Wall clock time and date at job start Tue Mar 31 2020 22:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46657 * 2 1 4 4 C 1.52994 * 109.47158 * 120.00086 * 2 1 3 5 5 C 1.53001 * 109.46946 * 185.00047 * 4 2 1 6 6 N 1.46903 * 109.46948 * 179.97438 * 5 4 2 7 7 C 1.46900 * 110.99860 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47252 * 180.02562 * 7 6 5 9 9 O 1.21300 * 120.00135 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00171 * 180.02562 * 8 7 6 11 11 C 1.37096 * 119.99903 * 180.02562 * 10 8 7 12 12 H 1.08000 * 120.00279 * 359.97438 * 11 10 8 13 13 C 1.38952 * 120.00075 * 180.02562 * 11 10 8 14 14 N 1.31415 * 119.99876 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00302 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47120 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47442 * 119.99554 * 15 13 11 18 18 H 1.48508 * 109.47198 * 239.99999 * 15 13 11 19 19 N 1.46503 * 109.47046 * 240.00062 * 2 1 3 20 20 C 1.34777 * 119.99702 * 84.99994 * 19 2 1 21 21 O 1.21276 * 120.00448 * 359.97438 * 20 19 2 22 22 C 1.50704 * 119.99413 * 180.02562 * 20 19 2 23 23 H 1.08990 * 110.67022 * 61.76233 * 22 20 19 24 24 C 1.55001 * 110.74652 * 298.54076 * 22 20 19 25 25 C 1.55819 * 102.78905 * 241.67834 * 24 22 20 26 26 H 1.08996 * 115.39062 * 158.83573 * 25 24 22 27 27 C 1.55821 * 105.32994 * 287.31369 * 25 24 22 28 28 C 1.55002 * 102.95099 * 72.59484 * 27 25 24 29 29 C 1.55825 * 110.74290 * 185.17669 * 22 20 19 30 30 H 1.08995 * 115.39121 * 320.20523 * 29 22 20 31 31 O 1.46535 * 101.24527 * 85.90507 * 29 22 20 32 32 H 1.09002 * 109.46900 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47206 * 299.99480 * 1 2 3 34 34 H 1.08996 * 109.47476 * 60.00152 * 1 2 3 35 35 H 1.09004 * 109.47361 * 305.00007 * 4 2 1 36 36 H 1.08991 * 109.47613 * 65.00121 * 4 2 1 37 37 H 1.08995 * 109.47342 * 299.99639 * 5 4 2 38 38 H 1.09003 * 109.47049 * 60.00092 * 5 4 2 39 39 H 1.00900 * 110.99771 * 56.04988 * 6 5 4 40 40 H 1.08991 * 109.47697 * 300.00559 * 7 6 5 41 41 H 1.09002 * 109.47132 * 60.00583 * 7 6 5 42 42 H 0.97000 * 120.00015 * 0.02562 * 10 8 7 43 43 H 0.96994 * 120.00228 * 179.97438 * 14 13 11 44 44 H 0.96998 * 120.00113 * 265.00011 * 19 2 1 45 45 H 1.09002 * 110.74595 * 123.36020 * 24 22 20 46 46 H 1.08995 * 110.74976 * 0.02562 * 24 22 20 47 47 H 1.09002 * 110.75099 * 191.01396 * 27 25 24 48 48 H 1.08999 * 110.74965 * 314.18127 * 27 25 24 49 49 H 1.09007 * 110.74571 * 118.42225 * 28 27 25 50 50 H 1.09004 * 110.75000 * 241.76514 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3136 6 7 4.0545 -1.3052 2.5133 7 6 5.5181 -1.2227 2.6082 8 6 5.9826 -1.9425 3.8480 9 8 5.1739 -2.4727 4.5804 10 7 7.2965 -1.9972 4.1432 11 6 7.7190 -2.6526 5.2708 12 1 6.9990 -3.1246 5.9228 13 6 9.0736 -2.7086 5.5754 14 7 9.9497 -2.1338 4.7823 15 14 9.6493 -3.6008 7.1122 16 1 8.4749 -4.1578 7.8304 17 1 10.5654 -4.7052 6.7296 18 1 10.3652 -2.6484 7.9987 19 7 2.0184 -0.6906 -1.1962 20 6 2.1471 -0.0182 -2.3571 21 8 1.8582 1.1584 -2.4117 22 6 2.6488 -0.7288 -3.5877 23 1 1.9726 -1.5361 -3.8685 24 6 4.0846 -1.2681 -3.3633 25 6 4.9119 -0.5057 -4.4414 26 1 5.9834 -0.4450 -4.2517 27 6 4.5097 -1.1509 -5.8016 28 6 3.0729 -0.6157 -6.0286 29 6 2.8372 0.2737 -4.7657 30 1 2.0647 1.0371 -4.8578 31 8 4.1916 0.7689 -4.5058 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.6054 -0.2618 2.1370 36 1 1.7518 -1.7714 1.2056 37 1 3.9995 -1.0727 0.4259 38 1 3.8532 0.4371 1.3573 39 1 3.7451 -2.2655 2.5284 40 1 5.9660 -1.6869 1.7297 41 1 5.8204 -0.1767 2.6603 42 1 7.9432 -1.5730 3.5577 43 1 10.8952 -2.1725 4.9950 44 1 2.2491 -1.6318 -1.1527 45 1 4.1243 -2.3437 -3.5354 46 1 4.4368 -1.0233 -2.3613 47 1 5.1757 -0.8193 -6.5982 48 1 4.5096 -2.2384 -5.7281 49 1 3.0229 -0.0175 -6.9385 50 1 2.3564 -1.4364 -6.0651 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268402172.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:45 Heat of formation + Delta-G solvation = -142.660725 kcal Electronic energy + Delta-G solvation = -29486.092743 eV Core-core repulsion = 25318.829819 eV Total energy + Delta-G solvation = -4167.262924 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.10536 -40.32938 -40.10047 -37.90874 -36.28638 -35.69596 -33.73765 -33.28080 -32.73320 -31.37202 -30.58913 -30.19772 -27.80071 -25.84899 -24.69015 -23.30518 -22.69512 -21.90496 -21.55156 -21.07021 -20.79429 -19.91428 -18.47867 -17.85485 -17.63696 -17.42146 -16.96990 -16.51721 -16.35867 -16.05892 -15.91445 -15.57824 -15.34581 -15.17307 -15.07392 -14.89925 -14.34447 -14.24962 -13.81947 -13.60970 -13.55363 -13.49951 -13.26152 -12.95537 -12.82110 -12.77309 -12.57486 -12.44531 -12.41615 -12.27738 -12.12552 -12.06010 -12.04074 -11.88736 -11.80377 -11.52030 -11.46485 -10.94502 -10.66694 -10.37622 -10.08714 -10.02590 -9.33665 -8.47477 -5.96398 1.36523 1.42068 1.56338 1.64646 2.03522 2.17322 2.28663 2.87395 2.89230 3.19726 3.41528 3.48329 3.55666 3.72182 3.85880 3.93574 3.98294 4.05229 4.12826 4.19811 4.26001 4.29710 4.39527 4.43019 4.45285 4.47662 4.51891 4.60440 4.61251 4.66496 4.81094 4.87616 4.94288 4.98698 5.01065 5.08725 5.11077 5.14801 5.18280 5.23347 5.30514 5.40692 5.56999 5.65476 5.87218 6.08417 6.42562 6.57125 6.58784 7.11643 7.28153 7.54911 8.09762 8.70194 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.002071 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.776577 B =13518.529093 C =15199.449288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.147 3.853 3 H 0.064 0.936 4 C -0.113 4.113 5 C 0.064 3.936 6 N -0.682 5.682 7 C 0.065 3.935 8 C 0.438 3.562 9 O -0.622 6.622 10 N -0.574 5.574 11 C -0.333 4.333 12 H 0.080 0.920 13 C -0.014 4.014 14 N -0.921 5.921 15 Si 0.994 3.006 16 H -0.273 1.273 17 H -0.269 1.269 18 H -0.272 1.272 19 N -0.712 5.712 20 C 0.520 3.480 21 O -0.582 6.582 22 C -0.135 4.135 23 H 0.142 0.858 24 C -0.135 4.135 25 C 0.047 3.953 26 H 0.135 0.865 27 C -0.143 4.143 28 C -0.141 4.141 29 C 0.075 3.925 30 H 0.118 0.882 31 O -0.406 6.406 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.040 0.960 38 H 0.061 0.939 39 H 0.347 0.653 40 H 0.068 0.932 41 H 0.097 0.903 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.412 0.588 45 H 0.118 0.882 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.101 0.899 49 H 0.075 0.925 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.618 -0.840 -23.991 28.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.042 3.958 3 H 0.082 0.918 4 C -0.151 4.151 5 C -0.065 4.065 6 N -0.315 5.315 7 C -0.068 4.068 8 C 0.226 3.774 9 O -0.509 6.509 10 N -0.211 5.211 11 C -0.462 4.462 12 H 0.098 0.902 13 C -0.214 4.214 14 N -0.562 5.562 15 Si 0.817 3.183 16 H -0.197 1.197 17 H -0.195 1.195 18 H -0.197 1.197 19 N -0.365 5.365 20 C 0.307 3.693 21 O -0.461 6.461 22 C -0.156 4.156 23 H 0.160 0.840 24 C -0.172 4.172 25 C -0.010 4.010 26 H 0.153 0.847 27 C -0.181 4.181 28 C -0.179 4.179 29 C 0.017 3.983 30 H 0.136 0.864 31 O -0.326 6.326 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.166 0.834 40 H 0.085 0.915 41 H 0.115 0.885 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.249 0.751 45 H 0.136 0.864 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.119 0.881 49 H 0.094 0.906 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.171 0.429 -23.072 27.617 hybrid contribution 1.166 -0.857 0.003 1.447 sum -14.005 -0.427 -23.069 26.991 Atomic orbital electron populations 1.22084 0.94118 1.02950 1.02160 1.20844 0.94661 0.96515 0.83760 0.91766 1.21760 0.94022 1.02186 0.97108 1.21987 0.95749 0.98845 0.89890 1.60048 1.08495 1.21938 1.40999 1.21511 0.89827 1.01066 0.94348 1.20852 0.82347 0.84816 0.89434 1.90489 1.54144 1.52092 1.54150 1.41953 1.06329 1.49180 1.23607 1.19710 0.92346 1.31891 1.02285 0.90235 1.26066 0.95195 0.98122 1.02005 1.69679 1.02954 1.44535 1.39031 0.84858 0.78077 0.78007 0.77318 1.19710 1.19453 1.19746 1.46048 1.66833 1.14527 1.09048 1.20885 0.76247 0.86741 0.85387 1.90689 1.51745 1.17996 1.85701 1.23142 0.99714 0.99873 0.92860 0.84045 1.23317 0.91718 1.02291 0.99918 1.24955 0.98056 0.82348 0.95643 0.84708 1.23266 0.96353 1.01874 0.96598 1.23324 0.97804 0.99711 0.97031 1.24680 0.85642 0.94484 0.93458 0.86381 1.90127 1.20580 1.29066 1.92813 0.90906 0.90848 0.93682 0.89669 0.89639 0.94141 0.92033 0.83371 0.91463 0.88527 0.77009 0.91285 0.75087 0.86380 0.91477 0.90855 0.88100 0.90613 0.88034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.48 71.98 0.68 -1.73 16 2 C 0.15 2.59 2.57 44.99 0.12 2.70 16 3 H 0.06 1.49 7.58 -2.39 -0.02 1.47 16 4 C -0.11 -1.95 5.01 30.59 0.15 -1.80 16 5 C 0.06 1.41 5.57 86.30 0.48 1.90 16 6 N -0.68 -20.58 6.13 -517.94 -3.17 -23.76 16 7 C 0.06 2.21 6.17 85.56 0.53 2.74 16 8 C 0.44 20.76 7.82 87.66 0.69 21.44 16 9 O -0.62 -34.25 15.78 -3.09 -0.05 -34.30 16 10 N -0.57 -29.43 5.29 -306.98 -1.62 -31.06 16 11 C -0.33 -18.88 9.68 84.04 0.81 -18.07 16 12 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 13 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 14 N -0.92 -49.67 13.05 21.66 0.28 -49.39 16 15 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 18 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 19 N -0.71 -10.70 4.44 -442.53 -1.97 -12.67 16 20 C 0.52 10.27 6.98 87.66 0.61 10.88 16 21 O -0.58 -17.15 15.55 -3.02 -0.05 -17.19 16 22 C -0.13 -1.74 2.89 -9.88 -0.03 -1.77 16 23 H 0.14 0.88 7.81 -2.39 -0.02 0.86 16 24 C -0.13 -1.49 6.11 32.25 0.20 -1.29 16 25 C 0.05 0.67 5.71 32.54 0.19 0.85 16 26 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 27 C -0.14 -1.32 6.51 32.25 0.21 -1.11 16 28 C -0.14 -1.39 6.55 32.41 0.21 -1.18 16 29 C 0.08 1.27 4.65 32.70 0.15 1.42 16 30 H 0.12 2.33 7.71 -2.39 -0.02 2.31 16 31 O -0.41 -9.33 11.65 -148.98 -1.74 -11.07 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.04 0.78 7.75 -2.39 -0.02 0.76 16 38 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.35 10.54 8.43 -89.69 -0.76 9.79 16 40 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 42 H 0.40 19.34 7.90 -92.71 -0.73 18.60 16 43 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 44 H 0.41 3.96 8.60 -92.71 -0.80 3.16 16 45 H 0.12 0.58 7.81 -2.39 -0.02 0.56 16 46 H 0.07 0.94 7.73 -2.39 -0.02 0.92 16 47 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.10 0.47 7.81 -2.39 -0.02 0.46 16 49 H 0.08 0.77 8.14 -2.38 -0.02 0.76 16 50 H 0.10 0.51 7.81 -2.38 -0.02 0.49 16 Total: -1.00 -77.23 405.93 -2.13 -79.37 By element: Atomic # 1 Polarization: 41.92 SS G_CDS: -1.32 Total: 40.60 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 5.47 Total: 14.69 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -6.48 Total: -116.87 kcal Atomic # 8 Polarization: -60.73 SS G_CDS: -1.83 Total: -62.56 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -77.23 -2.13 -79.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268402172.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.293 kcal (2) G-P(sol) polarization free energy of solvation -77.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds