Wall clock time and date at job start Tue Mar 31 2020 22:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46657 * 2 1 4 4 C 1.52994 * 109.47158 * 120.00086 * 2 1 3 5 5 C 1.53001 * 109.46946 * 185.00047 * 4 2 1 6 6 N 1.46903 * 109.46948 * 179.97438 * 5 4 2 7 7 C 1.46900 * 110.99860 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47252 * 180.02562 * 7 6 5 9 9 O 1.21300 * 120.00135 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00171 * 180.02562 * 8 7 6 11 11 C 1.37096 * 119.99903 * 180.02562 * 10 8 7 12 12 H 1.08000 * 120.00279 * 359.97438 * 11 10 8 13 13 C 1.38952 * 120.00075 * 180.02562 * 11 10 8 14 14 N 1.31415 * 119.99876 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00302 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47120 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47442 * 119.99554 * 15 13 11 18 18 H 1.48508 * 109.47198 * 239.99999 * 15 13 11 19 19 N 1.46503 * 109.47046 * 240.00062 * 2 1 3 20 20 C 1.34777 * 119.99702 * 84.99994 * 19 2 1 21 21 O 1.21276 * 120.00448 * 359.97438 * 20 19 2 22 22 C 1.50704 * 119.99413 * 180.02562 * 20 19 2 23 23 H 1.08990 * 110.67022 * 61.76233 * 22 20 19 24 24 C 1.55001 * 110.74652 * 298.54076 * 22 20 19 25 25 C 1.55819 * 102.78905 * 241.67834 * 24 22 20 26 26 H 1.08996 * 115.39062 * 158.83573 * 25 24 22 27 27 C 1.55821 * 105.32994 * 287.31369 * 25 24 22 28 28 C 1.55002 * 102.95099 * 72.59484 * 27 25 24 29 29 C 1.55825 * 110.74290 * 185.17669 * 22 20 19 30 30 H 1.08995 * 115.39121 * 320.20523 * 29 22 20 31 31 O 1.46535 * 101.24527 * 85.90507 * 29 22 20 32 32 H 1.09002 * 109.46900 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47206 * 299.99480 * 1 2 3 34 34 H 1.08996 * 109.47476 * 60.00152 * 1 2 3 35 35 H 1.09004 * 109.47361 * 305.00007 * 4 2 1 36 36 H 1.08991 * 109.47613 * 65.00121 * 4 2 1 37 37 H 1.08995 * 109.47342 * 299.99639 * 5 4 2 38 38 H 1.09003 * 109.47049 * 60.00092 * 5 4 2 39 39 H 1.00900 * 110.99771 * 56.04988 * 6 5 4 40 40 H 1.08991 * 109.47697 * 300.00559 * 7 6 5 41 41 H 1.09002 * 109.47132 * 60.00583 * 7 6 5 42 42 H 0.97000 * 120.00015 * 0.02562 * 10 8 7 43 43 H 0.96994 * 120.00228 * 179.97438 * 14 13 11 44 44 H 0.96998 * 120.00113 * 265.00011 * 19 2 1 45 45 H 1.09002 * 110.74595 * 123.36020 * 24 22 20 46 46 H 1.08995 * 110.74976 * 0.02562 * 24 22 20 47 47 H 1.09002 * 110.75099 * 191.01396 * 27 25 24 48 48 H 1.08999 * 110.74965 * 314.18127 * 27 25 24 49 49 H 1.09007 * 110.74571 * 118.42225 * 28 27 25 50 50 H 1.09004 * 110.75000 * 241.76514 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3136 6 7 4.0545 -1.3052 2.5133 7 6 5.5181 -1.2227 2.6082 8 6 5.9826 -1.9425 3.8480 9 8 5.1739 -2.4727 4.5804 10 7 7.2965 -1.9972 4.1432 11 6 7.7190 -2.6526 5.2708 12 1 6.9990 -3.1246 5.9228 13 6 9.0736 -2.7086 5.5754 14 7 9.9497 -2.1338 4.7823 15 14 9.6493 -3.6008 7.1122 16 1 8.4749 -4.1578 7.8304 17 1 10.5654 -4.7052 6.7296 18 1 10.3652 -2.6484 7.9987 19 7 2.0184 -0.6906 -1.1962 20 6 2.1471 -0.0182 -2.3571 21 8 1.8582 1.1584 -2.4117 22 6 2.6488 -0.7288 -3.5877 23 1 1.9726 -1.5361 -3.8685 24 6 4.0846 -1.2681 -3.3633 25 6 4.9119 -0.5057 -4.4414 26 1 5.9834 -0.4450 -4.2517 27 6 4.5097 -1.1509 -5.8016 28 6 3.0729 -0.6157 -6.0286 29 6 2.8372 0.2737 -4.7657 30 1 2.0647 1.0371 -4.8578 31 8 4.1916 0.7689 -4.5058 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.6054 -0.2618 2.1370 36 1 1.7518 -1.7714 1.2056 37 1 3.9995 -1.0727 0.4259 38 1 3.8532 0.4371 1.3573 39 1 3.7451 -2.2655 2.5284 40 1 5.9660 -1.6869 1.7297 41 1 5.8204 -0.1767 2.6603 42 1 7.9432 -1.5730 3.5577 43 1 10.8952 -2.1725 4.9950 44 1 2.2491 -1.6318 -1.1527 45 1 4.1243 -2.3437 -3.5354 46 1 4.4368 -1.0233 -2.3613 47 1 5.1757 -0.8193 -6.5982 48 1 4.5096 -2.2384 -5.7281 49 1 3.0229 -0.0175 -6.9385 50 1 2.3564 -1.4364 -6.0651 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268402172.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:46 Heat of formation + Delta-G solvation = -115.658259 kcal Electronic energy + Delta-G solvation = -29484.921828 eV Core-core repulsion = 25318.829819 eV Total energy + Delta-G solvation = -4166.092010 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.47918 -39.51432 -38.31648 -36.88806 -34.99083 -33.83859 -33.00538 -32.06695 -31.24634 -30.66950 -30.04152 -29.20809 -26.25195 -24.36154 -23.83894 -22.42028 -21.99955 -21.20281 -20.85735 -20.16502 -19.23774 -17.92234 -17.78109 -16.97810 -16.64371 -16.18900 -15.84033 -15.56364 -15.29919 -14.80217 -14.67111 -14.44658 -14.36624 -13.94693 -13.75668 -13.70509 -13.56276 -13.09298 -13.01000 -12.75386 -12.30250 -12.26268 -12.22998 -12.06383 -11.91192 -11.69602 -11.53525 -11.52729 -11.41098 -11.31993 -11.14664 -11.07250 -10.97338 -10.90479 -10.35180 -10.31164 -10.23363 -9.89411 -9.53061 -9.31705 -8.47456 -8.07505 -7.96947 -6.42713 -3.83587 2.41049 2.86073 3.15538 3.26161 3.33413 3.45368 3.89494 3.99632 4.03454 4.10226 4.25136 4.27730 4.41792 4.55786 4.64364 4.73087 4.77224 4.80431 4.83670 4.97235 4.98409 5.07044 5.17460 5.22741 5.26640 5.34097 5.36910 5.41816 5.49955 5.52520 5.55481 5.58074 5.64159 5.68905 5.74419 5.78101 5.90225 5.94614 5.99643 6.06645 6.19169 6.25994 6.32157 7.19252 7.25147 7.54508 7.64423 8.00472 8.05570 8.60177 9.16938 9.53336 10.04633 10.75125 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.002071 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.776577 B =13518.529093 C =15199.449288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.090 0.910 4 C -0.125 4.125 5 C 0.060 3.940 6 N -0.669 5.669 7 C 0.051 3.949 8 C 0.441 3.559 9 O -0.584 6.584 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.104 0.896 13 C 0.021 3.979 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.281 1.281 19 N -0.724 5.724 20 C 0.525 3.475 21 O -0.533 6.533 22 C -0.143 4.143 23 H 0.109 0.891 24 C -0.141 4.141 25 C 0.060 3.940 26 H 0.133 0.867 27 C -0.150 4.150 28 C -0.149 4.149 29 C 0.088 3.912 30 H 0.137 0.863 31 O -0.363 6.363 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.025 0.975 38 H 0.071 0.929 39 H 0.348 0.652 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.399 0.601 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.545 1.111 -23.038 27.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.108 0.892 4 C -0.163 4.163 5 C -0.069 4.069 6 N -0.301 5.301 7 C -0.082 4.082 8 C 0.226 3.774 9 O -0.468 6.468 10 N -0.201 5.201 11 C -0.428 4.428 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.207 1.207 19 N -0.376 5.376 20 C 0.311 3.689 21 O -0.409 6.409 22 C -0.164 4.164 23 H 0.127 0.873 24 C -0.179 4.179 25 C 0.002 3.998 26 H 0.151 0.849 27 C -0.188 4.188 28 C -0.187 4.187 29 C 0.030 3.970 30 H 0.155 0.845 31 O -0.281 6.281 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.089 0.911 39 H 0.167 0.833 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.233 0.767 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.094 0.906 48 H 0.096 0.904 49 H 0.096 0.904 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.108 2.398 -22.097 26.875 hybrid contribution 1.169 -1.527 -0.278 1.943 sum -13.939 0.871 -22.375 26.376 Atomic orbital electron populations 1.22150 0.95092 1.02094 1.02603 1.20994 0.93996 0.97760 0.83501 0.89201 1.21877 0.95852 1.01195 0.97357 1.21959 0.94270 0.99827 0.90876 1.60068 1.09804 1.21643 1.38610 1.21662 0.88372 1.01308 0.96817 1.19817 0.83333 0.85903 0.88341 1.90521 1.53339 1.50595 1.52342 1.41878 1.05428 1.48874 1.23885 1.19755 0.91979 1.30083 1.01010 0.87860 1.25275 0.95640 0.97848 0.99259 1.69620 1.02502 1.44298 1.37891 0.85796 0.78755 0.78831 0.80938 1.19210 1.20770 1.20722 1.46144 1.67683 1.13996 1.09810 1.20309 0.77072 0.87191 0.84304 1.90706 1.49524 1.15765 1.84908 1.23111 0.98666 0.99755 0.94901 0.87335 1.23304 0.92810 1.00719 1.01056 1.24702 0.97863 0.83259 0.93960 0.84929 1.23273 0.96775 1.00731 0.97975 1.23339 0.97056 0.99629 0.98665 1.24590 0.86869 0.94142 0.91389 0.84519 1.90167 1.19003 1.26576 1.92386 0.92493 0.91355 0.92242 0.89100 0.91383 0.95728 0.91083 0.83334 0.94017 0.89629 0.77458 0.91909 0.76723 0.89506 0.90068 0.90650 0.90432 0.90388 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.48 37.16 0.35 -0.99 16 2 C 0.14 1.31 2.57 -67.93 -0.17 1.14 16 3 H 0.09 1.02 7.58 -51.93 -0.39 0.63 16 4 C -0.12 -1.18 5.01 -26.73 -0.13 -1.32 16 5 C 0.06 0.71 5.57 -3.82 -0.02 0.69 16 6 N -0.67 -10.56 6.13 -115.06 -0.71 -11.26 16 7 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 8 C 0.44 10.43 7.82 -10.99 -0.09 10.34 16 9 O -0.58 -15.87 15.78 5.54 0.09 -15.78 16 10 N -0.56 -14.35 5.29 -10.96 -0.06 -14.40 16 11 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 12 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 13 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 15 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 N -0.72 -6.01 4.44 -53.81 -0.24 -6.25 16 20 C 0.53 5.35 6.98 -10.98 -0.08 5.27 16 21 O -0.53 -7.58 15.55 5.56 0.09 -7.49 16 22 C -0.14 -1.05 2.89 -89.21 -0.26 -1.31 16 23 H 0.11 0.54 7.81 -51.93 -0.41 0.13 16 24 C -0.14 -0.95 6.11 -24.17 -0.15 -1.10 16 25 C 0.06 0.46 5.71 -23.72 -0.14 0.33 16 26 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 27 C -0.15 -0.87 6.51 -24.17 -0.16 -1.03 16 28 C -0.15 -0.88 6.55 -23.93 -0.16 -1.04 16 29 C 0.09 0.76 4.65 -23.48 -0.11 0.65 16 30 H 0.14 1.26 7.71 -51.93 -0.40 0.85 16 31 O -0.36 -4.09 11.65 -35.23 -0.41 -4.50 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.02 0.27 7.75 -51.93 -0.40 -0.13 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.35 5.53 8.43 -39.29 -0.33 5.20 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 42 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 43 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.40 2.48 8.60 -40.82 -0.35 2.13 16 45 H 0.09 0.40 7.81 -51.93 -0.41 0.00 16 46 H 0.08 0.64 7.73 -51.93 -0.40 0.24 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.08 0.34 7.81 -51.93 -0.41 -0.07 16 49 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.08 0.33 7.81 -51.93 -0.41 -0.07 16 LS Contribution 405.93 15.07 6.12 6.12 Total: -1.00 -34.57 405.93 -9.18 -43.75 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -8.39 Total: 13.17 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -1.38 Total: 4.49 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.28 Total: -55.76 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.24 Total: -27.77 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.57 -9.18 -43.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268402172.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.906 kcal (2) G-P(sol) polarization free energy of solvation -34.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds