Wall clock time and date at job start Tue Mar 31 2020 22:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 84.72207 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31611 * 120.00081 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99814 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47483 * 90.00178 * 9 7 5 11 11 H 1.48498 * 109.47011 * 210.00042 * 9 7 5 12 12 H 1.48502 * 109.47495 * 329.99664 * 9 7 5 13 13 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 14 14 C 1.53038 * 109.45877 * 60.07000 * 13 2 1 15 15 C 1.53198 * 109.31177 * 178.61246 * 14 13 2 16 16 N 1.46922 * 108.77046 * 54.63565 * 15 14 13 17 17 C 1.34782 * 120.62939 * 126.41725 * 16 15 14 18 18 O 1.21280 * 119.99689 * 179.97438 * 17 16 15 19 19 C 1.50700 * 119.99875 * 359.97365 * 17 16 15 20 20 N 1.46504 * 109.46788 * 180.02562 * 19 17 16 21 21 C 1.46093 * 118.72325 * 269.72585 * 20 19 17 22 22 C 1.53193 * 109.82189 * 161.46522 * 21 20 19 23 23 O 1.43240 * 108.53732 * 49.51946 * 22 21 20 24 24 C 1.42970 * 112.98677 * 291.48303 * 23 22 21 25 25 C 1.33862 * 118.73131 * 90.00079 * 20 19 17 26 26 O 1.21280 * 118.83746 * 1.87664 * 25 20 19 27 27 C 1.46923 * 118.74066 * 306.38465 * 16 15 14 28 28 C 1.53031 * 109.46199 * 299.99863 * 13 2 1 29 29 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 31 31 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 32 32 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 33 33 H 0.97008 * 120.00329 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.45746 * 180.02562 * 13 2 1 35 35 H 1.09006 * 109.49860 * 298.56209 * 14 13 2 36 36 H 1.08999 * 109.50362 * 58.65963 * 14 13 2 37 37 H 1.09002 * 109.58382 * 294.84519 * 15 14 13 38 38 H 1.08997 * 109.70057 * 174.48791 * 15 14 13 39 39 H 1.09002 * 109.46539 * 299.99817 * 19 17 16 40 40 H 1.08997 * 109.47538 * 60.00150 * 19 17 16 41 41 H 1.08998 * 109.39841 * 281.78228 * 21 20 19 42 42 H 1.08995 * 109.39531 * 41.50815 * 21 20 19 43 43 H 1.09001 * 109.79399 * 289.72762 * 22 21 20 44 44 H 1.09004 * 109.67578 * 169.23915 * 22 21 20 45 45 H 1.09002 * 109.41148 * 289.49677 * 24 23 22 46 46 H 1.08996 * 109.41521 * 169.70638 * 24 23 22 47 47 H 1.09005 * 109.58831 * 293.82980 * 27 16 15 48 48 H 1.09001 * 109.58907 * 173.40185 * 27 16 15 49 49 H 1.09000 * 109.50066 * 301.34096 * 28 13 2 50 50 H 1.09007 * 109.49775 * 61.40191 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1437 -0.0088 -2.3771 6 1 1.8868 1.0391 -2.4256 7 6 2.6010 -0.6645 -3.5120 8 7 2.7220 -0.0091 -4.6468 9 14 3.0446 -2.4771 -3.4283 10 1 1.8455 -3.2952 -3.7415 11 1 4.1155 -2.7706 -4.4143 12 1 3.5256 -2.8065 -2.0625 13 6 2.0400 -0.7213 1.2493 14 6 1.5311 -2.1646 1.2481 15 6 2.0720 -2.8935 2.4822 16 7 1.7086 -2.1265 3.6814 17 6 1.0559 -2.7167 4.7024 18 8 0.7619 -2.0727 5.6871 19 6 0.6917 -4.1766 4.6202 20 7 -0.0064 -4.5754 5.8450 21 6 0.7792 -5.0820 6.9677 22 6 -0.0444 -5.0004 8.2568 23 8 -1.3294 -5.5847 8.0140 24 6 -2.1338 -4.8125 7.1191 25 6 -1.3399 -4.4666 5.8901 26 8 -1.9285 -4.0746 4.9048 27 6 2.0706 -0.7041 3.7469 28 6 1.5298 0.0003 2.4986 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 2.2490 -1.6318 -1.1527 33 1 3.0419 -0.4672 -5.4398 34 1 3.1300 -0.7208 1.2493 35 1 0.4414 -2.1662 1.2732 36 1 1.8755 -2.6711 0.3464 37 1 3.1571 -2.9723 2.4136 38 1 1.6361 -3.8908 2.5403 39 1 0.0407 -4.3408 3.7615 40 1 1.5980 -4.7716 4.5082 41 1 1.0571 -6.1185 6.7765 42 1 1.6818 -4.4812 7.0782 43 1 -0.1663 -3.9581 8.5516 44 1 0.4623 -5.5483 9.0514 45 1 -2.4503 -3.8955 7.6161 46 1 -3.0127 -5.3898 6.8322 47 1 3.1555 -0.6043 3.7815 48 1 1.6318 -0.2559 4.6383 49 1 1.8731 1.0347 2.4871 50 1 0.4400 -0.0212 2.5116 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267486496.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:10 Heat of formation + Delta-G solvation = -87.071210 kcal Electronic energy + Delta-G solvation = -30878.026959 eV Core-core repulsion = 26713.174577 eV Total energy + Delta-G solvation = -4164.852382 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.27847 -40.11800 -38.27710 -37.96312 -35.80133 -35.48799 -33.04946 -31.64088 -30.81454 -30.72012 -29.55199 -28.58487 -26.61109 -25.26558 -24.36218 -23.53298 -23.26649 -21.53658 -20.03827 -19.35229 -18.71227 -18.14013 -17.89360 -17.43762 -17.30261 -16.35472 -15.93397 -15.90393 -15.28769 -14.95806 -14.76200 -14.72773 -14.63190 -14.11422 -14.00942 -13.83978 -13.58007 -13.45722 -13.25006 -13.12723 -12.74242 -12.44803 -12.27715 -12.20434 -12.08618 -11.79913 -11.70544 -11.53568 -11.33000 -10.99760 -10.94207 -10.70797 -10.47369 -10.36665 -10.24865 -10.11936 -9.85359 -9.79885 -9.56485 -9.12394 -8.94776 -8.75314 -7.27199 -5.77341 -3.12346 2.03804 2.31122 2.39944 2.91000 3.24587 3.32921 3.36226 3.42744 3.86026 4.21067 4.25506 4.50985 4.57265 4.58969 4.67506 4.72562 4.84289 4.88916 4.92695 4.93611 5.02593 5.05808 5.10651 5.21640 5.24070 5.29777 5.44298 5.50279 5.57334 5.65695 5.71682 5.83908 5.84418 5.97487 6.06714 6.14079 6.21676 6.25939 6.32364 6.43188 6.53433 6.60414 6.81765 6.87759 7.07256 7.20556 7.63955 7.95491 8.00139 8.41951 9.20876 9.93287 10.13314 11.41316 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020798 B = 0.002466 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.942760 B =11352.193797 C =11680.486353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.183 3.817 3 H 0.055 0.945 4 N -0.749 5.749 5 C -0.240 4.240 6 H 0.089 0.911 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.883 3.117 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.278 1.278 13 C -0.093 4.093 14 C -0.132 4.132 15 C 0.104 3.896 16 N -0.605 5.605 17 C 0.502 3.498 18 O -0.541 6.541 19 C 0.089 3.911 20 N -0.588 5.588 21 C 0.083 3.917 22 C 0.044 3.956 23 O -0.371 6.371 24 C 0.053 3.947 25 C 0.493 3.507 26 O -0.535 6.535 27 C 0.113 3.887 28 C -0.128 4.128 29 H 0.047 0.953 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.359 0.641 33 H 0.259 0.741 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.119 0.881 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.117 0.883 45 H 0.093 0.907 46 H 0.132 0.868 47 H 0.067 0.933 48 H 0.088 0.912 49 H 0.076 0.924 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.491 -11.823 27.743 30.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.074 3.926 3 H 0.073 0.927 4 N -0.392 5.392 5 C -0.370 4.370 6 H 0.107 0.893 7 C -0.193 4.193 8 N -0.583 5.583 9 Si 0.714 3.286 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.112 4.112 14 C -0.171 4.171 15 C -0.018 4.018 16 N -0.339 5.339 17 C 0.289 3.711 18 O -0.418 6.418 19 C -0.037 4.037 20 N -0.322 5.322 21 C -0.040 4.040 22 C -0.033 4.033 23 O -0.289 6.289 24 C -0.027 4.027 25 C 0.281 3.719 26 O -0.411 6.411 27 C -0.009 4.009 28 C -0.167 4.167 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.193 0.807 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.137 0.863 40 H 0.127 0.873 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.135 0.865 45 H 0.111 0.889 46 H 0.150 0.850 47 H 0.085 0.915 48 H 0.107 0.893 49 H 0.095 0.905 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.017 -11.282 27.668 30.032 hybrid contribution 0.606 -1.013 -0.464 1.268 sum -2.411 -12.295 27.205 29.951 Atomic orbital electron populations 1.22503 0.99019 1.00909 1.00338 1.20159 0.91950 0.95456 0.85003 0.92717 1.42845 1.79762 1.09508 1.07106 1.19088 1.36762 0.95616 0.85506 0.89271 1.24669 1.01663 0.97418 0.95568 1.69696 1.52984 1.35522 1.00121 0.86575 0.78123 0.87042 0.76908 1.21129 1.21807 1.20401 1.21423 1.00409 0.94337 0.95032 1.22017 1.01849 0.96476 0.96714 1.21884 1.00530 0.94785 0.84624 1.48145 1.57029 1.11243 1.17469 1.20991 0.77329 0.89976 0.82804 1.90660 1.53945 1.65495 1.31746 1.21437 0.99381 0.92987 0.89891 1.47056 1.06178 1.63778 1.15146 1.22219 0.95612 1.00120 0.86036 1.23042 0.83899 1.00145 0.96209 1.88182 1.27207 1.48489 1.65046 1.22829 0.94265 0.98671 0.86898 1.21011 0.82441 0.77584 0.90897 1.90777 1.68655 1.46138 1.35575 1.21643 0.99698 0.79884 0.99666 1.22002 1.01733 0.99431 0.93507 0.93445 0.94073 0.92607 0.80686 0.93112 0.90908 0.90781 0.90307 0.90871 0.90160 0.86296 0.87328 0.90328 0.89495 0.91336 0.86539 0.88911 0.85035 0.91498 0.89334 0.90505 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 8.79 37.16 0.33 -2.61 16 2 C 0.18 3.35 2.72 -67.93 -0.18 3.17 16 3 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 4 N -0.75 -16.95 4.85 -53.43 -0.26 -17.21 16 5 C -0.24 -6.63 10.41 -15.06 -0.16 -6.79 16 6 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 7 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 8 N -0.94 -29.21 13.97 55.49 0.78 -28.43 16 9 Si 0.88 21.64 27.74 -169.99 -4.71 16.93 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 13 C -0.09 -1.32 2.14 -90.58 -0.19 -1.52 16 14 C -0.13 -1.74 4.81 -26.61 -0.13 -1.86 16 15 C 0.10 1.06 6.34 -3.71 -0.02 1.03 16 16 N -0.60 -6.89 2.97 -172.77 -0.51 -7.40 16 17 C 0.50 6.17 7.76 -10.98 -0.09 6.08 16 18 O -0.54 -8.30 15.84 5.56 0.09 -8.21 16 19 C 0.09 0.85 4.14 -5.19 -0.02 0.83 16 20 N -0.59 -5.69 2.32 -175.68 -0.41 -6.10 16 21 C 0.08 0.51 6.63 -4.16 -0.03 0.49 16 22 C 0.04 0.25 6.91 37.26 0.26 0.50 16 23 O -0.37 -2.87 10.85 -35.23 -0.38 -3.25 16 24 C 0.05 0.43 6.98 35.84 0.25 0.68 16 25 C 0.49 5.67 7.58 -11.56 -0.09 5.58 16 26 O -0.53 -8.22 16.36 5.56 0.09 -8.13 16 27 C 0.11 1.30 6.43 -3.71 -0.02 1.28 16 28 C -0.13 -1.59 4.96 -26.62 -0.13 -1.72 16 29 H 0.05 0.81 6.46 -51.93 -0.34 0.48 16 30 H 0.04 0.62 6.46 -51.93 -0.34 0.29 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.36 7.89 3.90 -40.82 -0.16 7.74 16 33 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.03 6.51 -51.93 -0.34 0.69 16 36 H 0.08 1.13 6.46 -51.93 -0.34 0.79 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.64 5.93 -51.93 -0.31 0.33 16 39 H 0.12 1.25 6.79 -51.93 -0.35 0.89 16 40 H 0.11 0.66 7.83 -51.93 -0.41 0.26 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 0.49 8.13 -51.93 -0.42 0.07 16 43 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 44 H 0.12 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.13 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.09 1.10 7.01 -51.93 -0.36 0.74 16 49 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 50 H 0.07 0.96 6.51 -51.93 -0.34 0.63 16 LS Contribution 385.54 15.07 5.81 5.81 Total: -1.00 -36.46 385.54 -7.77 -44.23 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -7.93 Total: 6.65 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -0.33 Total: 5.13 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -0.41 Total: -59.15 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.20 Total: -19.59 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.93 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.46 -7.77 -44.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267486496.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.837 kcal (2) G-P(sol) polarization free energy of solvation -36.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds