Wall clock time and date at job start Tue Mar 31 2020 22:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.86976 * 2 1 4 4 O 1.43738 * 109.87817 * 238.83341 * 2 1 3 5 5 C 1.44376 * 106.97778 * 267.09207 * 4 2 1 6 6 C 1.55229 * 103.56519 * 320.00933 * 5 4 2 7 7 C 1.54100 * 109.87808 * 121.00460 * 2 1 3 8 8 H 1.09005 * 110.49108 * 358.58572 * 7 2 1 9 9 C 1.50699 * 110.48865 * 236.06849 * 7 2 1 10 10 O 1.21276 * 120.00025 * 1.85036 * 9 7 2 11 11 N 1.34783 * 120.00180 * 181.84063 * 9 7 2 12 12 C 1.46497 * 120.00028 * 180.02562 * 11 9 7 13 13 C 1.53003 * 109.47017 * 180.02562 * 12 11 9 14 14 H 1.09004 * 112.84496 * 43.80429 * 13 12 11 15 15 C 1.53778 * 113.61196 * 174.99730 * 13 12 11 16 16 C 1.53787 * 87.08035 * 140.06532 * 15 13 12 17 17 H 1.09004 * 113.61202 * 89.11582 * 16 15 13 18 18 N 1.46900 * 113.61643 * 220.02069 * 16 15 13 19 19 C 1.46903 * 110.99785 * 204.99836 * 18 16 15 20 20 C 1.50700 * 109.46732 * 179.97438 * 19 18 16 21 21 O 1.21292 * 120.00169 * 0.02562 * 20 19 18 22 22 N 1.34780 * 119.99711 * 179.97438 * 20 19 18 23 23 C 1.37092 * 119.99985 * 179.97438 * 22 20 19 24 24 H 1.08007 * 120.00091 * 0.02562 * 23 22 20 25 25 C 1.38951 * 120.00210 * 180.02562 * 23 22 20 26 26 N 1.31410 * 120.00208 * 180.02562 * 25 23 22 27 27 Si 1.86797 * 119.99772 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.47242 * 89.99854 * 27 25 23 29 29 H 1.48500 * 109.47153 * 209.99698 * 27 25 23 30 30 H 1.48499 * 109.47392 * 330.00197 * 27 25 23 31 31 C 1.53778 * 113.68969 * 272.53495 * 13 12 11 32 32 H 1.09009 * 109.47044 * 298.99572 * 1 2 3 33 33 H 1.08995 * 109.47128 * 58.99526 * 1 2 3 34 34 H 1.09002 * 109.46980 * 178.99975 * 1 2 3 35 35 H 1.08993 * 110.62121 * 78.44312 * 5 4 2 36 36 H 1.09004 * 110.61983 * 201.28322 * 5 4 2 37 37 H 1.09002 * 110.89257 * 278.74914 * 6 5 4 38 38 H 1.09001 * 111.02057 * 155.07176 * 6 5 4 39 39 H 0.96999 * 119.99784 * 0.02562 * 11 9 7 40 40 H 1.08994 * 109.47253 * 60.00133 * 12 11 9 41 41 H 1.08999 * 109.47048 * 300.00272 * 12 11 9 42 42 H 1.08998 * 113.61879 * 25.52015 * 15 13 12 43 43 H 1.08997 * 113.69304 * 254.62101 * 15 13 12 44 44 H 1.00896 * 110.99599 * 328.95196 * 18 16 15 45 45 H 1.08996 * 109.46965 * 299.99722 * 19 18 16 46 46 H 1.09004 * 109.47006 * 59.99802 * 19 18 16 47 47 H 0.97001 * 119.99834 * 0.02562 * 22 20 19 48 48 H 0.97000 * 120.00086 * 180.02562 * 26 25 23 49 49 H 1.08993 * 113.61229 * 105.46192 * 31 13 12 50 50 H 1.09000 * 113.61263 * 334.55842 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6996 -1.1566 5 6 2.2280 -2.0724 -0.7618 6 6 2.8317 -1.9535 0.6633 7 6 2.0540 -0.7465 1.2421 8 1 1.2238 -1.0885 1.8602 9 6 2.9744 0.1399 2.0410 10 8 3.1768 1.2815 1.6850 11 7 3.5725 -0.3358 3.1512 12 6 4.4668 0.5261 3.9281 13 6 5.0093 -0.2521 5.1285 14 1 5.3202 -1.2646 4.8711 15 6 6.0559 0.5250 5.9443 16 6 5.3911 -0.0562 7.2033 17 1 5.8064 -1.0152 7.5132 18 7 5.2840 0.9047 8.3093 19 6 5.2175 0.2127 9.6033 20 6 5.1092 1.2285 10.7112 21 8 5.0889 2.4125 10.4485 22 7 5.0339 0.8214 11.9938 23 6 4.9358 1.7455 13.0017 24 1 4.9186 2.7998 12.7679 25 6 4.8587 1.3258 14.3241 26 7 4.7643 2.2116 15.2901 27 14 4.8893 -0.4976 14.7285 28 1 6.2935 -0.9362 14.9312 29 1 4.1102 -0.7427 15.9687 30 1 4.2886 -1.2636 13.6070 31 6 4.1047 -0.1823 6.3701 32 1 -0.3633 0.4982 0.8989 33 1 -0.3633 0.5293 -0.8808 34 1 -0.3633 -1.0275 -0.0179 35 1 1.2814 -2.6118 -0.7320 36 1 2.9273 -2.5641 -1.4381 37 1 3.8999 -1.7416 0.6165 38 1 2.6404 -2.8549 1.2455 39 1 3.4108 -1.2489 3.4358 40 1 3.9160 1.3987 4.2791 41 1 5.2967 0.8489 3.2996 42 1 5.9596 1.6075 5.8599 43 1 7.0775 0.1777 5.7902 44 1 6.0476 1.5640 8.2905 45 1 4.3448 -0.4401 9.6218 46 1 6.1197 -0.3828 9.7437 47 1 5.0497 -0.1255 12.2038 48 1 4.7108 1.9186 16.2133 49 1 3.5506 -1.1017 6.5588 50 1 3.4749 0.7068 6.4020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264406866.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:54 Heat of formation + Delta-G solvation = -98.971726 kcal Electronic energy + Delta-G solvation = -28522.593913 eV Core-core repulsion = 24357.225485 eV Total energy + Delta-G solvation = -4165.368427 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.97614 -39.71956 -38.76585 -38.22013 -35.24002 -34.14322 -33.45030 -32.85084 -31.68984 -31.64898 -28.72398 -27.23484 -26.31365 -25.80110 -23.91049 -22.85889 -22.11655 -21.56726 -20.51803 -19.74542 -19.28893 -18.31242 -18.06266 -16.99679 -16.44489 -16.25699 -15.96835 -15.88203 -15.39848 -15.24615 -14.89035 -14.76800 -14.44905 -14.18533 -13.95076 -13.81584 -13.63096 -13.22663 -13.15018 -12.71395 -12.55517 -12.52473 -12.48347 -12.38253 -12.15224 -11.96142 -11.73039 -11.63131 -11.49868 -11.35947 -11.19957 -11.05250 -10.84926 -10.61067 -10.45584 -10.19048 -10.02741 -9.98472 -9.58864 -9.41566 -8.59049 -8.21925 -8.16169 -6.32361 -3.83845 2.23058 2.72043 3.00691 3.04606 3.13200 3.37540 3.72753 3.90649 4.05942 4.09068 4.10447 4.24131 4.30565 4.44624 4.55718 4.57753 4.61236 4.65250 4.75435 4.93077 4.93787 4.96750 5.03048 5.06220 5.15754 5.16785 5.20680 5.28766 5.39106 5.42557 5.52808 5.57376 5.65122 5.67189 5.68665 5.76402 5.76853 5.84676 5.90285 5.99861 6.10826 6.25453 6.43624 7.08259 7.14882 7.55595 7.57485 7.82075 8.13347 8.58481 8.93756 9.41099 9.81464 10.80793 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025629 B = 0.001509 C = 0.001504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.231185 B =18548.917263 C =18614.313522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.080 3.920 3 H 0.118 0.882 4 O -0.368 6.368 5 C 0.046 3.954 6 C -0.145 4.145 7 C -0.143 4.143 8 H 0.112 0.888 9 C 0.521 3.479 10 O -0.534 6.534 11 N -0.725 5.725 12 C 0.130 3.870 13 C -0.125 4.125 14 H 0.093 0.907 15 C -0.131 4.131 16 C 0.059 3.941 17 H 0.071 0.929 18 N -0.656 5.656 19 C 0.048 3.952 20 C 0.449 3.551 21 O -0.564 6.564 22 N -0.591 5.591 23 C -0.306 4.306 24 H 0.120 0.880 25 C 0.041 3.959 26 N -0.881 5.881 27 Si 0.880 3.120 28 H -0.271 1.271 29 H -0.276 1.276 30 H -0.270 1.270 31 C -0.121 4.121 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.401 0.599 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.069 0.931 44 H 0.352 0.648 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.063 0.937 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.503 -15.951 -29.382 33.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.022 3.978 3 H 0.136 0.864 4 O -0.286 6.286 5 C -0.031 4.031 6 C -0.183 4.183 7 C -0.165 4.165 8 H 0.130 0.870 9 C 0.307 3.693 10 O -0.410 6.410 11 N -0.376 5.376 12 C 0.007 3.993 13 C -0.144 4.144 14 H 0.112 0.888 15 C -0.170 4.170 16 C -0.052 4.052 17 H 0.089 0.911 18 N -0.289 5.289 19 C -0.085 4.085 20 C 0.235 3.765 21 O -0.446 6.446 22 N -0.230 5.230 23 C -0.434 4.434 24 H 0.137 0.863 25 C -0.162 4.162 26 N -0.521 5.521 27 Si 0.707 3.293 28 H -0.197 1.197 29 H -0.202 1.202 30 H -0.195 1.195 31 C -0.159 4.159 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.235 0.765 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.113 0.887 43 H 0.088 0.912 44 H 0.173 0.827 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.081 0.919 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.017 -14.073 -29.811 33.210 hybrid contribution 0.742 -2.436 1.215 2.822 sum -3.275 -16.509 -28.596 33.181 Atomic orbital electron populations 1.22285 0.95036 1.02401 1.03026 1.22806 0.93986 0.98342 0.82686 0.86420 1.88960 1.86086 1.20443 1.33162 1.23585 0.99956 0.84931 0.94635 1.23193 1.00926 0.97041 0.97167 1.22787 0.98940 0.96434 0.98336 0.87004 1.20264 0.80594 0.87805 0.80667 1.90714 1.62560 1.18925 1.68830 1.45976 1.48173 1.16760 1.26678 1.21423 0.93005 0.93311 0.91570 1.22644 0.98580 0.99677 0.93529 0.88844 1.23196 0.97708 1.01240 0.94851 1.22987 0.96938 0.95183 0.90056 0.91106 1.60222 1.51765 1.16351 1.00529 1.21767 1.01048 0.95975 0.89745 1.19739 0.84034 0.89644 0.83109 1.90569 1.53855 1.17477 1.82721 1.42211 1.66793 1.08064 1.05965 1.19441 1.47722 0.91921 0.84355 0.86285 1.25040 0.97644 0.98115 0.95360 1.69621 1.49066 1.33415 1.00003 0.86666 0.78849 0.84932 0.78898 1.19682 1.20156 1.19508 1.23202 0.96647 1.02629 0.93442 0.91306 0.91403 0.92377 0.91898 0.88655 0.89906 0.89228 0.76545 0.90765 0.91378 0.88706 0.91221 0.82699 0.89587 0.93803 0.79719 0.91611 0.91860 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 9.30 37.16 0.35 -0.73 16 2 C 0.08 0.65 3.71 -26.15 -0.10 0.56 16 3 H 0.12 1.24 6.44 -51.93 -0.33 0.91 16 4 O -0.37 -3.34 11.19 -35.23 -0.39 -3.74 16 5 C 0.05 0.24 7.67 38.34 0.29 0.54 16 6 C -0.15 -0.65 6.69 -24.60 -0.16 -0.81 16 7 C -0.14 -0.90 3.06 -90.24 -0.28 -1.18 16 8 H 0.11 0.49 7.70 -51.93 -0.40 0.09 16 9 C 0.52 4.71 7.03 -10.98 -0.08 4.64 16 10 O -0.53 -7.15 15.26 5.56 0.08 -7.06 16 11 N -0.72 -5.00 5.52 -60.30 -0.33 -5.33 16 12 C 0.13 1.06 5.51 -4.04 -0.02 1.04 16 13 C -0.13 -0.88 3.75 -89.81 -0.34 -1.22 16 14 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 15 C -0.13 -1.12 7.21 -25.92 -0.19 -1.31 16 16 C 0.06 0.61 4.14 -66.90 -0.28 0.34 16 17 H 0.07 0.68 7.87 -51.93 -0.41 0.27 16 18 N -0.66 -9.67 6.18 -107.12 -0.66 -10.33 16 19 C 0.05 0.76 6.01 -4.97 -0.03 0.73 16 20 C 0.45 10.11 7.82 -10.98 -0.09 10.03 16 21 O -0.56 -15.14 15.78 5.55 0.09 -15.05 16 22 N -0.59 -14.00 5.09 -10.96 -0.06 -14.05 16 23 C -0.31 -8.65 10.16 -14.93 -0.15 -8.80 16 24 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 25 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 26 N -0.88 -25.70 13.96 55.50 0.77 -24.93 16 27 Si 0.88 19.21 27.74 -169.99 -4.71 14.49 16 28 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 29 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 30 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 31 C -0.12 -1.11 7.43 -25.92 -0.19 -1.30 16 32 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.30 8.11 -51.93 -0.42 -0.12 16 35 H 0.06 0.25 8.11 -51.93 -0.42 -0.17 16 36 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.44 7.86 -51.93 -0.41 0.03 16 38 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.40 1.67 8.47 -40.82 -0.35 1.33 16 40 H 0.07 0.75 7.85 -51.93 -0.41 0.34 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.35 5.43 8.24 -39.29 -0.32 5.10 16 45 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 46 H 0.04 0.61 8.13 -51.93 -0.42 0.19 16 47 H 0.37 7.65 5.76 -40.82 -0.24 7.42 16 48 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.09 1.05 7.90 -51.93 -0.41 0.64 16 LS Contribution 405.97 15.07 6.12 6.12 Total: -1.00 -35.55 405.97 -8.77 -44.32 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -8.32 Total: 12.02 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -1.35 Total: 3.55 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.28 Total: -54.64 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.22 Total: -25.85 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.55 -8.77 -44.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264406866.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.656 kcal (2) G-P(sol) polarization free energy of solvation -35.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds