Wall clock time and date at job start Tue Mar 31 2020 22:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.43633 * 2 1 4 4 C 1.47682 * 109.43320 * 240.08411 * 2 1 3 5 5 O 1.42562 * 113.66109 * 179.17330 * 4 2 1 6 6 C 1.40529 * 113.54690 * 87.75938 * 5 4 2 7 7 C 1.54301 * 109.86755 * 264.71723 * 6 5 4 8 8 N 1.48176 * 110.69615 * 39.37853 * 7 6 5 9 9 C 1.34778 * 118.51619 * 221.23055 * 8 7 6 10 10 O 1.21349 * 119.99338 * 1.22918 * 9 8 7 11 11 C 1.49447 * 120.00329 * 180.96095 * 9 8 7 12 12 O 1.21345 * 119.99841 * 354.05942 * 11 9 8 13 13 N 1.34772 * 119.99803 * 174.06036 * 11 9 8 14 14 C 1.46504 * 119.99581 * 179.97438 * 13 11 9 15 15 C 1.53035 * 109.46294 * 275.06896 * 14 13 11 16 16 C 1.53191 * 109.31297 * 178.61654 * 15 14 13 17 17 N 1.46923 * 108.77811 * 54.63386 * 16 15 14 18 18 C 1.36935 * 120.63110 * 126.41320 * 17 16 15 19 19 H 1.08005 * 120.00248 * 215.25814 * 18 17 16 20 20 C 1.38811 * 119.99984 * 35.25732 * 18 17 16 21 21 N 1.31615 * 120.00097 * 355.59431 * 20 18 17 22 22 Si 1.86806 * 119.99954 * 175.59402 * 20 18 17 23 23 H 1.48496 * 109.47166 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47137 * 120.00267 * 22 20 18 25 25 H 1.48498 * 109.46898 * 240.00064 * 22 20 18 26 26 C 1.46928 * 118.74026 * 306.39594 * 17 16 15 27 27 C 1.53042 * 109.45780 * 155.00191 * 14 13 11 28 28 C 1.44466 * 122.97264 * 41.50297 * 8 7 6 29 29 H 1.08997 * 109.47450 * 179.91840 * 1 2 3 30 30 H 1.09002 * 109.47027 * 299.91499 * 1 2 3 31 31 H 1.09001 * 109.47410 * 59.91528 * 1 2 3 32 32 H 1.09000 * 108.64682 * 58.09422 * 4 2 1 33 33 H 1.08996 * 108.64932 * 300.25178 * 4 2 1 34 34 H 1.08996 * 109.40790 * 144.58927 * 6 5 4 35 35 H 1.09004 * 109.33395 * 24.79281 * 6 5 4 36 36 H 1.08998 * 109.22676 * 279.06657 * 7 6 5 37 37 H 1.09003 * 109.23201 * 159.69361 * 7 6 5 38 38 H 0.96996 * 120.00451 * 359.97438 * 13 11 9 39 39 H 1.08997 * 109.46168 * 35.03308 * 14 13 11 40 40 H 1.08997 * 109.49970 * 298.56615 * 15 14 13 41 41 H 1.08999 * 109.50061 * 58.66555 * 15 14 13 42 42 H 1.09004 * 109.58708 * 294.84381 * 16 15 14 43 43 H 1.08998 * 109.58762 * 174.42342 * 16 15 14 44 44 H 0.97003 * 120.00037 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.58375 * 293.81538 * 26 17 16 46 46 H 1.09005 * 109.58727 * 173.39276 * 26 17 16 47 47 H 1.09003 * 109.49760 * 301.33617 * 27 14 13 48 48 H 1.09000 * 109.49945 * 61.43296 * 27 14 13 49 49 H 1.08999 * 109.49502 * 30.74795 * 28 8 7 50 50 H 1.09007 * 109.48934 * 150.83121 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8927 1.0278 0.0000 4 6 2.0214 -0.6946 -1.2071 5 8 3.4430 -0.7307 -1.3077 6 6 4.0240 -1.8322 -0.6566 7 6 4.4677 -1.4270 0.7647 8 7 3.4698 -0.5264 1.3880 9 6 3.9117 0.5287 2.1007 10 8 5.1031 0.7363 2.2017 11 6 2.9346 1.4462 2.7617 12 8 1.7448 1.3059 2.5691 13 7 3.3749 2.4293 3.5715 14 6 2.4170 3.3290 4.2190 15 6 2.0649 4.4717 3.2638 16 6 1.0371 5.3912 3.9309 17 7 1.5680 5.8311 5.2284 18 6 1.6387 7.1632 5.5378 19 1 2.4605 7.5370 6.1306 20 6 0.6543 8.0331 5.0895 21 7 -0.2995 7.5947 4.2956 22 14 0.6832 9.8261 5.6131 23 1 1.8495 10.0637 6.5010 24 1 0.7911 10.6912 4.4110 25 1 -0.5686 10.1484 6.3441 26 6 2.0211 4.8147 6.1877 27 6 3.0378 3.9017 5.4952 28 6 2.0445 -0.7314 1.2713 29 1 -0.3634 -1.0276 -0.0015 30 1 -0.3633 0.5125 0.8908 31 1 -0.3634 0.5151 -0.8892 32 1 1.6226 -0.1891 -2.0867 33 1 1.6467 -1.7181 -1.1971 34 1 4.8907 -2.1722 -1.2234 35 1 3.2943 -2.6393 -0.5918 36 1 5.4281 -0.9147 0.7085 37 1 4.5747 -2.3228 1.3764 38 1 4.3260 2.5412 3.7258 39 1 1.5127 2.7756 4.4718 40 1 2.9646 5.0409 3.0301 41 1 1.6443 4.0618 2.3456 42 1 0.1047 4.8474 4.0830 43 1 0.8571 6.2590 3.2965 44 1 -0.9873 8.2027 3.9820 45 1 1.1689 4.2240 6.5239 46 1 2.4903 5.3023 7.0423 47 1 3.3097 3.0861 6.1652 48 1 3.9284 4.4762 5.2405 49 1 1.8360 -1.7980 1.1880 50 1 1.5459 -0.3306 2.1539 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262220787.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:02 Heat of formation + Delta-G solvation = -94.679121 kcal Electronic energy + Delta-G solvation = -31294.510544 eV Core-core repulsion = 27129.328258 eV Total energy + Delta-G solvation = -4165.182286 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.24864 -40.55075 -39.57747 -38.87847 -36.97170 -35.87883 -35.29398 -33.92041 -31.80500 -31.28774 -30.80107 -27.63983 -27.45195 -27.03291 -25.66780 -23.91352 -23.67398 -22.40405 -21.85258 -21.37118 -20.62603 -19.04696 -18.64814 -18.33421 -17.63191 -17.44600 -16.97125 -16.85116 -16.57598 -16.18831 -15.82943 -15.50671 -15.37286 -15.29221 -14.88741 -14.80934 -14.68716 -14.46161 -14.11272 -14.06448 -13.73556 -13.32334 -13.22572 -12.99240 -12.82637 -12.77630 -12.67290 -12.60544 -12.51734 -12.22677 -12.10927 -11.98946 -11.88345 -11.76283 -11.60625 -11.55334 -11.39663 -10.65227 -10.57482 -10.35803 -10.12757 -9.75072 -8.58527 -7.86107 -5.43076 0.31102 1.24147 1.47156 1.48736 1.58927 2.07727 2.38963 2.50072 2.92556 3.24380 3.31008 3.69009 3.70785 3.79994 3.83331 3.95032 4.03996 4.13238 4.21908 4.29270 4.35312 4.39704 4.46922 4.57641 4.63146 4.66518 4.67202 4.72693 4.81225 4.82243 4.84761 4.95318 5.01456 5.04211 5.07936 5.12045 5.21303 5.32282 5.32741 5.42916 5.47981 5.53409 5.65043 5.79633 5.86615 6.22304 6.33382 6.46283 6.67145 6.92779 7.17464 7.84288 8.38529 9.17832 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020255 B = 0.002609 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.036838 B =10728.836229 C =11460.485270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.126 4.126 3 H 0.041 0.959 4 C 0.062 3.938 5 O -0.394 6.394 6 C 0.049 3.951 7 C 0.072 3.928 8 N -0.567 5.567 9 C 0.501 3.499 10 O -0.548 6.548 11 C 0.501 3.499 12 O -0.522 6.522 13 N -0.684 5.684 14 C 0.162 3.838 15 C -0.133 4.133 16 C 0.180 3.820 17 N -0.613 5.613 18 C -0.264 4.264 19 H 0.069 0.931 20 C -0.047 4.047 21 N -0.934 5.934 22 Si 0.969 3.031 23 H -0.264 1.264 24 H -0.292 1.292 25 H -0.291 1.291 26 C 0.145 3.855 27 C -0.126 4.126 28 C 0.081 3.919 29 H 0.078 0.922 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.116 0.884 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.415 0.585 39 H 0.076 0.924 40 H 0.051 0.949 41 H 0.049 0.951 42 H -0.005 1.005 43 H 0.068 0.932 44 H 0.250 0.750 45 H 0.020 0.980 46 H 0.067 0.933 47 H 0.092 0.908 48 H 0.068 0.932 49 H 0.099 0.901 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.686 -23.826 -8.305 26.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.146 4.146 3 H 0.060 0.940 4 C -0.014 4.014 5 O -0.312 6.312 6 C -0.029 4.029 7 C -0.049 4.049 8 N -0.298 5.298 9 C 0.283 3.717 10 O -0.427 6.427 11 C 0.282 3.718 12 O -0.399 6.399 13 N -0.335 5.335 14 C 0.059 3.941 15 C -0.173 4.173 16 C 0.053 3.947 17 N -0.337 5.337 18 C -0.394 4.394 19 H 0.087 0.913 20 C -0.242 4.242 21 N -0.580 5.580 22 Si 0.797 3.203 23 H -0.188 1.188 24 H -0.219 1.219 25 H -0.218 1.218 26 C 0.019 3.981 27 C -0.166 4.166 28 C -0.041 4.041 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.134 0.866 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.121 0.879 38 H 0.252 0.748 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.013 0.987 43 H 0.086 0.914 44 H 0.060 0.940 45 H 0.038 0.962 46 H 0.085 0.915 47 H 0.110 0.890 48 H 0.086 0.914 49 H 0.117 0.883 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.446 -23.627 -8.552 25.941 hybrid contribution -0.053 1.331 0.276 1.360 sum 6.393 -22.296 -8.276 24.627 Atomic orbital electron populations 1.21574 0.92240 1.03056 1.02209 1.21429 0.97815 0.99559 0.95816 0.93996 1.21781 0.80291 1.01643 0.97717 1.87497 1.21095 1.48467 1.74143 1.23093 1.00459 0.88643 0.90661 1.23085 0.92067 0.94111 0.95610 1.47747 1.08743 1.25214 1.48135 1.20246 0.88112 0.82602 0.80698 1.90712 1.17075 1.72945 1.61951 1.20261 0.88687 0.82425 0.80421 1.90597 1.17142 1.70536 1.61674 1.46012 1.11977 1.29962 1.45584 1.20892 0.91790 0.88936 0.92524 1.22370 1.00174 0.96774 0.98006 1.20635 0.91135 0.95614 0.87277 1.44299 1.74357 1.01984 1.13053 1.19531 1.04206 0.84743 1.30916 0.91318 1.26085 0.95507 1.02978 0.99627 1.70089 1.15970 1.35538 1.36395 0.85181 0.77556 0.79976 0.77601 1.18843 1.21946 1.21765 1.21031 0.94778 0.90108 0.92210 1.22197 0.99331 0.99644 0.95410 1.22783 0.78191 1.01813 1.01304 0.90271 0.93111 0.92090 0.89601 0.90275 0.86574 0.89819 0.90097 0.87927 0.74850 0.90539 0.93005 0.93276 0.98737 0.91377 0.94045 0.96170 0.91456 0.88952 0.91351 0.88257 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 9.15 71.98 0.66 -1.65 16 2 C -0.13 -2.52 2.36 -11.62 -0.03 -2.55 16 3 H 0.04 1.17 7.88 -2.39 -0.02 1.15 16 4 C 0.06 0.99 5.26 70.32 0.37 1.36 16 5 O -0.39 -7.70 10.23 -144.94 -1.48 -9.18 16 6 C 0.05 0.59 6.50 72.42 0.47 1.06 16 7 C 0.07 1.16 6.56 86.50 0.57 1.72 16 8 N -0.57 -12.34 2.54 -816.68 -2.07 -14.41 16 9 C 0.50 13.95 7.69 87.27 0.67 14.62 16 10 O -0.55 -17.20 15.78 -3.24 -0.05 -17.25 16 11 C 0.50 14.96 7.69 87.27 0.67 15.63 16 12 O -0.52 -16.75 11.95 -3.23 -0.04 -16.79 16 13 N -0.68 -20.00 5.07 -443.75 -2.25 -22.25 16 14 C 0.16 5.46 2.41 45.02 0.11 5.57 16 15 C -0.13 -5.38 5.65 30.67 0.17 -5.21 16 16 C 0.18 8.97 5.27 86.36 0.45 9.42 16 17 N -0.61 -30.65 3.00 -699.09 -2.10 -32.75 16 18 C -0.26 -14.38 9.55 84.03 0.80 -13.58 16 19 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 20 C -0.05 -2.60 5.32 84.86 0.45 -2.15 16 21 N -0.93 -55.29 10.60 21.65 0.23 -55.06 16 22 Si 0.97 44.72 29.56 68.60 2.03 46.75 16 23 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 25 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 26 C 0.14 5.73 6.52 86.36 0.56 6.29 16 27 C -0.13 -3.97 5.55 30.67 0.17 -3.80 16 28 C 0.08 1.55 4.35 87.59 0.38 1.93 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 0.80 7.27 -2.39 -0.02 0.78 16 34 H 0.12 0.96 8.14 -2.39 -0.02 0.95 16 35 H 0.08 0.58 7.20 -2.38 -0.02 0.56 16 36 H 0.08 1.62 6.99 -2.39 -0.02 1.60 16 37 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.41 10.96 8.09 -92.71 -0.75 10.21 16 39 H 0.08 2.77 7.58 -2.39 -0.02 2.75 16 40 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 42 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 43 H 0.07 3.89 5.90 -2.39 -0.01 3.88 16 44 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 45 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.07 2.54 7.93 -2.38 -0.02 2.52 16 47 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 48 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.10 1.25 8.10 -2.39 -0.02 1.23 16 50 H 0.12 2.80 4.78 -35.36 -0.17 2.63 16 Total: -1.00 -69.57 385.45 0.79 -68.79 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.03 Total: 23.46 kcal Atomic # 6 Polarization: 22.20 SS G_CDS: 6.49 Total: 28.69 kcal Atomic # 7 Polarization: -118.27 SS G_CDS: -6.19 Total: -124.46 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -1.57 Total: -43.21 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -69.57 0.79 -68.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262220787.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.891 kcal (2) G-P(sol) polarization free energy of solvation -69.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds