Wall clock time and date at job start Tue Mar 31 2020 22:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.43829 * 2 1 4 4 C 1.54103 * 110.49067 * 122.68903 * 2 1 3 5 5 O 1.43744 * 107.29619 * 116.64794 * 4 2 1 6 6 C 1.44378 * 106.97446 * 26.51027 * 5 4 2 7 7 H 1.09002 * 110.74884 * 78.51023 * 6 5 4 8 8 C 1.50699 * 110.61996 * 201.43808 * 6 5 4 9 9 O 1.21281 * 119.99785 * 359.07711 * 8 6 5 10 10 N 1.34772 * 120.00326 * 179.07033 * 8 6 5 11 11 C 1.46494 * 120.00463 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.47391 * 180.02562 * 11 10 8 13 13 H 1.08993 * 112.90825 * 316.25137 * 12 11 10 14 14 C 1.53962 * 113.66529 * 87.55384 * 12 11 10 15 15 C 1.53782 * 87.11063 * 139.88900 * 14 12 11 16 16 H 1.09004 * 113.68975 * 220.07786 * 15 14 12 17 17 N 1.46900 * 113.61224 * 89.19051 * 15 14 12 18 18 C 1.46894 * 111.00288 * 107.50487 * 17 15 14 19 19 C 1.50702 * 109.47034 * 179.97438 * 18 17 15 20 20 O 1.21286 * 120.00020 * 359.97438 * 19 18 17 21 21 N 1.34777 * 119.99608 * 179.97438 * 19 18 17 22 22 C 1.37104 * 119.99467 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00358 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99587 * 179.97438 * 22 21 19 25 25 N 1.31409 * 120.00200 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00069 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46979 * 89.99934 * 26 24 22 28 28 H 1.48497 * 109.47716 * 210.00257 * 26 24 22 29 29 H 1.48507 * 109.47004 * 330.00690 * 26 24 22 30 30 C 1.53781 * 87.08260 * 334.63747 * 15 14 12 31 31 C 1.54813 * 110.48829 * 237.45493 * 2 1 3 32 32 H 1.09004 * 109.46750 * 182.54887 * 1 2 3 33 33 H 1.09003 * 109.46847 * 302.54399 * 1 2 3 34 34 H 1.08992 * 109.47285 * 62.54262 * 1 2 3 35 35 H 1.08999 * 109.87887 * 236.07159 * 4 2 1 36 36 H 1.09002 * 109.87638 * 357.22242 * 4 2 1 37 37 H 0.97000 * 119.99857 * 0.02562 * 10 8 6 38 38 H 1.09002 * 109.47287 * 60.00002 * 11 10 8 39 39 H 1.09004 * 109.47020 * 300.00283 * 11 10 8 40 40 H 1.08997 * 113.53543 * 25.33574 * 14 12 11 41 41 H 1.08998 * 113.73879 * 254.47172 * 14 12 11 42 42 H 1.00899 * 111.00064 * 343.53992 * 17 15 14 43 43 H 1.09001 * 109.46333 * 299.99454 * 18 17 15 44 44 H 1.08995 * 109.47255 * 59.99450 * 18 17 15 45 45 H 0.97003 * 120.00287 * 359.97438 * 21 19 18 46 46 H 0.97000 * 120.00208 * 179.97438 * 25 24 22 47 47 H 1.09002 * 113.61445 * 139.98212 * 30 15 14 48 48 H 1.09002 * 113.61408 * 270.79943 * 30 15 14 49 49 H 1.08998 * 110.90515 * 102.24552 * 31 2 1 50 50 H 1.08996 * 110.90405 * 338.64208 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0694 -0.7796 1.2149 5 8 2.7956 -1.9118 0.7080 6 6 3.2660 -1.5553 -0.6097 7 1 4.1464 -0.9159 -0.5455 8 6 3.5674 -2.7910 -1.4179 9 8 3.4181 -3.8892 -0.9253 10 7 4.0027 -2.6759 -2.6882 11 6 4.2952 -3.8771 -3.4741 12 6 4.7694 -3.4700 -4.8706 13 1 4.1706 -2.6699 -5.3055 14 6 6.2865 -3.2237 -4.9607 15 6 6.2413 -3.9293 -6.3263 16 1 7.0896 -4.5898 -6.5063 17 7 5.9776 -3.0204 -7.4498 18 6 7.1874 -2.8173 -8.2579 19 6 6.8785 -1.8821 -9.3985 20 8 5.7604 -1.4297 -9.5260 21 7 7.8447 -1.5485 -10.2769 22 6 7.5635 -0.6981 -11.3149 23 1 6.5680 -0.2952 -11.4285 24 6 8.5598 -0.3537 -12.2203 25 7 9.7713 -0.8435 -12.0818 26 14 8.1767 0.8044 -13.6349 27 1 8.4247 2.2052 -13.2089 28 1 9.0477 0.4773 -14.7923 29 1 6.7528 0.6514 -14.0281 30 6 4.9877 -4.6611 -5.8186 31 6 2.0719 -0.7802 -1.2225 32 1 -0.3633 -1.0267 0.0457 33 1 -0.3633 0.5529 0.8663 34 1 -0.3633 0.4738 -0.9118 35 1 2.7351 -0.1432 1.7979 36 1 1.2401 -1.1189 1.8355 37 1 4.1224 -1.7976 -3.0821 38 1 3.3940 -4.4843 -3.5587 39 1 5.0767 -4.4537 -2.9791 40 1 6.8607 -3.7645 -4.2085 41 1 6.5570 -2.1696 -5.0226 42 1 5.6086 -2.1398 -7.1236 43 1 7.9715 -2.3857 -7.6358 44 1 7.5243 -3.7750 -8.6547 45 1 8.7391 -1.9101 -10.1748 46 1 10.4667 -0.6034 -12.7140 47 1 4.2083 -4.7671 -6.5732 48 1 5.2068 -5.5957 -5.3022 49 1 2.4103 -0.0967 -2.0012 50 1 1.3197 -1.4673 -1.6099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263867294.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:24 Heat of formation + Delta-G solvation = -104.076405 kcal Electronic energy + Delta-G solvation = -28561.291052 eV Core-core repulsion = 24395.701269 eV Total energy + Delta-G solvation = -4165.589783 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.75396 -39.77213 -38.73918 -38.02791 -35.13118 -34.10032 -33.95491 -33.10478 -31.24644 -30.97679 -28.15845 -26.81655 -26.21574 -25.76122 -24.31755 -23.78381 -22.32478 -21.06910 -20.68636 -19.33696 -19.05789 -17.94770 -17.76319 -17.34317 -16.41615 -16.08039 -15.80553 -15.55161 -15.46947 -15.20308 -14.78266 -14.58980 -14.49114 -14.18500 -13.95109 -13.84486 -13.50049 -13.21540 -13.07786 -13.04212 -12.74337 -12.59944 -12.32791 -12.19741 -11.93804 -11.71600 -11.57828 -11.54848 -11.47960 -11.29255 -11.07834 -10.96130 -10.55798 -10.41662 -10.37217 -10.24899 -10.22376 -9.84879 -9.53726 -9.34695 -8.48684 -8.08512 -7.98562 -6.44309 -3.85276 2.28738 2.55641 3.15603 3.24597 3.30478 3.56680 3.87722 3.88616 4.01902 4.14802 4.24037 4.28488 4.41980 4.46139 4.53821 4.56690 4.61841 4.72228 4.87056 4.92201 5.06745 5.08632 5.14245 5.14765 5.22718 5.24315 5.35490 5.39295 5.43877 5.47351 5.51096 5.58947 5.65135 5.71058 5.71410 5.78668 5.88804 6.01447 6.07416 6.10328 6.21463 6.28847 6.33061 7.16308 7.22856 7.52614 7.62549 7.91016 8.03525 8.58299 9.15094 9.51447 10.02647 10.73329 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016347 B = 0.001652 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.483254 B =16946.775560 C =18117.276915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 H 0.088 0.912 4 C 0.047 3.953 5 O -0.348 6.348 6 C 0.058 3.942 7 H 0.097 0.903 8 C 0.517 3.483 9 O -0.522 6.522 10 N -0.724 5.724 11 C 0.132 3.868 12 C -0.123 4.123 13 H 0.099 0.901 14 C -0.166 4.166 15 C 0.067 3.933 16 H 0.084 0.916 17 N -0.648 5.648 18 C 0.051 3.949 19 C 0.440 3.560 20 O -0.585 6.585 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.283 1.283 29 H -0.269 1.269 30 C -0.121 4.121 31 C -0.141 4.141 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.402 0.598 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.350 0.650 43 H 0.044 0.956 44 H 0.087 0.913 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.081 0.919 48 H 0.084 0.916 49 H 0.090 0.910 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.720 -0.521 23.898 26.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 H 0.106 0.894 4 C -0.030 4.030 5 O -0.266 6.266 6 C -0.003 4.003 7 H 0.114 0.886 8 C 0.302 3.698 9 O -0.396 6.396 10 N -0.377 5.377 11 C 0.009 3.991 12 C -0.142 4.142 13 H 0.117 0.883 14 C -0.205 4.205 15 C -0.044 4.044 16 H 0.102 0.898 17 N -0.280 5.280 18 C -0.081 4.081 19 C 0.225 3.775 20 O -0.469 6.469 21 N -0.200 5.200 22 C -0.430 4.430 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 C -0.160 4.160 31 C -0.179 4.179 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.236 0.764 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.170 0.830 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.226 0.774 46 H 0.081 0.919 47 H 0.100 0.900 48 H 0.103 0.897 49 H 0.109 0.891 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.626 -1.693 23.739 26.487 hybrid contribution 1.111 1.642 -0.348 2.013 sum -10.515 -0.052 23.391 25.646 Atomic orbital electron populations 1.21837 0.93541 1.02505 1.02338 1.22549 0.97518 1.00146 0.94304 0.89370 1.23376 0.95952 0.87809 0.95908 1.89024 1.71936 1.36876 1.28714 1.22984 0.98514 0.93948 0.84852 0.88572 1.20166 0.77267 0.90415 0.81964 1.90738 1.50845 1.27757 1.70299 1.45927 1.68272 1.10579 1.12971 1.21442 1.00884 0.86745 0.90069 1.22841 0.96727 1.00528 0.94072 0.88284 1.23828 0.95830 1.01350 0.99516 1.22581 0.97752 0.95669 0.88389 0.89783 1.59923 1.29023 1.18303 1.20743 1.21715 0.91379 1.00128 0.94917 1.19817 0.86118 0.86050 0.85494 1.90518 1.22190 1.57967 1.76215 1.41868 1.11348 1.42240 1.24499 1.19705 0.98194 1.21984 1.03095 0.87917 1.25266 0.94856 0.98539 0.99270 1.69609 1.01906 1.44661 1.38066 0.85854 0.78540 0.79833 0.80038 1.20439 1.20901 1.19399 1.23028 0.99006 0.96197 0.97772 1.23229 0.97160 0.99213 0.98334 0.92072 0.92128 0.91998 0.91958 0.89264 0.76402 0.91255 0.91266 0.89687 0.91405 0.82967 0.93787 0.89499 0.77441 0.91853 0.90002 0.89742 0.89114 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 8.92 37.16 0.33 -0.35 16 2 C -0.13 -0.65 3.65 -89.09 -0.32 -0.98 16 3 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 4 C 0.05 0.31 7.37 37.73 0.28 0.59 16 5 O -0.35 -3.73 10.80 -54.30 -0.59 -4.31 16 6 C 0.06 0.48 3.76 -26.83 -0.10 0.38 16 7 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 8 C 0.52 5.56 7.21 -10.99 -0.08 5.48 16 9 O -0.52 -8.07 16.57 -13.51 -0.22 -8.29 16 10 N -0.72 -5.91 5.54 -60.30 -0.33 -6.25 16 11 C 0.13 1.17 5.51 -4.05 -0.02 1.15 16 12 C -0.12 -1.06 3.53 -89.71 -0.32 -1.38 16 13 H 0.10 0.89 8.09 -51.93 -0.42 0.47 16 14 C -0.17 -1.51 7.16 -25.82 -0.18 -1.69 16 15 C 0.07 0.76 4.28 -66.90 -0.29 0.47 16 16 H 0.08 0.91 7.87 -51.93 -0.41 0.51 16 17 N -0.65 -9.79 6.19 -107.13 -0.66 -10.46 16 18 C 0.05 0.87 6.01 -4.98 -0.03 0.84 16 19 C 0.44 10.15 7.82 -10.98 -0.09 10.06 16 20 O -0.58 -15.55 15.78 5.55 0.09 -15.46 16 21 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 22 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 23 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.24 13.05 55.50 0.72 -23.51 16 26 Si 0.93 20.80 29.55 -169.99 -5.02 15.77 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 29 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 30 C -0.12 -1.18 7.44 -25.92 -0.19 -1.37 16 31 C -0.14 -0.84 6.12 -24.72 -0.15 -0.99 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.09 0.54 7.69 -51.93 -0.40 0.14 16 37 H 0.40 2.30 8.47 -40.82 -0.35 1.95 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.66 7.84 -51.93 -0.41 0.26 16 40 H 0.08 0.71 7.90 -51.93 -0.41 0.30 16 41 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 42 H 0.35 5.39 7.83 -39.29 -0.31 5.09 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.09 1.37 8.13 -51.93 -0.42 0.95 16 45 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 46 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 47 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 49 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 50 H 0.09 0.60 7.78 -51.93 -0.40 0.19 16 LS Contribution 410.59 15.07 6.19 6.19 Total: -1.00 -34.54 410.59 -9.72 -44.26 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -8.42 Total: 11.88 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -1.41 Total: 4.27 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.33 Total: -54.31 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.72 Total: -28.06 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.54 -9.72 -44.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263867294.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.813 kcal (2) G-P(sol) polarization free energy of solvation -34.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds