Wall clock time and date at job start Tue Mar 31 2020 22:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 84.72207 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31611 * 120.00081 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99814 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47483 * 90.00178 * 9 7 5 11 11 H 1.48498 * 109.47011 * 210.00042 * 9 7 5 12 12 H 1.48502 * 109.47495 * 329.99664 * 9 7 5 13 13 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 14 14 C 1.53038 * 109.45877 * 60.07000 * 13 2 1 15 15 C 1.53198 * 109.31177 * 178.61246 * 14 13 2 16 16 N 1.46922 * 108.77046 * 54.63565 * 15 14 13 17 17 C 1.34782 * 120.62939 * 126.41725 * 16 15 14 18 18 O 1.21280 * 119.99689 * 179.97438 * 17 16 15 19 19 C 1.50700 * 119.99875 * 359.97365 * 17 16 15 20 20 N 1.46504 * 109.46788 * 180.02562 * 19 17 16 21 21 C 1.46093 * 118.72325 * 269.72585 * 20 19 17 22 22 C 1.53193 * 109.82189 * 161.46522 * 21 20 19 23 23 O 1.43240 * 108.53732 * 49.51946 * 22 21 20 24 24 C 1.42970 * 112.98677 * 291.48303 * 23 22 21 25 25 C 1.33862 * 118.73131 * 90.00079 * 20 19 17 26 26 O 1.21280 * 118.83746 * 1.87664 * 25 20 19 27 27 C 1.46923 * 118.74066 * 306.38465 * 16 15 14 28 28 C 1.53031 * 109.46199 * 299.99863 * 13 2 1 29 29 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 31 31 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 32 32 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 33 33 H 0.97008 * 120.00329 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.45746 * 180.02562 * 13 2 1 35 35 H 1.09006 * 109.49860 * 298.56209 * 14 13 2 36 36 H 1.08999 * 109.50362 * 58.65963 * 14 13 2 37 37 H 1.09002 * 109.58382 * 294.84519 * 15 14 13 38 38 H 1.08997 * 109.70057 * 174.48791 * 15 14 13 39 39 H 1.09002 * 109.46539 * 299.99817 * 19 17 16 40 40 H 1.08997 * 109.47538 * 60.00150 * 19 17 16 41 41 H 1.08998 * 109.39841 * 281.78228 * 21 20 19 42 42 H 1.08995 * 109.39531 * 41.50815 * 21 20 19 43 43 H 1.09001 * 109.79399 * 289.72762 * 22 21 20 44 44 H 1.09004 * 109.67578 * 169.23915 * 22 21 20 45 45 H 1.09002 * 109.41148 * 289.49677 * 24 23 22 46 46 H 1.08996 * 109.41521 * 169.70638 * 24 23 22 47 47 H 1.09005 * 109.58831 * 293.82980 * 27 16 15 48 48 H 1.09001 * 109.58907 * 173.40185 * 27 16 15 49 49 H 1.09000 * 109.50066 * 301.34096 * 28 13 2 50 50 H 1.09007 * 109.49775 * 61.40191 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1437 -0.0088 -2.3771 6 1 1.8868 1.0391 -2.4256 7 6 2.6010 -0.6645 -3.5120 8 7 2.7220 -0.0091 -4.6468 9 14 3.0446 -2.4771 -3.4283 10 1 1.8455 -3.2952 -3.7415 11 1 4.1155 -2.7706 -4.4143 12 1 3.5256 -2.8065 -2.0625 13 6 2.0400 -0.7213 1.2493 14 6 1.5311 -2.1646 1.2481 15 6 2.0720 -2.8935 2.4822 16 7 1.7086 -2.1265 3.6814 17 6 1.0559 -2.7167 4.7024 18 8 0.7619 -2.0727 5.6871 19 6 0.6917 -4.1766 4.6202 20 7 -0.0064 -4.5754 5.8450 21 6 0.7792 -5.0820 6.9677 22 6 -0.0444 -5.0004 8.2568 23 8 -1.3294 -5.5847 8.0140 24 6 -2.1338 -4.8125 7.1191 25 6 -1.3399 -4.4666 5.8901 26 8 -1.9285 -4.0746 4.9048 27 6 2.0706 -0.7041 3.7469 28 6 1.5298 0.0003 2.4986 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 2.2490 -1.6318 -1.1527 33 1 3.0419 -0.4672 -5.4398 34 1 3.1300 -0.7208 1.2493 35 1 0.4414 -2.1662 1.2732 36 1 1.8755 -2.6711 0.3464 37 1 3.1571 -2.9723 2.4136 38 1 1.6361 -3.8908 2.5403 39 1 0.0407 -4.3408 3.7615 40 1 1.5980 -4.7716 4.5082 41 1 1.0571 -6.1185 6.7765 42 1 1.6818 -4.4812 7.0782 43 1 -0.1663 -3.9581 8.5516 44 1 0.4623 -5.5483 9.0514 45 1 -2.4503 -3.8955 7.6161 46 1 -3.0127 -5.3898 6.8322 47 1 3.1555 -0.6043 3.7815 48 1 1.6318 -0.2559 4.6383 49 1 1.8731 1.0347 2.4871 50 1 0.4400 -0.0212 2.5116 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267486496.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:10 Heat of formation + Delta-G solvation = -113.663505 kcal Electronic energy + Delta-G solvation = -30879.180088 eV Core-core repulsion = 26713.174577 eV Total energy + Delta-G solvation = -4166.005511 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.04652 -41.02431 -39.36431 -38.74300 -37.01816 -36.37978 -34.71618 -33.00334 -32.12118 -31.34288 -30.60548 -29.84535 -27.39026 -26.51455 -25.26571 -24.81802 -24.31017 -22.82036 -21.11236 -20.25674 -19.87515 -19.54995 -18.78904 -18.41722 -18.10775 -17.13691 -16.76035 -16.65399 -16.52689 -16.26667 -16.01329 -15.67404 -15.55442 -15.30635 -15.07883 -14.82613 -14.50681 -14.45687 -14.32152 -14.21263 -14.05282 -13.98199 -13.18103 -13.10384 -13.10232 -12.91490 -12.82820 -12.80572 -12.72238 -12.32167 -12.16220 -11.84844 -11.83029 -11.67486 -11.64390 -11.38754 -11.24333 -11.05288 -10.92892 -10.56768 -9.88289 -9.70685 -9.28889 -7.99754 -5.32632 1.23854 1.37044 1.43045 1.50030 1.50218 1.62526 2.09194 2.50876 2.74022 3.25482 3.31544 3.41203 3.54143 3.73506 3.77541 3.85920 3.98458 4.03946 4.10105 4.14558 4.18210 4.26439 4.32231 4.35625 4.38414 4.47011 4.50974 4.60665 4.65659 4.69493 4.74607 4.79784 4.82115 4.89632 4.94099 5.01327 5.06077 5.10319 5.19513 5.28854 5.36528 5.52706 5.65293 5.73038 5.80497 6.18478 6.24423 6.32207 6.85088 7.05786 7.11576 7.87916 8.08343 9.22214 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020798 B = 0.002466 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.942760 B =11352.193797 C =11680.486353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.177 3.823 3 H 0.039 0.961 4 N -0.748 5.748 5 C -0.226 4.226 6 H 0.051 0.949 7 C -0.070 4.070 8 N -0.988 5.988 9 Si 0.954 3.046 10 H -0.281 1.281 11 H -0.299 1.299 12 H -0.241 1.241 13 C -0.082 4.082 14 C -0.133 4.133 15 C 0.108 3.892 16 N -0.604 5.604 17 C 0.499 3.501 18 O -0.578 6.578 19 C 0.088 3.912 20 N -0.589 5.589 21 C 0.078 3.922 22 C 0.040 3.960 23 O -0.377 6.377 24 C 0.057 3.943 25 C 0.482 3.518 26 O -0.585 6.585 27 C 0.117 3.883 28 C -0.120 4.120 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.025 0.975 32 H 0.367 0.633 33 H 0.256 0.744 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.150 0.850 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.060 0.940 44 H 0.148 0.852 45 H 0.100 0.900 46 H 0.143 0.857 47 H 0.085 0.915 48 H 0.077 0.923 49 H 0.084 0.916 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.205 -14.776 30.498 33.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.069 3.931 3 H 0.057 0.943 4 N -0.392 5.392 5 C -0.357 4.357 6 H 0.069 0.931 7 C -0.261 4.261 8 N -0.639 5.639 9 Si 0.781 3.219 10 H -0.208 1.208 11 H -0.226 1.226 12 H -0.165 1.165 13 C -0.101 4.101 14 C -0.171 4.171 15 C -0.014 4.014 16 N -0.337 5.337 17 C 0.287 3.713 18 O -0.458 6.458 19 C -0.038 4.038 20 N -0.321 5.321 21 C -0.044 4.044 22 C -0.036 4.036 23 O -0.295 6.295 24 C -0.022 4.022 25 C 0.271 3.729 26 O -0.466 6.466 27 C -0.006 4.006 28 C -0.159 4.159 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.044 0.956 32 H 0.202 0.798 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.168 0.832 41 H 0.120 0.880 42 H 0.114 0.886 43 H 0.078 0.922 44 H 0.166 0.834 45 H 0.118 0.882 46 H 0.161 0.839 47 H 0.103 0.897 48 H 0.096 0.904 49 H 0.103 0.897 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.707 -14.254 30.504 33.713 hybrid contribution 0.183 0.049 -1.274 1.288 sum -1.524 -14.204 29.230 32.534 Atomic orbital electron populations 1.22375 0.98345 1.01090 1.00031 1.20367 0.92287 0.95019 0.85414 0.94273 1.42804 1.79878 1.09796 1.06752 1.19022 1.34955 0.94299 0.87450 0.93122 1.25550 1.02594 1.02904 0.95064 1.69900 1.55077 1.37864 1.01091 0.85417 0.77570 0.80344 0.78541 1.20770 1.22559 1.16461 1.21279 1.00512 0.95003 0.93315 1.21986 1.01277 0.95702 0.98119 1.21981 1.01814 0.95229 0.82336 1.48221 1.56594 1.11201 1.17684 1.21492 0.76563 0.90956 0.82326 1.90645 1.55360 1.66539 1.33260 1.21572 1.00765 0.91726 0.89732 1.47268 1.06005 1.62695 1.16088 1.22498 0.95422 1.01409 0.85040 1.23262 0.83205 1.00248 0.96897 1.88181 1.28066 1.48659 1.64590 1.22818 0.94236 0.99311 0.85839 1.21635 0.83232 0.76866 0.91176 1.90741 1.69806 1.48663 1.37399 1.21584 1.00597 0.80063 0.98315 1.21914 1.00910 0.99927 0.93139 0.92989 0.91720 0.95552 0.79847 0.93516 0.90464 0.91851 0.91008 0.88796 0.87538 0.87217 0.83215 0.87966 0.88612 0.92184 0.83414 0.88241 0.83917 0.89668 0.90431 0.89747 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.54 8.79 71.98 0.63 -4.91 16 2 C 0.18 6.39 2.72 44.99 0.12 6.51 16 3 H 0.04 1.53 8.08 -2.39 -0.02 1.51 16 4 N -0.75 -33.41 4.85 -322.94 -1.57 -34.97 16 5 C -0.23 -12.77 10.41 84.03 0.87 -11.89 16 6 H 0.05 3.19 8.06 -2.91 -0.02 3.16 16 7 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 8 N -0.99 -63.66 13.97 21.65 0.30 -63.36 16 9 Si 0.95 44.28 27.74 68.60 1.90 46.18 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 12 H -0.24 -9.57 6.52 99.48 0.65 -8.92 16 13 C -0.08 -2.17 2.14 -10.77 -0.02 -2.19 16 14 C -0.13 -3.12 4.81 30.67 0.15 -2.97 16 15 C 0.11 1.77 6.34 86.37 0.55 2.32 16 16 N -0.60 -12.06 2.97 -818.90 -2.43 -14.49 16 17 C 0.50 11.15 7.76 87.66 0.68 11.83 16 18 O -0.58 -17.06 15.84 -3.03 -0.05 -17.11 16 19 C 0.09 1.44 4.14 85.63 0.35 1.79 16 20 N -0.59 -10.14 2.32 -828.63 -1.92 -12.06 16 21 C 0.08 0.72 6.63 86.52 0.57 1.29 16 22 C 0.04 0.35 6.91 72.05 0.50 0.84 16 23 O -0.38 -5.00 10.85 -148.98 -1.62 -6.62 16 24 C 0.06 0.87 6.98 71.13 0.50 1.37 16 25 C 0.48 10.67 7.58 87.69 0.66 11.34 16 26 O -0.59 -18.07 16.36 -3.03 -0.05 -18.12 16 27 C 0.12 2.42 6.43 86.36 0.56 2.98 16 28 C -0.12 -2.77 4.96 30.67 0.15 -2.62 16 29 H 0.05 1.75 6.46 -2.39 -0.02 1.74 16 30 H 0.06 1.93 6.46 -2.39 -0.02 1.92 16 31 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.37 15.30 3.90 -92.71 -0.36 14.94 16 33 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 34 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.06 1.63 6.51 -2.38 -0.02 1.62 16 36 H 0.07 1.82 6.46 -2.39 -0.02 1.80 16 37 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.11 1.22 5.93 -2.39 -0.01 1.21 16 39 H 0.11 2.07 6.79 -2.39 -0.02 2.05 16 40 H 0.15 1.13 7.83 -2.39 -0.02 1.11 16 41 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.10 0.75 8.13 -2.39 -0.02 0.73 16 43 H 0.06 0.63 8.10 -2.39 -0.02 0.61 16 44 H 0.15 0.31 8.14 -2.38 -0.02 0.29 16 45 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 48 H 0.08 1.83 7.01 -2.39 -0.02 1.81 16 49 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.06 1.53 6.51 -2.38 -0.02 1.51 16 Total: -1.00 -82.86 385.54 1.84 -81.02 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 0.53 Total: 27.53 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 6.74 Total: 12.02 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -5.62 Total: -124.89 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -1.71 Total: -41.85 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.90 Total: 46.18 kcal Total: -82.86 1.84 -81.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267486496.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.647 kcal (2) G-P(sol) polarization free energy of solvation -82.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds