Wall clock time and date at job start Tue Mar 31 2020 23:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47307 * 2 1 4 4 C 1.53001 * 109.47195 * 239.99812 * 2 1 3 5 5 N 1.46498 * 109.47302 * 185.00345 * 4 2 1 6 6 C 1.34777 * 120.00124 * 179.97438 * 5 4 2 7 7 O 1.21278 * 119.99640 * 359.71909 * 6 5 4 8 8 C 1.50694 * 120.00043 * 179.72372 * 6 5 4 9 9 H 1.08998 * 115.55730 * 60.06687 * 8 6 5 10 10 C 1.53056 * 117.50508 * 205.77006 * 8 6 5 11 11 C 1.52727 * 117.50777 * 274.35588 * 8 6 5 12 12 C 1.53248 * 117.83350 * 144.67263 * 11 8 6 13 13 C 1.53333 * 108.48232 * 265.32151 * 12 11 8 14 14 O 1.42867 * 109.31946 * 306.01771 * 13 12 11 15 15 C 1.42873 * 114.51556 * 64.36567 * 14 13 12 16 16 C 1.53247 * 117.83116 * 0.39795 * 11 8 6 17 17 N 1.46907 * 109.47068 * 119.99650 * 2 1 3 18 18 C 1.46890 * 111.00077 * 274.99913 * 17 2 1 19 19 C 1.50708 * 109.47024 * 179.97438 * 18 17 2 20 20 O 1.21294 * 119.99976 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00133 * 180.02562 * 19 18 17 22 22 C 1.37090 * 120.00373 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99631 * 0.02562 * 22 21 19 24 24 C 1.38949 * 120.00511 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99544 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00290 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47552 * 89.99446 * 26 24 22 28 28 H 1.48500 * 109.47136 * 210.00160 * 26 24 22 29 29 H 1.48503 * 109.46970 * 329.99485 * 26 24 22 30 30 H 1.08994 * 109.47611 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46682 * 300.00194 * 1 2 3 32 32 H 1.08999 * 109.46762 * 59.99537 * 1 2 3 33 33 H 1.09000 * 109.46869 * 64.99963 * 4 2 1 34 34 H 1.09005 * 109.46774 * 305.00250 * 4 2 1 35 35 H 0.97002 * 119.99822 * 359.72554 * 5 4 2 36 36 H 1.09000 * 117.50701 * 214.93250 * 10 8 6 37 37 H 1.08999 * 117.50942 * 359.97438 * 10 8 6 38 38 H 1.09001 * 109.63550 * 25.01959 * 12 11 8 39 39 H 1.08994 * 109.63332 * 145.62206 * 12 11 8 40 40 H 1.08995 * 109.49191 * 186.06612 * 13 12 11 41 41 H 1.08996 * 109.49699 * 65.97198 * 13 12 11 42 42 H 1.09008 * 109.49719 * 175.67668 * 15 14 13 43 43 H 1.09000 * 109.49850 * 55.59111 * 15 14 13 44 44 H 1.09000 * 109.63176 * 214.37988 * 16 11 8 45 45 H 1.08996 * 109.63323 * 334.97526 * 16 11 8 46 46 H 1.00900 * 110.99571 * 151.04049 * 17 2 1 47 47 H 1.08994 * 109.47536 * 299.99737 * 18 17 2 48 48 H 1.08995 * 109.47345 * 60.00331 * 18 17 2 49 49 H 0.97000 * 119.99902 * 359.97438 * 21 19 18 50 50 H 0.97005 * 119.99796 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1730 -1.4293 -2.1906 7 8 3.5694 -1.8892 -3.1367 8 6 5.6753 -1.5320 -2.1332 9 1 6.0771 -2.0766 -1.2788 10 6 6.4273 -1.6464 -3.4614 11 6 6.4839 -0.3476 -2.6583 12 6 7.7953 -0.0035 -1.9439 13 6 7.5095 1.0824 -0.8998 14 8 6.8605 2.1870 -1.5320 15 6 5.5696 1.8892 -2.0669 16 6 5.7130 0.8626 -3.1966 17 7 2.0197 -0.6925 1.1995 18 6 2.0825 0.2226 2.3469 19 6 2.5873 -0.5218 3.5561 20 8 2.8677 -1.6988 3.4703 21 7 2.7273 0.1202 4.7328 22 6 3.1861 -0.5570 5.8329 23 1 3.4357 -1.6050 5.7565 24 6 3.3299 0.1048 7.0462 25 7 3.0266 1.3801 7.1390 26 14 3.9557 -0.8179 8.5450 27 1 5.4366 -0.7239 8.6016 28 1 3.3743 -0.2191 9.7733 29 1 3.5534 -2.2444 8.4517 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.7516 -0.1584 -2.1369 34 1 1.6053 -1.7199 -1.2951 35 1 3.9827 -0.4591 -0.4336 36 1 7.3240 -2.2657 -3.4805 37 1 5.8353 -1.6478 -4.3766 38 1 8.1875 -0.8924 -1.4499 39 1 8.5207 0.3667 -2.6683 40 1 8.4475 1.4167 -0.4566 41 1 6.8628 0.6775 -0.1214 42 1 5.1190 2.8010 -2.4590 43 1 4.9359 1.4788 -1.2807 44 1 6.2617 1.3063 -4.0274 45 1 4.7253 0.5475 -3.5329 46 1 2.9173 -1.1205 1.0288 47 1 2.7589 1.0462 2.1182 48 1 1.0871 0.6163 2.5525 49 1 2.5034 1.0616 4.8013 50 1 3.1273 1.8422 7.9859 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266999016.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:46 Heat of formation + Delta-G solvation = -99.733222 kcal Electronic energy + Delta-G solvation = -30433.022543 eV Core-core repulsion = 26267.621095 eV Total energy + Delta-G solvation = -4165.401448 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.89127 -39.21490 -38.44774 -37.22687 -36.43965 -34.17651 -33.75220 -31.61108 -31.36209 -30.91691 -30.45652 -27.15641 -26.37492 -24.31991 -24.09603 -23.76622 -22.96148 -20.78608 -20.56065 -19.45724 -19.13797 -17.96040 -17.43717 -16.62334 -16.48613 -16.32682 -16.01282 -15.72923 -15.44165 -15.22478 -14.86364 -14.61373 -14.45192 -14.02255 -13.83556 -13.71097 -13.49207 -13.38260 -12.89890 -12.77553 -12.59740 -12.53775 -12.33277 -11.94619 -11.81544 -11.72080 -11.70643 -11.47505 -11.41758 -11.12398 -11.08898 -10.91074 -10.71584 -10.42659 -10.41262 -10.25848 -9.99604 -9.57177 -9.55412 -9.26382 -8.52920 -8.18429 -8.00976 -6.46030 -3.87015 2.34226 2.86950 3.14563 3.23862 3.29657 3.32638 3.57566 3.84541 3.99195 4.13742 4.23986 4.27872 4.40941 4.45284 4.58346 4.64996 4.77404 4.87476 4.93280 5.11336 5.13393 5.14453 5.20403 5.23190 5.24100 5.31337 5.37779 5.43415 5.47566 5.52930 5.63428 5.66559 5.69445 5.71763 5.72882 5.79810 5.83121 5.90817 5.93767 6.13017 6.20851 6.31649 6.91712 7.09535 7.23638 7.50948 7.51327 8.01290 8.01453 8.56159 9.13381 9.49160 10.00278 10.71538 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010827 B = 0.002821 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.401960 B = 9924.340349 C =11193.035295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.072 3.928 3 H 0.048 0.952 4 C 0.118 3.882 5 N -0.726 5.726 6 C 0.549 3.451 7 O -0.538 6.538 8 C -0.185 4.185 9 H 0.131 0.869 10 C -0.134 4.134 11 C -0.106 4.106 12 C -0.118 4.118 13 C 0.060 3.940 14 O -0.380 6.380 15 C 0.064 3.936 16 C -0.121 4.121 17 N -0.663 5.663 18 C 0.049 3.951 19 C 0.439 3.561 20 O -0.583 6.583 21 N -0.562 5.562 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.283 1.283 29 H -0.269 1.269 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.399 0.601 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.054 0.946 42 H 0.095 0.905 43 H 0.050 0.950 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.347 0.653 47 H 0.043 0.957 48 H 0.088 0.912 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.321 2.958 -19.996 20.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.039 4.039 3 H 0.066 0.934 4 C -0.006 4.006 5 N -0.379 5.379 6 C 0.336 3.664 7 O -0.415 6.415 8 C -0.206 4.206 9 H 0.149 0.851 10 C -0.171 4.171 11 C -0.106 4.106 12 C -0.155 4.155 13 C -0.017 4.017 14 O -0.299 6.299 15 C -0.013 4.013 16 C -0.159 4.159 17 N -0.298 5.298 18 C -0.083 4.083 19 C 0.224 3.776 20 O -0.467 6.467 21 N -0.198 5.198 22 C -0.430 4.430 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.234 0.766 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.116 0.884 41 H 0.072 0.928 42 H 0.113 0.887 43 H 0.068 0.932 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.168 0.832 47 H 0.061 0.939 48 H 0.106 0.894 49 H 0.225 0.775 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.526 1.889 -20.398 20.980 hybrid contribution 0.955 0.531 1.187 1.613 sum 5.481 2.421 -19.211 20.124 Atomic orbital electron populations 1.21735 0.93326 1.02997 1.01573 1.21811 0.97194 0.95863 0.89003 0.93381 1.21629 0.79171 1.02131 0.97644 1.46047 1.08050 1.59795 1.23992 1.19543 0.88177 0.76886 0.81837 1.90701 1.69945 1.47242 1.33634 1.22467 0.91287 1.05149 1.01674 0.85086 1.23037 1.01388 0.98305 0.94367 1.21532 0.97050 0.89758 1.02299 1.21870 0.94968 0.99912 0.98781 1.22643 0.98033 0.87192 0.93815 1.87889 1.31531 1.35001 1.75473 1.22582 0.85046 0.98780 0.94853 1.21867 1.00337 0.94577 0.99107 1.60118 1.34777 1.32255 1.02688 1.21756 1.01520 0.93757 0.91297 1.19782 0.85148 0.88213 0.84459 1.90532 1.55373 1.16080 1.84747 1.41858 1.57622 1.12414 1.07934 1.19697 1.40071 0.96451 0.86775 0.87923 1.25263 0.97578 0.95781 0.99241 1.69612 1.48469 1.08858 1.27251 0.85861 0.78769 0.79549 0.80148 1.20399 1.20889 1.19380 0.91491 0.91940 0.92490 0.90842 0.90224 0.76607 0.87698 0.87576 0.90239 0.90079 0.88442 0.92762 0.88686 0.93204 0.90053 0.90623 0.83218 0.93902 0.89374 0.77467 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.41 37.16 0.35 -1.10 16 2 C 0.07 0.80 2.81 -67.71 -0.19 0.61 16 3 H 0.05 0.49 7.80 -51.93 -0.40 0.09 16 4 C 0.12 1.28 5.31 -4.04 -0.02 1.26 16 5 N -0.73 -7.78 4.86 -60.30 -0.29 -8.08 16 6 C 0.55 6.56 5.84 -10.99 -0.06 6.50 16 7 O -0.54 -8.23 16.57 5.56 0.09 -8.14 16 8 C -0.18 -1.77 5.87 -91.89 -0.54 -2.31 16 9 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 10 C -0.13 -1.14 9.52 -26.80 -0.26 -1.40 16 11 C -0.11 -0.88 2.03 -154.49 -0.31 -1.19 16 12 C -0.12 -0.87 5.92 -26.43 -0.16 -1.02 16 13 C 0.06 0.51 6.84 37.33 0.26 0.77 16 14 O -0.38 -3.96 10.69 -35.23 -0.38 -4.33 16 15 C 0.06 0.57 6.84 37.32 0.26 0.83 16 16 C -0.12 -1.04 5.59 -26.44 -0.15 -1.19 16 17 N -0.66 -9.92 5.93 -108.00 -0.64 -10.56 16 18 C 0.05 0.81 5.97 -4.98 -0.03 0.78 16 19 C 0.44 9.98 7.82 -10.98 -0.09 9.90 16 20 O -0.58 -15.40 15.78 5.55 0.09 -15.32 16 21 N -0.56 -13.83 5.29 -10.96 -0.06 -13.89 16 22 C -0.30 -8.22 9.68 -14.94 -0.14 -8.36 16 23 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.06 13.05 55.50 0.72 -23.34 16 26 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 27 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 29 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.40 4.00 7.09 -40.82 -0.29 3.71 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.11 1.02 7.90 -51.93 -0.41 0.61 16 38 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 43 H 0.05 0.44 7.72 -51.93 -0.40 0.04 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 0.72 6.83 -51.93 -0.35 0.37 16 46 H 0.35 5.36 6.42 -39.29 -0.25 5.10 16 47 H 0.04 0.62 8.05 -51.93 -0.42 0.21 16 48 H 0.09 1.36 7.44 -51.93 -0.39 0.98 16 49 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 50 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 405.69 15.07 6.11 6.11 Total: -1.00 -32.72 405.69 -8.76 -41.49 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: -8.21 Total: 15.76 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -1.18 Total: 4.59 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.27 Total: -55.87 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.20 Total: -27.79 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.72 -8.76 -41.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266999016.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.245 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds