Wall clock time and date at job start Tue Mar 31 2020 22:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.43277 * 2 1 4 4 C 1.47684 * 109.43937 * 119.91232 * 2 1 3 5 5 O 1.42559 * 113.66655 * 180.86623 * 4 2 1 6 6 C 1.40517 * 113.54953 * 272.24591 * 5 4 2 7 7 C 1.54298 * 109.87088 * 95.28387 * 6 5 4 8 8 N 1.48185 * 110.69060 * 320.61796 * 7 6 5 9 9 C 1.34777 * 118.50873 * 138.49243 * 8 7 6 10 10 O 1.21347 * 120.00250 * 358.76496 * 9 8 7 11 11 C 1.49450 * 119.99823 * 178.77092 * 9 8 7 12 12 O 1.21356 * 120.00308 * 6.22657 * 11 9 8 13 13 N 1.34774 * 120.00184 * 186.22671 * 11 9 8 14 14 C 1.46505 * 120.00469 * 180.02562 * 13 11 9 15 15 C 1.53042 * 109.45681 * 275.06882 * 14 13 11 16 16 C 1.53194 * 109.30941 * 178.61148 * 15 14 13 17 17 N 1.46918 * 108.77530 * 54.63558 * 16 15 14 18 18 C 1.36939 * 120.63205 * 126.41280 * 17 16 15 19 19 H 1.07997 * 120.00088 * 215.26053 * 18 17 16 20 20 C 1.38815 * 119.99876 * 35.26050 * 18 17 16 21 21 N 1.31617 * 119.99876 * 355.59594 * 20 18 17 22 22 Si 1.86800 * 120.00020 * 175.60689 * 20 18 17 23 23 H 1.48504 * 109.46980 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47176 * 119.99148 * 22 20 18 25 25 H 1.48499 * 109.47003 * 239.99625 * 22 20 18 26 26 C 1.46931 * 118.73989 * 306.38567 * 17 16 15 27 27 C 1.53034 * 109.46270 * 154.99816 * 14 13 11 28 28 C 1.44457 * 122.97796 * 318.77058 * 8 7 6 29 29 H 1.09005 * 109.47032 * 300.08430 * 1 2 3 30 30 H 1.08996 * 109.47688 * 60.08469 * 1 2 3 31 31 H 1.09006 * 109.47129 * 180.08976 * 1 2 3 32 32 H 1.09001 * 108.64671 * 59.78934 * 4 2 1 33 33 H 1.09005 * 108.54124 * 301.87334 * 4 2 1 34 34 H 1.09004 * 109.40404 * 335.16272 * 6 5 4 35 35 H 1.09002 * 109.40999 * 215.40514 * 6 5 4 36 36 H 1.08996 * 109.23537 * 200.30777 * 7 6 5 37 37 H 1.09000 * 109.23582 * 80.92959 * 7 6 5 38 38 H 0.97000 * 120.00293 * 359.97438 * 13 11 9 39 39 H 1.09002 * 109.45605 * 35.02079 * 14 13 11 40 40 H 1.09001 * 109.49800 * 298.56140 * 15 14 13 41 41 H 1.09001 * 109.49883 * 58.65802 * 15 14 13 42 42 H 1.08997 * 109.58716 * 294.84269 * 16 15 14 43 43 H 1.09000 * 109.58307 * 174.41897 * 16 15 14 44 44 H 0.97001 * 120.00119 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.58384 * 293.82804 * 26 17 16 46 46 H 1.08994 * 109.70230 * 173.47039 * 26 17 16 47 47 H 1.09001 * 109.49979 * 301.33332 * 27 14 13 48 48 H 1.08998 * 109.49698 * 61.40272 * 27 14 13 49 49 H 1.08997 * 109.49838 * 208.89030 * 28 8 7 50 50 H 1.08998 * 109.49454 * 328.98121 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8926 1.0279 0.0000 4 6 2.0215 -0.6945 1.2071 5 8 3.4431 -0.7298 1.3081 6 6 4.0250 -1.8307 0.6570 7 6 4.4690 -1.4250 -0.7640 8 7 3.4705 -0.5249 -1.3875 9 6 3.9121 0.5339 -2.0950 10 8 5.1031 0.7452 -2.1913 11 6 2.9348 1.4477 -2.7609 12 8 1.7445 1.3043 -2.5728 13 7 3.3753 2.4311 -3.5704 14 6 2.4174 3.3272 -4.2228 15 6 1.9173 2.6832 -5.5179 16 6 0.8901 3.6074 -6.1794 17 7 1.4947 4.9343 -6.3596 18 6 1.5052 5.5350 -7.5902 19 1 2.3466 6.1436 -7.8869 20 6 0.4342 5.3617 -8.4562 21 7 -0.5506 4.5514 -8.1310 22 14 0.3911 6.2783 -10.0833 23 1 1.6079 7.1201 -10.2097 24 1 0.3464 5.3013 -11.2008 25 1 -0.8155 7.1425 -10.1327 26 6 2.0875 5.6047 -5.1943 27 6 3.1012 4.6581 -4.5438 28 6 2.0453 -0.7274 -1.2665 29 1 -0.3633 0.5152 0.8893 30 1 -0.3634 0.5125 -0.8907 31 1 -0.3634 -1.0277 0.0016 32 1 1.6474 -1.7182 1.1968 33 1 1.6222 -0.1873 2.0855 34 1 3.2969 -2.6393 0.5918 35 1 4.8917 -2.1703 1.2240 36 1 4.5766 -2.3205 -1.3759 37 1 5.4290 -0.9120 -0.7075 38 1 4.3267 2.5460 -3.7206 39 1 1.5734 3.5041 -3.5560 40 1 2.7571 2.5287 -6.1953 41 1 1.4511 1.7244 -5.2911 42 1 0.0096 3.6905 -5.5424 43 1 0.6046 3.2012 -7.1498 44 1 -1.2992 4.4306 -8.7360 45 1 1.3046 5.8506 -4.4769 46 1 2.5915 6.5173 -5.5123 47 1 3.4777 5.1050 -3.6236 48 1 3.9303 4.4849 -5.2299 49 1 1.5445 -0.3242 -2.1466 50 1 1.8352 -1.7938 -1.1844 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262220786.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:01 Heat of formation + Delta-G solvation = -73.776065 kcal Electronic energy + Delta-G solvation = -31221.648675 eV Core-core repulsion = 27057.372814 eV Total energy + Delta-G solvation = -4164.275861 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.20747 -39.55304 -38.46709 -37.39888 -35.96004 -34.61451 -34.30254 -32.16130 -30.19321 -30.01047 -29.51489 -26.70823 -26.60369 -25.63238 -24.33253 -22.41341 -22.20441 -21.34962 -20.90674 -20.09481 -19.17529 -17.85822 -17.51033 -16.87382 -16.68310 -16.39112 -15.93306 -15.59680 -15.32061 -14.93671 -14.58298 -14.42911 -14.03933 -13.91951 -13.72366 -13.50342 -13.35378 -13.08756 -12.97611 -12.63919 -12.44202 -12.34439 -12.21859 -11.88941 -11.85218 -11.54454 -11.30656 -11.08360 -10.97468 -10.92221 -10.83650 -10.81832 -10.38249 -10.21234 -10.09055 -9.91951 -9.86560 -9.71850 -9.18647 -8.92467 -8.74027 -8.45082 -6.59671 -5.80561 -3.34245 1.45949 2.28980 3.22350 3.35294 3.40833 3.43239 3.44839 3.58149 4.34741 4.45803 4.45989 4.49763 4.69798 4.72005 4.93921 5.01425 5.09589 5.20424 5.24022 5.25370 5.37964 5.41561 5.44246 5.50612 5.52110 5.59760 5.71028 5.78018 5.81590 5.99075 6.06257 6.09245 6.22346 6.26590 6.33422 6.41438 6.55911 6.64907 6.74367 6.79298 6.90357 6.91943 6.93686 7.36541 7.42922 7.75519 7.76909 7.80150 8.10611 8.50941 9.22190 9.80601 10.39871 11.25254 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023746 B = 0.002475 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.884622 B =11308.806243 C =11792.600644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 H 0.080 0.920 4 C 0.063 3.937 5 O -0.367 6.367 6 C 0.051 3.949 7 C 0.078 3.922 8 N -0.574 5.574 9 C 0.504 3.496 10 O -0.526 6.526 11 C 0.503 3.497 12 O -0.511 6.511 13 N -0.689 5.689 14 C 0.148 3.852 15 C -0.148 4.148 16 C 0.170 3.830 17 N -0.595 5.595 18 C -0.255 4.255 19 H 0.065 0.935 20 C 0.009 3.991 21 N -0.903 5.903 22 Si 0.903 3.097 23 H -0.277 1.277 24 H -0.290 1.290 25 H -0.288 1.288 26 C 0.150 3.850 27 C -0.141 4.141 28 C 0.081 3.919 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.406 0.594 39 H 0.086 0.914 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.018 0.982 43 H 0.104 0.896 44 H 0.254 0.746 45 H 0.021 0.979 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.065 0.935 49 H 0.140 0.860 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.229 -13.841 17.845 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.150 4.150 3 H 0.099 0.901 4 C -0.013 4.013 5 O -0.285 6.285 6 C -0.027 4.027 7 C -0.044 4.044 8 N -0.307 5.307 9 C 0.287 3.713 10 O -0.402 6.402 11 C 0.284 3.716 12 O -0.389 6.389 13 N -0.339 5.339 14 C 0.046 3.954 15 C -0.189 4.189 16 C 0.044 3.956 17 N -0.318 5.318 18 C -0.384 4.384 19 H 0.083 0.917 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.733 3.267 23 H -0.202 1.202 24 H -0.217 1.217 25 H -0.215 1.215 26 C 0.022 3.978 27 C -0.181 4.181 28 C -0.041 4.041 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.117 0.883 38 H 0.242 0.758 39 H 0.104 0.896 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.036 0.964 43 H 0.122 0.878 44 H 0.065 0.935 45 H 0.039 0.961 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.157 0.843 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.957 -13.729 17.918 23.345 hybrid contribution 0.262 0.156 -0.947 0.995 sum 6.219 -13.573 16.970 22.603 Atomic orbital electron populations 1.21627 0.93098 1.01806 1.03076 1.21399 0.97116 1.01547 0.94976 0.90130 1.21747 0.80732 1.00235 0.98623 1.87502 1.20234 1.47010 1.73738 1.22876 0.99063 0.88876 0.91919 1.22814 0.93511 0.94106 0.94009 1.47579 1.07693 1.25833 1.49633 1.20449 0.88749 0.82053 0.80076 1.90722 1.16592 1.72226 1.60640 1.19968 0.88555 0.82549 0.80533 1.90565 1.16500 1.69337 1.62496 1.46247 1.11961 1.30634 1.45085 1.21258 0.91066 0.88633 0.94462 1.22645 1.01311 0.99640 0.95254 1.20978 0.90392 0.83591 1.00685 1.44062 1.68123 1.15513 1.04057 1.19198 1.00263 1.27088 0.91890 0.91738 1.25333 0.95324 0.98753 0.99582 1.69890 1.10338 1.37580 1.36918 0.86204 0.77583 0.79647 0.83269 1.20222 1.21671 1.21478 1.20858 0.93363 0.93681 0.89873 1.22371 1.00225 0.95304 1.00174 1.22664 0.79149 1.00097 1.02232 0.92505 0.90780 0.92814 0.93195 0.89762 0.92477 0.88501 0.90621 0.88327 0.75815 0.89579 0.92602 0.92895 0.96383 0.87782 0.93501 0.96105 0.92212 0.92460 0.91676 0.84328 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.15 37.16 0.34 -0.87 16 2 C -0.13 -1.31 2.35 -92.20 -0.22 -1.53 16 3 H 0.08 1.03 7.89 -51.93 -0.41 0.62 16 4 C 0.06 0.55 5.26 34.59 0.18 0.73 16 5 O -0.37 -3.82 10.23 -34.08 -0.35 -4.17 16 6 C 0.05 0.38 6.49 37.84 0.25 0.63 16 7 C 0.08 0.72 6.57 -2.44 -0.02 0.70 16 8 N -0.57 -6.72 2.55 -172.44 -0.44 -7.16 16 9 C 0.50 7.16 7.69 -11.58 -0.09 7.07 16 10 O -0.53 -8.35 15.78 5.50 0.09 -8.26 16 11 C 0.50 7.56 7.70 -11.59 -0.09 7.47 16 12 O -0.51 -8.12 11.96 5.49 0.07 -8.05 16 13 N -0.69 -10.30 5.07 -54.19 -0.27 -10.57 16 14 C 0.15 2.53 2.41 -67.89 -0.16 2.36 16 15 C -0.15 -2.88 5.65 -26.61 -0.15 -3.03 16 16 C 0.17 4.03 5.27 -3.71 -0.02 4.01 16 17 N -0.59 -14.59 3.00 -172.32 -0.52 -15.11 16 18 C -0.25 -6.85 9.56 -15.06 -0.14 -6.99 16 19 H 0.06 1.71 7.83 -52.49 -0.41 1.29 16 20 C 0.01 0.24 5.32 -17.43 -0.09 0.15 16 21 N -0.90 -25.69 10.60 55.49 0.59 -25.10 16 22 Si 0.90 21.35 29.56 -169.99 -5.02 16.33 16 23 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.15 3.02 6.51 -3.71 -0.02 3.00 16 27 C -0.14 -2.35 5.55 -26.61 -0.15 -2.49 16 28 C 0.08 0.85 4.32 -4.14 -0.02 0.84 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.34 7.28 -51.93 -0.38 -0.03 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.33 7.21 -51.93 -0.37 -0.04 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 1.04 6.99 -51.93 -0.36 0.68 16 38 H 0.41 5.61 8.09 -40.82 -0.33 5.28 16 39 H 0.09 1.58 7.58 -51.93 -0.39 1.19 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.10 2.79 5.90 -51.93 -0.31 2.49 16 44 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.06 1.17 7.94 -51.93 -0.41 0.76 16 47 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.14 1.74 4.75 -54.15 -0.26 1.49 16 50 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 LS Contribution 385.42 15.07 5.81 5.81 Total: -1.00 -30.73 385.42 -8.72 -39.45 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -8.26 Total: 4.78 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: -0.40 Total: 12.04 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -0.64 Total: -57.94 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.20 Total: -20.48 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.73 -8.72 -39.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262220786.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.322 kcal (2) G-P(sol) polarization free energy of solvation -30.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds