Wall clock time and date at job start Tue Mar 31 2020 22:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.86976 * 2 1 4 4 O 1.43738 * 109.87817 * 238.83341 * 2 1 3 5 5 C 1.44376 * 106.97778 * 267.09207 * 4 2 1 6 6 C 1.55229 * 103.56519 * 320.00933 * 5 4 2 7 7 C 1.54100 * 109.87808 * 121.00460 * 2 1 3 8 8 H 1.09005 * 110.49108 * 358.58572 * 7 2 1 9 9 C 1.50699 * 110.48865 * 236.06849 * 7 2 1 10 10 O 1.21276 * 120.00025 * 1.85036 * 9 7 2 11 11 N 1.34783 * 120.00180 * 181.84063 * 9 7 2 12 12 C 1.46497 * 120.00028 * 180.02562 * 11 9 7 13 13 C 1.53003 * 109.47017 * 180.02562 * 12 11 9 14 14 H 1.09004 * 112.84496 * 43.80429 * 13 12 11 15 15 C 1.53778 * 113.61196 * 174.99730 * 13 12 11 16 16 C 1.53787 * 87.08035 * 140.06532 * 15 13 12 17 17 H 1.09004 * 113.61202 * 89.11582 * 16 15 13 18 18 N 1.46900 * 113.61643 * 220.02069 * 16 15 13 19 19 C 1.46903 * 110.99785 * 204.99836 * 18 16 15 20 20 C 1.50700 * 109.46732 * 179.97438 * 19 18 16 21 21 O 1.21292 * 120.00169 * 0.02562 * 20 19 18 22 22 N 1.34780 * 119.99711 * 179.97438 * 20 19 18 23 23 C 1.37092 * 119.99985 * 179.97438 * 22 20 19 24 24 H 1.08007 * 120.00091 * 0.02562 * 23 22 20 25 25 C 1.38951 * 120.00210 * 180.02562 * 23 22 20 26 26 N 1.31410 * 120.00208 * 180.02562 * 25 23 22 27 27 Si 1.86797 * 119.99772 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.47242 * 89.99854 * 27 25 23 29 29 H 1.48500 * 109.47153 * 209.99698 * 27 25 23 30 30 H 1.48499 * 109.47392 * 330.00197 * 27 25 23 31 31 C 1.53778 * 113.68969 * 272.53495 * 13 12 11 32 32 H 1.09009 * 109.47044 * 298.99572 * 1 2 3 33 33 H 1.08995 * 109.47128 * 58.99526 * 1 2 3 34 34 H 1.09002 * 109.46980 * 178.99975 * 1 2 3 35 35 H 1.08993 * 110.62121 * 78.44312 * 5 4 2 36 36 H 1.09004 * 110.61983 * 201.28322 * 5 4 2 37 37 H 1.09002 * 110.89257 * 278.74914 * 6 5 4 38 38 H 1.09001 * 111.02057 * 155.07176 * 6 5 4 39 39 H 0.96999 * 119.99784 * 0.02562 * 11 9 7 40 40 H 1.08994 * 109.47253 * 60.00133 * 12 11 9 41 41 H 1.08999 * 109.47048 * 300.00272 * 12 11 9 42 42 H 1.08998 * 113.61879 * 25.52015 * 15 13 12 43 43 H 1.08997 * 113.69304 * 254.62101 * 15 13 12 44 44 H 1.00896 * 110.99599 * 328.95196 * 18 16 15 45 45 H 1.08996 * 109.46965 * 299.99722 * 19 18 16 46 46 H 1.09004 * 109.47006 * 59.99802 * 19 18 16 47 47 H 0.97001 * 119.99834 * 0.02562 * 22 20 19 48 48 H 0.97000 * 120.00086 * 180.02562 * 26 25 23 49 49 H 1.08993 * 113.61229 * 105.46192 * 31 13 12 50 50 H 1.09000 * 113.61263 * 334.55842 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6996 -1.1566 5 6 2.2280 -2.0724 -0.7618 6 6 2.8317 -1.9535 0.6633 7 6 2.0540 -0.7465 1.2421 8 1 1.2238 -1.0885 1.8602 9 6 2.9744 0.1399 2.0410 10 8 3.1768 1.2815 1.6850 11 7 3.5725 -0.3358 3.1512 12 6 4.4668 0.5261 3.9281 13 6 5.0093 -0.2521 5.1285 14 1 5.3202 -1.2646 4.8711 15 6 6.0559 0.5250 5.9443 16 6 5.3911 -0.0562 7.2033 17 1 5.8064 -1.0152 7.5132 18 7 5.2840 0.9047 8.3093 19 6 5.2175 0.2127 9.6033 20 6 5.1092 1.2285 10.7112 21 8 5.0889 2.4125 10.4485 22 7 5.0339 0.8214 11.9938 23 6 4.9358 1.7455 13.0017 24 1 4.9186 2.7998 12.7679 25 6 4.8587 1.3258 14.3241 26 7 4.7643 2.2116 15.2901 27 14 4.8893 -0.4976 14.7285 28 1 6.2935 -0.9362 14.9312 29 1 4.1102 -0.7427 15.9687 30 1 4.2886 -1.2636 13.6070 31 6 4.1047 -0.1823 6.3701 32 1 -0.3633 0.4982 0.8989 33 1 -0.3633 0.5293 -0.8808 34 1 -0.3633 -1.0275 -0.0179 35 1 1.2814 -2.6118 -0.7320 36 1 2.9273 -2.5641 -1.4381 37 1 3.8999 -1.7416 0.6165 38 1 2.6404 -2.8549 1.2455 39 1 3.4108 -1.2489 3.4358 40 1 3.9160 1.3987 4.2791 41 1 5.2967 0.8489 3.2996 42 1 5.9596 1.6075 5.8599 43 1 7.0775 0.1777 5.7902 44 1 6.0476 1.5640 8.2905 45 1 4.3448 -0.4401 9.6218 46 1 6.1197 -0.3828 9.7437 47 1 5.0497 -0.1255 12.2038 48 1 4.7108 1.9186 16.2133 49 1 3.5506 -1.1017 6.5588 50 1 3.4749 0.7068 6.4020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264406866.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:53 Heat of formation + Delta-G solvation = -128.818206 kcal Electronic energy + Delta-G solvation = -28523.888153 eV Core-core repulsion = 24357.225485 eV Total energy + Delta-G solvation = -4166.662668 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.59612 -40.59513 -40.00579 -39.32891 -36.27674 -35.85650 -34.56885 -33.73819 -33.45520 -32.13739 -29.58134 -28.26961 -27.23363 -26.58921 -25.52383 -23.40318 -22.70404 -22.28545 -21.34300 -21.15794 -20.50420 -20.02516 -18.66908 -17.84954 -17.44806 -17.02943 -16.88870 -16.85296 -16.55107 -16.47866 -15.94512 -15.60897 -15.44141 -15.32595 -14.95371 -14.80980 -14.57567 -14.29704 -14.24420 -13.99401 -13.71617 -13.54852 -13.28992 -13.09391 -12.99150 -12.89165 -12.76751 -12.45876 -12.41569 -12.35664 -11.99902 -11.93580 -11.83215 -11.79018 -11.61397 -11.51539 -11.14499 -10.86656 -10.61057 -10.41168 -10.25459 -10.11238 -9.27949 -8.41583 -6.02964 1.30248 1.35905 1.45243 1.55164 1.95807 2.10864 2.23301 2.76913 2.90595 3.14956 3.40689 3.44488 3.56676 3.63277 3.74949 3.81982 3.92295 3.99780 4.14561 4.16983 4.23454 4.30575 4.33242 4.41692 4.44138 4.47920 4.57368 4.61781 4.65443 4.74156 4.83602 4.85427 4.92684 4.93991 4.98900 5.04252 5.13211 5.15292 5.24390 5.29803 5.39081 5.50784 5.57116 5.92495 5.95254 6.18534 6.42631 6.51847 6.59867 6.87820 7.20989 7.39497 7.96738 8.76197 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025629 B = 0.001509 C = 0.001504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.231185 B =18548.917263 C =18614.313522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.073 3.927 3 H 0.082 0.918 4 O -0.399 6.399 5 C 0.037 3.963 6 C -0.136 4.136 7 C -0.136 4.136 8 H 0.140 0.860 9 C 0.515 3.485 10 O -0.587 6.587 11 N -0.708 5.708 12 C 0.133 3.867 13 C -0.100 4.100 14 H 0.126 0.874 15 C -0.132 4.132 16 C 0.055 3.945 17 H 0.096 0.904 18 N -0.679 5.679 19 C 0.063 3.937 20 C 0.446 3.554 21 O -0.617 6.617 22 N -0.590 5.590 23 C -0.332 4.332 24 H 0.053 0.947 25 C -0.016 4.016 26 N -0.935 5.935 27 Si 0.968 3.032 28 H -0.256 1.256 29 H -0.276 1.276 30 H -0.230 1.230 31 C -0.121 4.121 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.126 0.874 39 H 0.418 0.582 40 H 0.047 0.953 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.344 0.656 45 H 0.112 0.888 46 H 0.079 0.921 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.083 0.917 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.550 -21.886 -30.088 37.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.015 3.985 3 H 0.100 0.900 4 O -0.318 6.318 5 C -0.039 4.039 6 C -0.174 4.174 7 C -0.157 4.157 8 H 0.158 0.842 9 C 0.303 3.697 10 O -0.468 6.468 11 N -0.360 5.360 12 C 0.009 3.991 13 C -0.119 4.119 14 H 0.144 0.856 15 C -0.171 4.171 16 C -0.055 4.055 17 H 0.114 0.886 18 N -0.312 5.312 19 C -0.069 4.069 20 C 0.234 3.766 21 O -0.502 6.502 22 N -0.232 5.232 23 C -0.461 4.461 24 H 0.071 0.929 25 C -0.214 4.214 26 N -0.576 5.576 27 Si 0.787 3.213 28 H -0.180 1.180 29 H -0.201 1.201 30 H -0.153 1.153 31 C -0.160 4.160 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.123 0.877 37 H 0.091 0.909 38 H 0.144 0.856 39 H 0.256 0.744 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.163 0.837 45 H 0.130 0.870 46 H 0.097 0.903 47 H 0.226 0.774 48 H 0.089 0.911 49 H 0.101 0.899 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.067 -20.072 -30.535 36.767 hybrid contribution 0.771 -0.421 1.355 1.615 sum -3.297 -20.493 -29.180 35.809 Atomic orbital electron populations 1.22234 0.93646 1.03481 1.02840 1.22750 0.95074 0.97005 0.83632 0.90023 1.88923 1.86407 1.22545 1.33957 1.23857 1.01315 0.83319 0.95385 1.23220 0.99907 0.97379 0.96889 1.22795 0.99273 0.96223 0.97396 0.84242 1.20836 0.80543 0.87428 0.80928 1.90700 1.64434 1.21396 1.70247 1.45828 1.47112 1.17343 1.25701 1.21278 0.92617 0.93142 0.92077 1.22539 0.96955 1.00636 0.91803 0.85571 1.23179 0.99076 1.00391 0.94434 1.23206 0.98124 0.95252 0.88877 0.88627 1.60243 1.52014 1.17765 1.01158 1.21691 1.03762 0.93952 0.87492 1.21117 0.81105 0.90367 0.84031 1.90547 1.55379 1.20578 1.83682 1.42029 1.67432 1.08211 1.05533 1.19014 1.50184 0.90291 0.86606 0.92931 1.26158 0.95949 1.05155 0.94188 1.69812 1.49942 1.37004 1.00798 0.85331 0.79848 0.76448 0.79663 1.18050 1.20063 1.15274 1.23151 0.96305 1.02286 0.94220 0.90955 0.92224 0.90511 0.90044 0.87741 0.90885 0.85564 0.74406 0.93413 0.92247 0.90686 0.89529 0.83706 0.87016 0.90278 0.77396 0.91136 0.89885 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.30 71.98 0.67 -1.29 16 2 C 0.07 1.21 3.71 30.97 0.11 1.32 16 3 H 0.08 1.91 6.44 -2.38 -0.02 1.90 16 4 O -0.40 -7.14 11.19 -148.98 -1.67 -8.81 16 5 C 0.04 0.31 7.67 72.75 0.56 0.87 16 6 C -0.14 -0.80 6.69 31.98 0.21 -0.59 16 7 C -0.14 -1.46 3.06 -10.55 -0.03 -1.49 16 8 H 0.14 0.73 7.70 -2.38 -0.02 0.71 16 9 C 0.52 9.05 7.03 87.66 0.62 9.67 16 10 O -0.59 -16.65 15.26 -3.02 -0.05 -16.70 16 11 N -0.71 -8.42 5.52 -463.07 -2.56 -10.98 16 12 C 0.13 2.06 5.51 86.38 0.48 2.54 16 13 C -0.10 -1.12 3.75 -10.27 -0.04 -1.16 16 14 H 0.13 0.70 8.14 -2.38 -0.02 0.68 16 15 C -0.13 -1.99 7.21 31.12 0.22 -1.77 16 16 C 0.05 0.97 4.14 45.44 0.19 1.15 16 17 H 0.10 1.29 7.87 -2.39 -0.02 1.28 16 18 N -0.68 -19.02 6.18 -492.83 -3.05 -22.07 16 19 C 0.06 1.85 6.01 85.56 0.51 2.36 16 20 C 0.45 20.02 7.82 87.66 0.69 20.70 16 21 O -0.62 -34.58 15.78 -3.07 -0.05 -34.63 16 22 N -0.59 -27.65 5.09 -306.98 -1.56 -29.21 16 23 C -0.33 -19.52 10.16 84.04 0.85 -18.67 16 24 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 25 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 26 N -0.94 -56.46 13.96 21.66 0.30 -56.16 16 27 Si 0.97 38.20 27.74 68.60 1.90 40.10 16 28 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 29 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 30 H -0.23 -7.52 6.52 99.48 0.65 -6.88 16 31 C -0.12 -1.89 7.43 31.12 0.23 -1.66 16 32 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 0.62 8.11 -2.39 -0.02 0.60 16 35 H 0.08 0.39 8.11 -2.39 -0.02 0.37 16 36 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.07 0.60 7.86 -2.39 -0.02 0.58 16 38 H 0.13 -0.15 8.14 -2.39 -0.02 -0.17 16 39 H 0.42 1.90 8.47 -92.71 -0.79 1.11 16 40 H 0.05 1.01 7.85 -2.39 -0.02 0.99 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.07 1.44 8.10 -2.39 -0.02 1.42 16 43 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.34 10.54 8.24 -89.70 -0.74 9.80 16 45 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 46 H 0.08 1.81 8.13 -2.39 -0.02 1.79 16 47 H 0.39 14.90 5.76 -92.71 -0.53 14.37 16 48 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 49 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.07 1.43 7.90 -2.39 -0.02 1.41 16 Total: -1.00 -87.52 405.97 -2.13 -89.65 By element: Atomic # 1 Polarization: 38.37 SS G_CDS: -1.15 Total: 37.22 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 5.74 Total: 11.58 kcal Atomic # 7 Polarization: -111.55 SS G_CDS: -6.86 Total: -118.41 kcal Atomic # 8 Polarization: -58.38 SS G_CDS: -1.76 Total: -60.14 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 1.90 Total: 40.10 kcal Total: -87.52 -2.13 -89.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264406866.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.170 kcal (2) G-P(sol) polarization free energy of solvation -87.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds