Wall clock time and date at job start Tue Mar 31 2020 22:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.43829 * 2 1 4 4 C 1.54103 * 110.49067 * 122.68903 * 2 1 3 5 5 O 1.43744 * 107.29619 * 116.64794 * 4 2 1 6 6 C 1.44378 * 106.97446 * 26.51027 * 5 4 2 7 7 H 1.09002 * 110.74884 * 78.51023 * 6 5 4 8 8 C 1.50699 * 110.61996 * 201.43808 * 6 5 4 9 9 O 1.21281 * 119.99785 * 359.07711 * 8 6 5 10 10 N 1.34772 * 120.00326 * 179.07033 * 8 6 5 11 11 C 1.46494 * 120.00463 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.47391 * 180.02562 * 11 10 8 13 13 H 1.08993 * 112.90825 * 316.25137 * 12 11 10 14 14 C 1.53962 * 113.66529 * 87.55384 * 12 11 10 15 15 C 1.53782 * 87.11063 * 139.88900 * 14 12 11 16 16 H 1.09004 * 113.68975 * 220.07786 * 15 14 12 17 17 N 1.46900 * 113.61224 * 89.19051 * 15 14 12 18 18 C 1.46894 * 111.00288 * 107.50487 * 17 15 14 19 19 C 1.50702 * 109.47034 * 179.97438 * 18 17 15 20 20 O 1.21286 * 120.00020 * 359.97438 * 19 18 17 21 21 N 1.34777 * 119.99608 * 179.97438 * 19 18 17 22 22 C 1.37104 * 119.99467 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00358 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99587 * 179.97438 * 22 21 19 25 25 N 1.31409 * 120.00200 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00069 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46979 * 89.99934 * 26 24 22 28 28 H 1.48497 * 109.47716 * 210.00257 * 26 24 22 29 29 H 1.48507 * 109.47004 * 330.00690 * 26 24 22 30 30 C 1.53781 * 87.08260 * 334.63747 * 15 14 12 31 31 C 1.54813 * 110.48829 * 237.45493 * 2 1 3 32 32 H 1.09004 * 109.46750 * 182.54887 * 1 2 3 33 33 H 1.09003 * 109.46847 * 302.54399 * 1 2 3 34 34 H 1.08992 * 109.47285 * 62.54262 * 1 2 3 35 35 H 1.08999 * 109.87887 * 236.07159 * 4 2 1 36 36 H 1.09002 * 109.87638 * 357.22242 * 4 2 1 37 37 H 0.97000 * 119.99857 * 0.02562 * 10 8 6 38 38 H 1.09002 * 109.47287 * 60.00002 * 11 10 8 39 39 H 1.09004 * 109.47020 * 300.00283 * 11 10 8 40 40 H 1.08997 * 113.53543 * 25.33574 * 14 12 11 41 41 H 1.08998 * 113.73879 * 254.47172 * 14 12 11 42 42 H 1.00899 * 111.00064 * 343.53992 * 17 15 14 43 43 H 1.09001 * 109.46333 * 299.99454 * 18 17 15 44 44 H 1.08995 * 109.47255 * 59.99450 * 18 17 15 45 45 H 0.97003 * 120.00287 * 359.97438 * 21 19 18 46 46 H 0.97000 * 120.00208 * 179.97438 * 25 24 22 47 47 H 1.09002 * 113.61445 * 139.98212 * 30 15 14 48 48 H 1.09002 * 113.61408 * 270.79943 * 30 15 14 49 49 H 1.08998 * 110.90515 * 102.24552 * 31 2 1 50 50 H 1.08996 * 110.90405 * 338.64208 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0694 -0.7796 1.2149 5 8 2.7956 -1.9118 0.7080 6 6 3.2660 -1.5553 -0.6097 7 1 4.1464 -0.9159 -0.5455 8 6 3.5674 -2.7910 -1.4179 9 8 3.4181 -3.8892 -0.9253 10 7 4.0027 -2.6759 -2.6882 11 6 4.2952 -3.8771 -3.4741 12 6 4.7694 -3.4700 -4.8706 13 1 4.1706 -2.6699 -5.3055 14 6 6.2865 -3.2237 -4.9607 15 6 6.2413 -3.9293 -6.3263 16 1 7.0896 -4.5898 -6.5063 17 7 5.9776 -3.0204 -7.4498 18 6 7.1874 -2.8173 -8.2579 19 6 6.8785 -1.8821 -9.3985 20 8 5.7604 -1.4297 -9.5260 21 7 7.8447 -1.5485 -10.2769 22 6 7.5635 -0.6981 -11.3149 23 1 6.5680 -0.2952 -11.4285 24 6 8.5598 -0.3537 -12.2203 25 7 9.7713 -0.8435 -12.0818 26 14 8.1767 0.8044 -13.6349 27 1 8.4247 2.2052 -13.2089 28 1 9.0477 0.4773 -14.7923 29 1 6.7528 0.6514 -14.0281 30 6 4.9877 -4.6611 -5.8186 31 6 2.0719 -0.7802 -1.2225 32 1 -0.3633 -1.0267 0.0457 33 1 -0.3633 0.5529 0.8663 34 1 -0.3633 0.4738 -0.9118 35 1 2.7351 -0.1432 1.7979 36 1 1.2401 -1.1189 1.8355 37 1 4.1224 -1.7976 -3.0821 38 1 3.3940 -4.4843 -3.5587 39 1 5.0767 -4.4537 -2.9791 40 1 6.8607 -3.7645 -4.2085 41 1 6.5570 -2.1696 -5.0226 42 1 5.6086 -2.1398 -7.1236 43 1 7.9715 -2.3857 -7.6358 44 1 7.5243 -3.7750 -8.6547 45 1 8.7391 -1.9101 -10.1748 46 1 10.4667 -0.6034 -12.7140 47 1 4.2083 -4.7671 -6.5732 48 1 5.2068 -5.5957 -5.3022 49 1 2.4103 -0.0967 -2.0012 50 1 1.3197 -1.4673 -1.6099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263867294.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:23 Heat of formation + Delta-G solvation = -130.079877 kcal Electronic energy + Delta-G solvation = -28562.418647 eV Core-core repulsion = 24395.701269 eV Total energy + Delta-G solvation = -4166.717378 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.46670 -40.66904 -39.90974 -39.38331 -36.20863 -35.82476 -34.56428 -34.27738 -33.22141 -31.63316 -29.12544 -27.72682 -27.22837 -26.53035 -25.72628 -24.72082 -23.13396 -21.64071 -21.33903 -21.09781 -19.95049 -19.89853 -18.47811 -17.97850 -17.66773 -17.15284 -16.86466 -16.54394 -16.30856 -16.21921 -16.17630 -15.80755 -15.57640 -15.29752 -15.09048 -14.64982 -14.49931 -14.32563 -14.08676 -13.65010 -13.57780 -13.51894 -13.46896 -13.22033 -13.21365 -12.92157 -12.79081 -12.63475 -12.41077 -12.14823 -12.12148 -11.95376 -11.78143 -11.69724 -11.50016 -11.36636 -11.20159 -10.89069 -10.60738 -10.31662 -10.13749 -10.00698 -9.25423 -8.45951 -5.94657 1.38675 1.42812 1.48398 1.55374 1.87271 2.06270 2.29695 2.90620 3.00193 3.21512 3.37534 3.50321 3.60443 3.64000 3.75125 3.83202 3.83509 4.00940 4.07081 4.07861 4.22013 4.30625 4.36718 4.49271 4.55264 4.55828 4.66458 4.68007 4.71314 4.72495 4.80613 4.85890 4.88451 4.90320 4.95039 5.03687 5.14304 5.18340 5.25621 5.33214 5.33825 5.41884 5.47786 5.77780 5.94787 6.17933 6.46745 6.48381 6.60953 7.13394 7.15690 7.57345 8.12366 8.71299 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016347 B = 0.001652 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.483254 B =16946.775560 C =18117.276915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 H 0.110 0.890 4 C 0.039 3.961 5 O -0.387 6.387 6 C 0.057 3.943 7 H 0.122 0.878 8 C 0.513 3.487 9 O -0.578 6.578 10 N -0.709 5.709 11 C 0.136 3.864 12 C -0.110 4.110 13 H 0.098 0.902 14 C -0.153 4.153 15 C 0.059 3.941 16 H 0.092 0.908 17 N -0.663 5.663 18 C 0.067 3.933 19 C 0.437 3.563 20 O -0.623 6.623 21 N -0.573 5.573 22 C -0.334 4.334 23 H 0.079 0.921 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.993 3.007 27 H -0.270 1.270 28 H -0.272 1.272 29 H -0.274 1.274 30 C -0.119 4.119 31 C -0.137 4.137 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.416 0.584 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.068 0.932 42 H 0.346 0.654 43 H 0.068 0.932 44 H 0.102 0.898 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.066 0.934 48 H 0.101 0.899 49 H 0.117 0.883 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.136 0.646 24.275 26.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.139 4.139 3 H 0.128 0.872 4 C -0.037 4.037 5 O -0.306 6.306 6 C -0.004 4.004 7 H 0.140 0.860 8 C 0.300 3.700 9 O -0.457 6.457 10 N -0.362 5.362 11 C 0.013 3.987 12 C -0.128 4.128 13 H 0.116 0.884 14 C -0.192 4.192 15 C -0.051 4.051 16 H 0.110 0.890 17 N -0.295 5.295 18 C -0.066 4.066 19 C 0.225 3.775 20 O -0.510 6.510 21 N -0.210 5.210 22 C -0.464 4.464 23 H 0.097 0.903 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.816 3.184 27 H -0.196 1.196 28 H -0.197 1.197 29 H -0.198 1.198 30 C -0.157 4.157 31 C -0.175 4.175 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.253 0.747 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.087 0.913 42 H 0.166 0.834 43 H 0.086 0.914 44 H 0.120 0.880 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.119 0.881 49 H 0.135 0.865 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.018 -0.510 24.111 26.514 hybrid contribution 0.898 1.232 -0.428 1.584 sum -10.120 0.722 23.683 25.765 Atomic orbital electron populations 1.21836 0.93406 1.01819 1.03127 1.22568 0.97595 1.00779 0.92976 0.87206 1.23574 0.96116 0.87283 0.96706 1.88985 1.72683 1.39048 1.29913 1.23159 1.00317 0.92935 0.83954 0.86030 1.20732 0.76291 0.90571 0.82447 1.90707 1.53477 1.29921 1.71573 1.45822 1.66953 1.11204 1.12224 1.21344 1.00311 0.86907 0.90157 1.22705 0.96694 0.99962 0.93463 0.88429 1.23739 0.95893 1.01331 0.98226 1.22674 0.98759 0.95503 0.88181 0.88968 1.59912 1.28415 1.18648 1.22510 1.21560 0.92769 0.99086 0.93160 1.20909 0.85030 0.85594 0.85994 1.90486 1.23776 1.59412 1.77327 1.41941 1.11963 1.42447 1.24688 1.19671 0.97733 1.23867 1.05106 0.90283 1.26031 0.94534 0.99595 1.01103 1.69668 1.02398 1.45167 1.38841 0.84933 0.78122 0.78086 0.77227 1.19551 1.19657 1.19840 1.23038 0.97857 0.97231 0.97614 1.23256 0.95875 0.99131 0.99243 0.93547 0.91081 0.91439 0.90492 0.89378 0.74681 0.92279 0.91623 0.88355 0.91285 0.83384 0.91406 0.87974 0.76969 0.91322 0.91550 0.88087 0.86493 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.92 71.98 0.64 -0.53 16 2 C -0.12 -1.01 3.65 -9.80 -0.04 -1.05 16 3 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 4 C 0.04 0.49 7.37 72.36 0.53 1.02 16 5 O -0.39 -8.27 10.80 -130.75 -1.41 -9.68 16 6 C 0.06 0.87 3.76 30.53 0.11 0.99 16 7 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 8 C 0.51 10.87 7.21 87.66 0.63 11.50 16 9 O -0.58 -18.40 16.57 15.20 0.25 -18.15 16 10 N -0.71 -10.71 5.54 -463.07 -2.57 -13.27 16 11 C 0.14 2.28 5.51 86.38 0.48 2.75 16 12 C -0.11 -1.71 3.53 -10.20 -0.04 -1.75 16 13 H 0.10 1.60 8.09 -2.39 -0.02 1.58 16 14 C -0.15 -2.40 7.16 31.18 0.22 -2.17 16 15 C 0.06 1.20 4.28 45.44 0.19 1.40 16 16 H 0.09 1.76 7.87 -2.38 -0.02 1.74 16 17 N -0.66 -19.15 6.19 -492.86 -3.05 -22.20 16 18 C 0.07 2.15 6.01 85.56 0.51 2.67 16 19 C 0.44 20.19 7.82 87.66 0.69 20.88 16 20 O -0.62 -33.66 15.78 -3.05 -0.05 -33.71 16 21 N -0.57 -28.81 5.29 -306.98 -1.62 -30.44 16 22 C -0.33 -18.71 9.68 84.04 0.81 -17.90 16 23 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 24 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 25 N -0.92 -48.96 13.05 21.66 0.28 -48.67 16 26 Si 0.99 42.29 29.55 68.60 2.03 44.31 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 28 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 29 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 30 C -0.12 -2.13 7.44 31.12 0.23 -1.90 16 31 C -0.14 -1.39 6.12 31.90 0.20 -1.20 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.09 1.05 7.69 -2.39 -0.02 1.03 16 37 H 0.42 3.87 8.47 -92.71 -0.79 3.09 16 38 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.19 7.84 -2.38 -0.02 1.17 16 40 H 0.10 1.34 7.90 -2.39 -0.02 1.32 16 41 H 0.07 1.11 8.07 -2.39 -0.02 1.09 16 42 H 0.35 10.32 7.83 -89.69 -0.70 9.61 16 43 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.10 3.03 8.13 -2.39 -0.02 3.01 16 45 H 0.40 18.90 7.90 -92.71 -0.73 18.17 16 46 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 47 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 48 H 0.10 1.50 8.10 -2.39 -0.02 1.48 16 49 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 50 H 0.07 0.94 7.78 -2.39 -0.02 0.92 16 Total: -1.00 -76.70 410.59 -1.74 -78.44 By element: Atomic # 1 Polarization: 40.12 SS G_CDS: -1.26 Total: 38.86 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 5.65 Total: 14.50 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -6.96 Total: -114.58 kcal Atomic # 8 Polarization: -60.33 SS G_CDS: -1.21 Total: -61.54 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -76.70 -1.74 -78.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263867294.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.639 kcal (2) G-P(sol) polarization free energy of solvation -76.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds