.919 44 H 0.011 0.989 45 H 0.009 0.991 46 H 0.266 0.734 47 H 0.015 0.985 48 H 0.076 0.924 49 H 0.156 0.844 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.382 7.937 -20.515 26.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 H 0.112 0.888 4 C -0.010 4.010 5 O -0.315 6.315 6 C -0.013 4.013 7 C -0.201 4.201 8 C 0.039 3.961 9 H 0.103 0.897 10 N -0.330 5.330 11 C 0.298 3.702 12 O -0.398 6.398 13 C 0.284 3.716 14 O -0.428 6.428 15 N -0.307 5.307 16 C -0.002 4.002 17 C -0.075 4.075 18 N -0.262 5.262 19 C 0.074 3.926 20 C -0.599 4.599 21 H 0.069 0.931 22 C -0.185 4.185 23 N -0.562 5.562 24 Si 0.778 3.222 25 H -0.197 1.197 26 H -0.204 1.204 27 H -0.196 1.196 28 C -0.074 4.074 29 C -0.049 4.049 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.134 0.866 35 H 0.077 0.923 36 H 0.129 0.871 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.256 0.744 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.037 0.963 43 H 0.100 0.900 44 H 0.030 0.970 45 H 0.027 0.973 46 H 0.075 0.925 47 H 0.033 0.967 48 H 0.094 0.906 49 H 0.172 0.828 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 15.898 7.661 -20.208 26.829 hybrid contribution -2.256 0.133 0.062 2.261 sum 13.642 7.795 -20.146 25.548 Atomic orbital electron populations 1.21777 0.93386 1.02502 1.02895 1.22059 0.97222 1.01327 0.93883 0.88816 1.22766 0.80247 1.00435 0.97521 1.87939 1.21098 1.76553 1.45898 1.22642 1.00264 0.94630 0.83757 1.22586 0.94816 1.03030 0.99715 1.21337 0.94912 0.96762 0.83071 0.89655 1.45811 1.65911 1.14160 1.07073 1.19998 0.78341 0.86901 0.84936 1.90355 1.50273 1.15332 1.83890 1.20222 0.79320 0.87294 0.84744 1.90716 1.53246 1.14120 1.84672 1.48203 1.62486 1.09783 1.10203 1.22023 0.96400 0.96330 0.85436 1.22321 0.95315 0.89517 1.00375 1.62464 1.39945 1.02406 1.21423 1.19429 0.86461 0.93435 0.93251 1.21914 0.97163 1.30713 1.10099 0.93131 1.25763 1.02020 0.94546 0.96131 1.70038 1.29003 1.32288 1.24865 0.85683 0.79047 0.78420 0.79001 1.19720 1.20399 1.19633 1.22258 0.95960 0.98875 0.90331 1.23350 0.96933 0.77305 1.07343 0.92973 0.90285 0.92611 0.92209 0.86618 0.92291 0.87091 0.90284 0.90776 0.74397 0.88867 0.88432 0.96341 0.90038 0.97048 0.97328 0.92474 0.96667 0.90561 0.82801 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.07 71.98 0.65 -1.10 16 2 C -0.13 -1.45 2.48 -10.70 -0.03 -1.48 16 3 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 4 C 0.07 0.73 6.13 72.01 0.44 1.17 16 5 O -0.40 -5.79 10.77 -148.98 -1.60 -7.39 16 6 C 0.06 0.79 6.84 72.02 0.49 1.28 16 7 C -0.16 -2.30 5.72 30.69 0.18 -2.13 16 8 C 0.14 2.21 1.95 45.11 0.09 2.30 16 9 H 0.09 1.56 7.58 -2.38 -0.02 1.54 16 10 N -0.68 -12.70 4.47 -443.30 -1.98 -14.68 16 11 C 0.52 13.02 7.77 87.27 0.68 13.70 16 12 O -0.52 -14.46 12.70 -3.27 -0.04 -14.50 16 13 C 0.50 14.77 7.77 87.27 0.68 15.44 16 14 O -0.55 -17.38 15.95 -3.25 -0.05 -17.43 16 15 N -0.57 -17.90 3.00 -818.62 -2.46 -20.36 16 16 C 0.12 3.72 6.62 86.50 0.57 4.29 16 17 C 0.05 2.07 5.18 86.54 0.45 2.52 16 18 N -0.54 -22.90 4.83 -898.90 -4.34 -27.24 16 19 C 0.20 10.47 5.11 85.55 0.44 10.90 16 20 C -0.56 -31.04 7.76 25.60 0.20 -30.84 16 21 H 0.05 2.80 5.88 -2.91 -0.02 2.79 16 22 C 0.02 0.86 5.46 84.66 0.46 1.33 16 23 N -0.92 -54.54 13.29 21.45 0.28 -54.26 16 24 Si 0.95 43.95 29.54 68.60 2.03 45.98 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 27 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 28 C 0.05 2.14 5.24 86.38 0.45 2.59 16 29 C 0.07 2.24 6.35 86.35 0.55 2.79 16 30 H 0.05 0.74 7.68 -2.38 -0.02 0.72 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.42 7.02 8.07 -92.71 -0.75 6.28 16 40 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 41 H 0.10 2.89 7.07 -2.39 -0.02 2.87 16 42 H 0.02 0.80 6.64 -2.39 -0.02 0.78 16 43 H 0.08 3.07 8.11 -2.39 -0.02 3.05 16 44 H 0.01 0.64 8.07 -2.39 -0.02 0.62 16 45 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 46 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 47 H 0.01 0.66 7.09 -2.39 -0.02 0.64 16 48 H 0.08 2.98 8.06 -2.38 -0.02 2.96 16 49 H 0.16 4.72 3.92 -75.04 -0.29 4.43 16 50 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -65.98 389.49 -1.95 -67.93 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -0.09 Total: 19.19 kcal Atomic # 6 Polarization: 16.47 SS G_CDS: 6.30 Total: 22.77 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -8.49 Total: -116.54 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -1.70 Total: -39.32 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -65.98 -1.95 -67.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261961406.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.530 kcal (2) G-P(sol) polarization free energy of solvation -65.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds