Wall clock time and date at job start Tue Mar 31 2020 22:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.99509 * 2 1 4 4 O 1.43748 * 109.88080 * 121.08516 * 2 1 3 5 5 C 1.44384 * 106.97667 * 145.93700 * 4 2 1 6 6 C 1.54993 * 103.49059 * 319.93947 * 5 4 2 7 7 C 1.54103 * 109.88209 * 238.91552 * 2 1 3 8 8 H 1.09004 * 110.48713 * 357.35977 * 7 2 1 9 9 C 1.50703 * 110.48769 * 119.86852 * 7 2 1 10 10 O 1.21278 * 119.99985 * 0.02562 * 9 7 2 11 11 N 1.34779 * 119.99944 * 180.02562 * 9 7 2 12 12 C 1.46499 * 119.99872 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.46840 * 180.02562 * 12 11 9 14 14 H 1.08996 * 112.85005 * 316.18669 * 13 12 11 15 15 C 1.53775 * 113.61825 * 87.50296 * 13 12 11 16 16 C 1.53776 * 87.08393 * 139.97637 * 15 13 12 17 17 H 1.09006 * 113.61153 * 89.11954 * 16 15 13 18 18 N 1.46896 * 113.69233 * 220.00421 * 16 15 13 19 19 C 1.46903 * 111.00621 * 252.53775 * 18 16 15 20 20 C 1.50697 * 109.47345 * 180.02562 * 19 18 16 21 21 O 1.21291 * 120.00175 * 359.97438 * 20 19 18 22 22 N 1.34772 * 119.99895 * 180.02562 * 20 19 18 23 23 C 1.37100 * 120.00293 * 179.97438 * 22 20 19 24 24 H 1.07998 * 119.99551 * 0.02562 * 23 22 20 25 25 C 1.38948 * 120.00194 * 179.97438 * 23 22 20 26 26 N 1.31410 * 120.00054 * 179.97438 * 25 23 22 27 27 Si 1.86803 * 120.00050 * 0.02562 * 25 23 22 28 28 H 1.48503 * 109.47106 * 89.99757 * 27 25 23 29 29 H 1.48494 * 109.47325 * 209.99830 * 27 25 23 30 30 H 1.48504 * 109.47122 * 330.00048 * 27 25 23 31 31 C 1.53774 * 87.08069 * 334.56900 * 16 15 13 32 32 H 1.09001 * 109.46937 * 181.08217 * 1 2 3 33 33 H 1.08991 * 109.47459 * 301.08020 * 1 2 3 34 34 H 1.09000 * 109.46943 * 61.08694 * 1 2 3 35 35 H 1.08998 * 110.61545 * 78.44229 * 5 4 2 36 36 H 1.08996 * 110.61506 * 201.27961 * 5 4 2 37 37 H 1.08995 * 110.90921 * 278.82684 * 6 5 4 38 38 H 1.09003 * 110.90586 * 155.21812 * 6 5 4 39 39 H 0.97000 * 119.99708 * 359.97438 * 11 9 7 40 40 H 1.09002 * 109.47391 * 59.99686 * 12 11 9 41 41 H 1.09001 * 109.46813 * 299.99742 * 12 11 9 42 42 H 1.09005 * 113.61502 * 254.53312 * 15 13 12 43 43 H 1.08999 * 113.61676 * 25.42734 * 15 13 12 44 44 H 1.00899 * 110.99747 * 128.58230 * 18 16 15 45 45 H 1.09003 * 109.46380 * 300.00458 * 19 18 16 46 46 H 1.09005 * 109.46627 * 59.99793 * 19 18 16 47 47 H 0.97008 * 120.00016 * 0.02562 * 22 20 19 48 48 H 0.96994 * 120.00076 * 179.97438 * 26 25 23 49 49 H 1.09006 * 113.61277 * 270.88016 * 31 16 15 50 50 H 1.09006 * 113.61790 * 139.97929 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0188 -0.6980 1.1577 5 6 3.2379 -1.3642 0.7647 6 6 2.9195 -1.8915 -0.6576 7 6 2.0540 -0.7482 -1.2411 8 1 1.2246 -1.1528 -1.8211 9 6 2.8946 0.1675 -2.0932 10 8 3.0707 1.3187 -1.7547 11 7 3.4505 -0.2928 -3.2314 12 6 4.2680 0.5972 -4.0594 13 6 4.7744 -0.1677 -5.2839 14 1 5.1373 -1.1659 -5.0391 15 6 3.8013 -0.1386 -6.4743 16 6 5.0345 0.0305 -7.3772 17 1 5.4678 -0.9141 -7.7060 18 7 4.8331 0.9800 -8.4798 19 6 4.7218 0.2780 -9.7655 20 6 4.5169 1.2823 -10.8702 21 8 4.4679 2.4664 -10.6119 22 7 4.3871 0.8647 -12.1450 23 6 4.2002 1.7784 -13.1500 24 1 4.1574 2.8327 -12.9201 25 6 4.0670 1.3478 -14.4643 26 7 3.8873 2.2235 -15.4275 27 14 4.1417 -0.4758 -14.8620 28 1 2.7752 -1.0533 -14.7959 29 1 4.6923 -0.6624 -16.2284 30 1 5.0170 -1.1616 -13.8777 31 6 5.7450 0.6432 -6.1587 32 1 -0.3633 -1.0275 0.0194 33 1 -0.3634 0.5305 0.8800 34 1 -0.3633 0.4969 -0.8996 35 1 4.0685 -0.6589 0.7356 36 1 3.4599 -2.1890 1.4417 37 1 2.3540 -2.8220 -0.6099 38 1 3.8332 -2.0224 -1.2374 39 1 3.3099 -1.2137 -3.5019 40 1 5.1173 0.9562 -3.4780 41 1 3.6659 1.4455 -4.3848 42 1 3.2724 -1.0791 -6.6290 43 1 3.1378 0.7262 -6.4749 44 1 5.5721 1.6664 -8.5055 45 1 5.6361 -0.2855 -9.9520 46 1 3.8736 -0.4059 -9.7337 47 1 4.4252 -0.0824 -12.3514 48 1 3.7947 1.9230 -16.3451 49 1 5.6130 1.7218 -6.0730 50 1 6.7854 0.3338 -6.0587 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264406864.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:49 Heat of formation + Delta-G solvation = -127.879305 kcal Electronic energy + Delta-G solvation = -28569.265285 eV Core-core repulsion = 24402.643331 eV Total energy + Delta-G solvation = -4166.621954 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.64525 -40.59385 -39.99168 -39.25806 -36.27924 -35.86131 -34.57781 -33.74084 -33.50171 -32.40298 -29.54043 -28.15753 -27.01503 -26.58580 -25.51561 -23.50173 -22.94672 -22.33769 -21.34388 -21.16909 -20.50916 -20.02625 -18.57876 -17.78787 -17.32801 -17.09774 -16.97833 -16.76240 -16.51072 -16.37220 -16.04982 -15.91136 -15.47256 -15.41698 -14.94596 -14.72649 -14.62839 -14.30456 -14.18888 -13.99031 -13.57269 -13.51140 -13.29091 -13.27993 -13.05893 -12.81943 -12.71387 -12.44141 -12.40865 -12.29698 -12.05881 -11.99161 -11.88159 -11.78499 -11.61007 -11.51319 -11.14453 -10.95382 -10.59522 -10.41319 -10.25384 -10.12038 -9.28042 -8.41636 -6.03045 1.29943 1.36208 1.45098 1.52711 1.95624 2.09222 2.23236 2.77019 2.84826 3.14664 3.40563 3.43167 3.59297 3.65176 3.69269 3.82764 3.92332 3.99378 4.05600 4.16875 4.20685 4.30859 4.32450 4.40625 4.44024 4.47904 4.57313 4.62400 4.68729 4.74384 4.79471 4.85553 4.92937 4.93525 4.98890 5.02992 5.08711 5.15130 5.22748 5.29512 5.38626 5.50559 5.56983 5.88925 5.92480 6.18369 6.42574 6.50565 6.59786 6.87740 7.19437 7.39427 7.96627 8.76143 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025980 B = 0.001519 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.502263 B =18431.466695 C =18518.241687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.073 3.927 3 H 0.061 0.939 4 O -0.393 6.393 5 C 0.035 3.965 6 C -0.133 4.133 7 C -0.138 4.138 8 H 0.140 0.860 9 C 0.515 3.485 10 O -0.586 6.586 11 N -0.708 5.708 12 C 0.133 3.867 13 C -0.100 4.100 14 H 0.127 0.873 15 C -0.122 4.122 16 C 0.054 3.946 17 H 0.096 0.904 18 N -0.679 5.679 19 C 0.063 3.937 20 C 0.446 3.554 21 O -0.617 6.617 22 N -0.590 5.590 23 C -0.332 4.332 24 H 0.053 0.947 25 C -0.016 4.016 26 N -0.935 5.935 27 Si 0.968 3.032 28 H -0.257 1.257 29 H -0.275 1.275 30 H -0.229 1.229 31 C -0.132 4.132 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.047 0.953 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.419 0.581 40 H 0.061 0.939 41 H 0.047 0.953 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.344 0.656 45 H 0.079 0.921 46 H 0.113 0.887 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.075 0.925 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.162 -20.914 30.298 36.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 H 0.079 0.921 4 O -0.313 6.313 5 C -0.041 4.041 6 C -0.171 4.171 7 C -0.159 4.159 8 H 0.157 0.843 9 C 0.302 3.698 10 O -0.466 6.466 11 N -0.360 5.360 12 C 0.009 3.991 13 C -0.119 4.119 14 H 0.145 0.855 15 C -0.160 4.160 16 C -0.055 4.055 17 H 0.113 0.887 18 N -0.312 5.312 19 C -0.069 4.069 20 C 0.234 3.766 21 O -0.502 6.502 22 N -0.232 5.232 23 C -0.461 4.461 24 H 0.071 0.929 25 C -0.215 4.215 26 N -0.576 5.576 27 Si 0.787 3.213 28 H -0.181 1.181 29 H -0.200 1.200 30 H -0.152 1.152 31 C -0.170 4.170 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.118 0.882 39 H 0.256 0.744 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.163 0.837 45 H 0.096 0.904 46 H 0.131 0.869 47 H 0.226 0.774 48 H 0.089 0.911 49 H 0.093 0.907 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.537 -19.207 30.764 36.272 hybrid contribution 0.864 -0.301 -1.402 1.674 sum 0.327 -19.509 29.362 35.254 Atomic orbital electron populations 1.21906 0.92030 1.03617 1.02846 1.22776 0.96251 0.95906 0.83559 0.92134 1.88869 1.40462 1.68080 1.33884 1.23760 0.86888 0.96698 0.96728 1.23187 1.00738 0.97663 0.95504 1.22769 0.99965 0.96241 0.96958 0.84274 1.20826 0.79538 0.87864 0.81560 1.90703 1.62378 1.20996 1.72516 1.45843 1.51389 1.16122 1.22668 1.21287 0.94002 0.92685 0.91115 1.22542 0.97205 1.00588 0.91609 0.85515 1.23154 0.96332 1.02274 0.94254 1.23203 0.97895 0.95365 0.89022 0.88675 1.60233 1.52816 1.16163 1.01972 1.21691 1.03502 0.94124 0.87578 1.21112 0.81253 0.90257 0.83995 1.90547 1.55757 1.20424 1.83457 1.42032 1.66556 1.08445 1.06175 1.19013 1.49173 0.90634 0.87268 0.92922 1.26158 0.95938 1.05162 0.94194 1.69809 1.49260 1.37198 1.01283 0.85331 0.80207 0.76402 0.79343 1.18125 1.20039 1.15240 1.23179 0.99325 1.00149 0.94392 0.90395 0.92167 0.90616 0.93466 0.86560 0.86765 0.88203 0.74395 0.92060 0.93443 0.89926 0.91626 0.83708 0.90372 0.86949 0.77400 0.91135 0.90666 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.36 71.98 0.67 -1.19 16 2 C 0.07 1.22 3.67 30.97 0.11 1.33 16 3 H 0.06 1.41 6.43 -2.39 -0.02 1.40 16 4 O -0.39 -7.07 11.19 -148.98 -1.67 -8.74 16 5 C 0.04 0.40 7.72 72.66 0.56 0.96 16 6 C -0.13 -0.81 6.70 31.89 0.21 -0.60 16 7 C -0.14 -1.51 3.07 -10.55 -0.03 -1.54 16 8 H 0.14 0.82 7.70 -2.38 -0.02 0.80 16 9 C 0.52 8.71 7.05 87.66 0.62 9.33 16 10 O -0.59 -16.08 15.25 -3.02 -0.05 -16.12 16 11 N -0.71 -8.02 5.41 -463.05 -2.50 -10.52 16 12 C 0.13 1.98 5.51 86.38 0.48 2.45 16 13 C -0.10 -1.08 3.75 -10.27 -0.04 -1.12 16 14 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 15 C -0.12 -1.87 7.43 31.12 0.23 -1.64 16 16 C 0.05 0.95 4.14 45.44 0.19 1.14 16 17 H 0.10 1.28 7.87 -2.38 -0.02 1.26 16 18 N -0.68 -18.93 6.19 -492.86 -3.05 -21.98 16 19 C 0.06 1.84 6.01 85.56 0.51 2.36 16 20 C 0.45 19.99 7.82 87.66 0.69 20.68 16 21 O -0.62 -34.53 15.78 -3.06 -0.05 -34.58 16 22 N -0.59 -27.62 5.09 -306.99 -1.56 -29.19 16 23 C -0.33 -19.50 10.16 84.04 0.85 -18.65 16 24 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 25 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 26 N -0.93 -56.43 13.96 21.66 0.30 -56.13 16 27 Si 0.97 38.19 27.74 68.60 1.90 40.09 16 28 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 29 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 30 H -0.23 -7.48 6.52 99.48 0.65 -6.83 16 31 C -0.13 -1.94 7.21 31.12 0.22 -1.71 16 32 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.11 0.21 8.14 -2.39 -0.02 0.20 16 38 H 0.10 0.33 7.74 -2.39 -0.02 0.31 16 39 H 0.42 1.76 8.47 -92.71 -0.79 0.97 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.05 0.98 7.84 -2.39 -0.02 0.96 16 42 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 43 H 0.07 1.42 7.89 -2.39 -0.02 1.40 16 44 H 0.34 10.49 8.24 -89.69 -0.74 9.75 16 45 H 0.08 1.80 8.13 -2.39 -0.02 1.78 16 46 H 0.11 2.74 8.14 -2.38 -0.02 2.73 16 47 H 0.39 14.89 5.76 -92.70 -0.53 14.35 16 48 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 49 H 0.07 1.42 8.10 -2.38 -0.02 1.40 16 50 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -86.59 405.88 -2.07 -88.66 By element: Atomic # 1 Polarization: 38.27 SS G_CDS: -1.15 Total: 37.12 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 5.75 Total: 11.39 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -6.81 Total: -117.82 kcal Atomic # 8 Polarization: -57.68 SS G_CDS: -1.76 Total: -59.44 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 1.90 Total: 40.09 kcal Total: -86.59 -2.07 -88.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264406864.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.218 kcal (2) G-P(sol) polarization free energy of solvation -86.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds