Wall clock time and date at job start Tue Mar 31 2020 23:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47307 * 2 1 4 4 C 1.53001 * 109.47195 * 239.99812 * 2 1 3 5 5 N 1.46498 * 109.47302 * 185.00345 * 4 2 1 6 6 C 1.34777 * 120.00124 * 179.97438 * 5 4 2 7 7 O 1.21278 * 119.99640 * 359.71909 * 6 5 4 8 8 C 1.50694 * 120.00043 * 179.72372 * 6 5 4 9 9 H 1.08998 * 115.55730 * 60.06687 * 8 6 5 10 10 C 1.53056 * 117.50508 * 205.77006 * 8 6 5 11 11 C 1.52727 * 117.50777 * 274.35588 * 8 6 5 12 12 C 1.53248 * 117.83350 * 144.67263 * 11 8 6 13 13 C 1.53333 * 108.48232 * 265.32151 * 12 11 8 14 14 O 1.42867 * 109.31946 * 306.01771 * 13 12 11 15 15 C 1.42873 * 114.51556 * 64.36567 * 14 13 12 16 16 C 1.53247 * 117.83116 * 0.39795 * 11 8 6 17 17 N 1.46907 * 109.47068 * 119.99650 * 2 1 3 18 18 C 1.46890 * 111.00077 * 274.99913 * 17 2 1 19 19 C 1.50708 * 109.47024 * 179.97438 * 18 17 2 20 20 O 1.21294 * 119.99976 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00133 * 180.02562 * 19 18 17 22 22 C 1.37090 * 120.00373 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99631 * 0.02562 * 22 21 19 24 24 C 1.38949 * 120.00511 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99544 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00290 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47552 * 89.99446 * 26 24 22 28 28 H 1.48500 * 109.47136 * 210.00160 * 26 24 22 29 29 H 1.48503 * 109.46970 * 329.99485 * 26 24 22 30 30 H 1.08994 * 109.47611 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46682 * 300.00194 * 1 2 3 32 32 H 1.08999 * 109.46762 * 59.99537 * 1 2 3 33 33 H 1.09000 * 109.46869 * 64.99963 * 4 2 1 34 34 H 1.09005 * 109.46774 * 305.00250 * 4 2 1 35 35 H 0.97002 * 119.99822 * 359.72554 * 5 4 2 36 36 H 1.09000 * 117.50701 * 214.93250 * 10 8 6 37 37 H 1.08999 * 117.50942 * 359.97438 * 10 8 6 38 38 H 1.09001 * 109.63550 * 25.01959 * 12 11 8 39 39 H 1.08994 * 109.63332 * 145.62206 * 12 11 8 40 40 H 1.08995 * 109.49191 * 186.06612 * 13 12 11 41 41 H 1.08996 * 109.49699 * 65.97198 * 13 12 11 42 42 H 1.09008 * 109.49719 * 175.67668 * 15 14 13 43 43 H 1.09000 * 109.49850 * 55.59111 * 15 14 13 44 44 H 1.09000 * 109.63176 * 214.37988 * 16 11 8 45 45 H 1.08996 * 109.63323 * 334.97526 * 16 11 8 46 46 H 1.00900 * 110.99571 * 151.04049 * 17 2 1 47 47 H 1.08994 * 109.47536 * 299.99737 * 18 17 2 48 48 H 1.08995 * 109.47345 * 60.00331 * 18 17 2 49 49 H 0.97000 * 119.99902 * 359.97438 * 21 19 18 50 50 H 0.97005 * 119.99796 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1730 -1.4293 -2.1906 7 8 3.5694 -1.8892 -3.1367 8 6 5.6753 -1.5320 -2.1332 9 1 6.0771 -2.0766 -1.2788 10 6 6.4273 -1.6464 -3.4614 11 6 6.4839 -0.3476 -2.6583 12 6 7.7953 -0.0035 -1.9439 13 6 7.5095 1.0824 -0.8998 14 8 6.8605 2.1870 -1.5320 15 6 5.5696 1.8892 -2.0669 16 6 5.7130 0.8626 -3.1966 17 7 2.0197 -0.6925 1.1995 18 6 2.0825 0.2226 2.3469 19 6 2.5873 -0.5218 3.5561 20 8 2.8677 -1.6988 3.4703 21 7 2.7273 0.1202 4.7328 22 6 3.1861 -0.5570 5.8329 23 1 3.4357 -1.6050 5.7565 24 6 3.3299 0.1048 7.0462 25 7 3.0266 1.3801 7.1390 26 14 3.9557 -0.8179 8.5450 27 1 5.4366 -0.7239 8.6016 28 1 3.3743 -0.2191 9.7733 29 1 3.5534 -2.2444 8.4517 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.7516 -0.1584 -2.1369 34 1 1.6053 -1.7199 -1.2951 35 1 3.9827 -0.4591 -0.4336 36 1 7.3240 -2.2657 -3.4805 37 1 5.8353 -1.6478 -4.3766 38 1 8.1875 -0.8924 -1.4499 39 1 8.5207 0.3667 -2.6683 40 1 8.4475 1.4167 -0.4566 41 1 6.8628 0.6775 -0.1214 42 1 5.1190 2.8010 -2.4590 43 1 4.9359 1.4788 -1.2807 44 1 6.2617 1.3063 -4.0274 45 1 4.7253 0.5475 -3.5329 46 1 2.9173 -1.1205 1.0288 47 1 2.7589 1.0462 2.1182 48 1 1.0871 0.6163 2.5525 49 1 2.5034 1.0616 4.8013 50 1 3.1273 1.8422 7.9859 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266999016.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:45 Heat of formation + Delta-G solvation = -124.306496 kcal Electronic energy + Delta-G solvation = -30434.088120 eV Core-core repulsion = 26267.621095 eV Total energy + Delta-G solvation = -4166.467025 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.70120 -40.30747 -39.87563 -38.34135 -37.29148 -35.97973 -34.97667 -33.27715 -32.27568 -32.07724 -31.16689 -28.21850 -27.79194 -25.82589 -24.82583 -24.69210 -23.66406 -21.73043 -21.43319 -21.11474 -20.04263 -19.86218 -18.39000 -17.75912 -17.38127 -17.08250 -17.04643 -16.86000 -16.77625 -16.35836 -16.01434 -15.86754 -15.65312 -15.41880 -15.06272 -14.71182 -14.40821 -14.29130 -14.11633 -13.74439 -13.54145 -13.47727 -13.46724 -13.28884 -13.05395 -12.94274 -12.82562 -12.60579 -12.40826 -12.34495 -12.14211 -12.12569 -11.90790 -11.74124 -11.50292 -11.42343 -11.17091 -10.85817 -10.34846 -10.30985 -10.16519 -10.01089 -9.39180 -8.46537 -5.94963 1.37948 1.42445 1.43528 1.54627 2.01187 2.05606 2.28923 2.60089 2.85859 2.91366 3.21097 3.42115 3.47681 3.59429 3.66509 3.72277 3.78629 4.00135 4.00656 4.14307 4.21771 4.24438 4.37346 4.44072 4.45548 4.46471 4.58153 4.58781 4.60548 4.70106 4.73787 4.78217 4.82780 4.88789 4.91747 4.99763 5.03480 5.06409 5.16246 5.19381 5.26510 5.41353 5.43850 5.87161 6.08225 6.24158 6.32720 6.34415 6.60251 7.09668 7.13135 7.56675 8.11878 8.70657 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010827 B = 0.002821 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.401960 B = 9924.340349 C =11193.035295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.079 3.921 3 H 0.069 0.931 4 C 0.123 3.877 5 N -0.719 5.719 6 C 0.548 3.452 7 O -0.577 6.577 8 C -0.196 4.196 9 H 0.141 0.859 10 C -0.130 4.130 11 C -0.096 4.096 12 C -0.112 4.112 13 C 0.054 3.946 14 O -0.398 6.398 15 C 0.063 3.937 16 C -0.118 4.118 17 N -0.679 5.679 18 C 0.065 3.935 19 C 0.437 3.563 20 O -0.623 6.623 21 N -0.571 5.571 22 C -0.333 4.333 23 H 0.078 0.922 24 C -0.011 4.011 25 N -0.919 5.919 26 Si 0.990 3.010 27 H -0.270 1.270 28 H -0.272 1.272 29 H -0.274 1.274 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.404 0.596 36 H 0.125 0.875 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.049 0.951 42 H 0.104 0.896 43 H 0.048 0.952 44 H 0.086 0.914 45 H 0.064 0.936 46 H 0.342 0.658 47 H 0.071 0.929 48 H 0.105 0.895 49 H 0.397 0.603 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.982 3.965 -20.239 21.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 H 0.086 0.914 4 C -0.001 4.001 5 N -0.371 5.371 6 C 0.336 3.664 7 O -0.456 6.456 8 C -0.217 4.217 9 H 0.158 0.842 10 C -0.168 4.168 11 C -0.097 4.097 12 C -0.149 4.149 13 C -0.023 4.023 14 O -0.317 6.317 15 C -0.014 4.014 16 C -0.155 4.155 17 N -0.314 5.314 18 C -0.068 4.068 19 C 0.224 3.776 20 O -0.510 6.510 21 N -0.208 5.208 22 C -0.463 4.463 23 H 0.096 0.904 24 C -0.211 4.211 25 N -0.560 5.560 26 Si 0.814 3.186 27 H -0.195 1.195 28 H -0.197 1.197 29 H -0.199 1.199 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.240 0.760 36 H 0.143 0.857 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.067 0.933 42 H 0.122 0.878 43 H 0.066 0.934 44 H 0.105 0.895 45 H 0.082 0.918 46 H 0.162 0.838 47 H 0.089 0.911 48 H 0.123 0.877 49 H 0.230 0.770 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.179 2.935 -20.639 21.480 hybrid contribution 0.714 0.213 1.207 1.419 sum 5.893 3.149 -19.431 20.548 Atomic orbital electron populations 1.21748 0.92617 1.02507 1.02666 1.21856 0.97581 0.96387 0.87249 0.91355 1.21570 0.79185 1.01291 0.98038 1.46019 1.08054 1.59223 1.23808 1.19942 0.89161 0.76072 0.81271 1.90679 1.70907 1.48965 1.35097 1.22497 0.89791 1.06661 1.02736 0.84177 1.23100 1.01617 0.98753 0.93298 1.21572 0.97074 0.89341 1.01703 1.21865 0.94404 1.00082 0.98589 1.22781 0.98278 0.87203 0.94013 1.87865 1.32087 1.36040 1.75691 1.22645 0.84660 0.99276 0.94797 1.21821 0.99834 0.94672 0.99223 1.60117 1.34723 1.32877 1.03714 1.21608 1.02561 0.93632 0.88964 1.20869 0.83269 0.87974 0.85449 1.90503 1.56679 1.18202 1.85614 1.41914 1.58203 1.12559 1.08160 1.19642 1.42149 0.95921 0.88574 0.90390 1.25996 0.97227 0.96592 1.01280 1.69667 1.48518 1.09639 1.28153 0.84967 0.78563 0.78015 0.77054 1.19510 1.19665 1.19917 0.92816 0.92240 0.89989 0.89591 0.92075 0.76038 0.85718 0.88841 0.88888 0.89317 0.87423 0.93292 0.87786 0.93401 0.89537 0.91765 0.83756 0.91101 0.87740 0.76959 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.41 71.98 0.68 -1.94 16 2 C 0.08 1.61 2.81 44.91 0.13 1.73 16 3 H 0.07 1.18 7.80 -2.39 -0.02 1.16 16 4 C 0.12 2.55 5.31 86.38 0.46 3.01 16 5 N -0.72 -14.91 4.86 -463.07 -2.25 -17.16 16 6 C 0.55 12.94 5.84 87.66 0.51 13.45 16 7 O -0.58 -17.78 16.57 -3.02 -0.05 -17.83 16 8 C -0.20 -3.58 5.87 -11.61 -0.07 -3.64 16 9 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 10 C -0.13 -2.08 9.52 30.55 0.29 -1.78 16 11 C -0.10 -1.47 2.03 -52.17 -0.11 -1.58 16 12 C -0.11 -1.42 5.92 30.79 0.18 -1.24 16 13 C 0.05 0.84 6.84 72.09 0.49 1.33 16 14 O -0.40 -7.72 10.69 -148.98 -1.59 -9.31 16 15 C 0.06 1.03 6.84 72.09 0.49 1.53 16 16 C -0.12 -1.89 5.59 30.78 0.17 -1.72 16 17 N -0.68 -19.54 5.93 -495.59 -2.94 -22.48 16 18 C 0.06 2.03 5.97 85.56 0.51 2.54 16 19 C 0.44 19.89 7.82 87.66 0.69 20.57 16 20 O -0.62 -33.52 15.78 -3.07 -0.05 -33.57 16 21 N -0.57 -28.31 5.29 -306.98 -1.62 -29.93 16 22 C -0.33 -18.52 9.68 84.04 0.81 -17.70 16 23 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 24 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 25 N -0.92 -48.54 13.05 21.66 0.28 -48.26 16 26 Si 0.99 42.17 29.55 68.60 2.03 44.20 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 28 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 29 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.18 7.45 -2.38 -0.02 1.16 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.40 7.70 7.09 -92.71 -0.66 7.04 16 36 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.09 1.76 7.90 -2.39 -0.02 1.74 16 38 H 0.09 0.95 8.08 -2.39 -0.02 0.93 16 39 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 43 H 0.05 0.79 7.72 -2.39 -0.02 0.77 16 44 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.06 1.19 6.83 -2.39 -0.02 1.17 16 46 H 0.34 10.36 6.42 -89.69 -0.58 9.78 16 47 H 0.07 1.87 8.05 -2.39 -0.02 1.85 16 48 H 0.10 3.00 7.44 -2.39 -0.02 2.98 16 49 H 0.40 18.61 7.90 -92.71 -0.73 17.88 16 50 H 0.28 13.74 8.31 -92.70 -0.77 12.97 16 Total: -1.00 -71.12 405.69 -1.48 -72.59 By element: Atomic # 1 Polarization: 48.29 SS G_CDS: -1.00 Total: 47.29 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 5.71 Total: 14.45 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -6.53 Total: -117.83 kcal Atomic # 8 Polarization: -59.02 SS G_CDS: -1.69 Total: -60.71 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -71.12 -1.48 -72.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266999016.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.715 kcal (2) G-P(sol) polarization free energy of solvation -71.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds