Wall clock time and date at job start Tue Mar 31 2020 23:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47242 * 2 1 4 4 C 1.50699 * 109.47310 * 239.99996 * 2 1 3 5 5 O 1.21286 * 119.99687 * 239.99924 * 4 2 1 6 6 N 1.34767 * 120.00262 * 59.99748 * 4 2 1 7 7 C 1.46503 * 120.00136 * 179.97438 * 6 4 2 8 8 C 1.50701 * 109.47251 * 180.02562 * 7 6 4 9 9 C 1.30995 * 119.99997 * 125.00061 * 8 7 6 10 10 C 1.50701 * 119.99997 * 180.02562 * 9 8 7 11 11 N 1.46905 * 109.47116 * 125.00233 * 10 9 8 12 12 C 1.46893 * 110.99949 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47011 * 179.97438 * 12 11 10 14 14 O 1.21292 * 120.00089 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00318 * 179.97438 * 13 12 11 16 16 C 1.37095 * 120.00217 * 180.02562 * 15 13 12 17 17 H 1.08003 * 120.00014 * 359.97438 * 16 15 13 18 18 C 1.38949 * 119.99889 * 180.02562 * 16 15 13 19 19 N 1.31414 * 120.00209 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99863 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47134 * 90.00002 * 20 18 16 22 22 H 1.48500 * 109.47243 * 209.99415 * 20 18 16 23 23 H 1.48503 * 109.47359 * 329.99619 * 20 18 16 24 24 C 1.53004 * 109.47061 * 119.99481 * 2 1 3 25 25 H 1.09006 * 110.41382 * 62.31540 * 24 2 1 26 26 C 1.54477 * 110.37491 * 300.00464 * 24 2 1 27 27 C 1.54510 * 104.18108 * 217.25643 * 26 24 2 28 28 C 1.54478 * 104.06500 * 359.93120 * 27 26 24 29 29 O 1.44415 * 104.80258 * 23.97587 * 28 27 26 30 30 H 1.09006 * 109.47242 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47261 * 300.00032 * 1 2 3 32 32 H 1.09000 * 109.47049 * 60.00221 * 1 2 3 33 33 H 0.97006 * 119.99853 * 0.02562 * 6 4 2 34 34 H 1.08994 * 109.47523 * 300.00248 * 7 6 4 35 35 H 1.09006 * 109.46880 * 60.00595 * 7 6 4 36 36 H 1.08009 * 119.99691 * 305.00842 * 8 7 6 37 37 H 1.07995 * 120.00135 * 0.02562 * 9 8 7 38 38 H 1.08997 * 109.47174 * 244.99984 * 10 9 8 39 39 H 1.09003 * 109.46955 * 5.00592 * 10 9 8 40 40 H 1.00893 * 110.99748 * 56.04639 * 11 10 9 41 41 H 1.09000 * 109.47551 * 299.99917 * 12 11 10 42 42 H 1.09001 * 109.47657 * 60.00435 * 12 11 10 43 43 H 0.96996 * 119.99534 * 0.02562 * 15 13 12 44 44 H 0.97003 * 120.00166 * 180.02562 * 19 18 16 45 45 H 1.09002 * 110.51371 * 98.54158 * 26 24 2 46 46 H 1.08994 * 110.51108 * 335.96806 * 26 24 2 47 47 H 1.09000 * 110.51039 * 118.57850 * 27 26 24 48 48 H 1.08999 * 110.50726 * 241.28208 * 27 26 24 49 49 H 1.08998 * 110.37372 * 142.81215 * 28 27 26 50 50 H 1.09004 * 110.36996 * 265.03321 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7297 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1956 -0.9404 -3.6507 8 6 1.6937 -0.2297 -4.8812 9 6 2.5412 0.1820 -5.7912 10 6 2.0394 0.8931 -7.0215 11 7 2.7159 2.1911 -7.1470 12 6 2.2502 2.9145 -8.3377 13 6 2.9642 4.2382 -8.4325 14 8 3.7811 4.5482 -7.5912 15 7 2.6959 5.0771 -9.4526 16 6 3.3459 6.2811 -9.5391 17 1 4.0727 6.5575 -8.7896 18 6 3.0689 7.1462 -10.5906 19 7 2.1842 6.8101 -11.5024 20 14 3.9540 8.7869 -10.7081 21 1 5.1998 8.6218 -11.4992 22 1 3.0722 9.7785 -11.3748 23 1 4.2937 9.2650 -9.3438 24 6 2.0400 -0.7212 1.2493 25 1 1.7192 -1.7629 1.2446 26 6 1.5365 -0.0092 2.5245 27 6 2.7218 -0.1147 3.5100 28 6 3.8034 -0.8801 2.7157 29 8 3.4819 -0.6395 1.3285 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.1493 0.5389 -2.5435 34 1 3.2856 -0.9399 -3.6505 35 1 1.8327 -1.9682 -3.6508 36 1 0.6352 -0.0598 -5.0126 37 1 3.5996 0.0119 -5.6599 38 1 2.2497 0.2871 -7.9027 39 1 0.9641 1.0506 -6.9369 40 1 3.7181 2.0764 -7.1622 41 1 2.4615 2.3226 -9.2283 42 1 1.1764 3.0860 -8.2618 43 1 2.0429 4.8290 -10.1256 44 1 1.9911 7.4138 -12.2367 45 1 0.6600 -0.5183 2.9254 46 1 1.3071 1.0352 2.3134 47 1 3.0799 0.8776 3.7843 48 1 2.4313 -0.6759 4.3981 49 1 4.7936 -0.4889 2.9492 50 1 3.7550 -1.9459 2.9390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268586999.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:57 Heat of formation + Delta-G solvation = -110.941288 kcal Electronic energy + Delta-G solvation = -27919.946336 eV Core-core repulsion = 23754.058869 eV Total energy + Delta-G solvation = -4165.887466 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.52190 -39.11268 -38.33353 -36.72028 -35.18031 -34.47516 -33.89304 -32.68792 -32.20478 -31.21589 -28.79227 -28.08476 -26.23769 -25.01619 -24.13081 -22.85822 -22.31558 -21.23459 -20.48805 -19.82409 -19.12804 -17.89106 -17.65591 -16.82516 -16.26430 -16.26203 -16.03998 -15.61264 -15.50871 -15.17574 -14.66414 -14.43669 -14.32466 -14.04128 -13.96434 -13.73597 -13.62152 -13.51020 -13.25096 -12.79695 -12.52760 -12.43831 -12.22083 -12.06247 -11.95873 -11.78310 -11.58120 -11.51816 -11.51005 -11.45357 -11.16259 -11.04543 -11.00000 -10.39700 -10.22524 -10.03034 -10.01689 -9.52351 -9.50207 -9.13290 -8.47471 -8.06133 -7.96529 -6.42379 -3.83228 1.86198 2.50257 3.11930 3.17572 3.26304 3.32460 3.49785 3.90079 4.11804 4.12089 4.24757 4.36011 4.47278 4.51240 4.58471 4.68049 4.75045 4.86815 4.88518 4.96013 5.09781 5.12098 5.21722 5.23606 5.24858 5.29672 5.33450 5.38123 5.43341 5.44139 5.49252 5.51969 5.60513 5.64534 5.70627 5.71173 5.78580 5.95246 6.18925 6.24773 6.45297 6.56356 6.61001 7.16644 7.31887 7.54691 7.61948 8.05667 8.07006 8.60597 9.17271 9.53491 10.05007 10.75320 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015893 B = 0.001466 C = 0.001393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.326398 B =19092.993349 C =20095.147611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 H 0.107 0.893 4 C 0.518 3.482 5 O -0.529 6.529 6 N -0.727 5.727 7 C 0.154 3.846 8 C -0.183 4.183 9 C -0.111 4.111 10 C 0.082 3.918 11 N -0.665 5.665 12 C 0.050 3.950 13 C 0.440 3.560 14 O -0.583 6.583 15 N -0.563 5.563 16 C -0.300 4.300 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.269 1.269 24 C 0.096 3.904 25 H 0.075 0.925 26 C -0.151 4.151 27 C -0.156 4.156 28 C 0.043 3.957 29 O -0.358 6.358 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.402 0.598 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.039 0.961 39 H 0.076 0.924 40 H 0.351 0.649 41 H 0.044 0.956 42 H 0.086 0.914 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.090 0.910 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.059 -17.602 23.547 30.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.129 4.129 3 H 0.125 0.875 4 C 0.304 3.696 5 O -0.405 6.405 6 N -0.379 5.379 7 C 0.031 3.969 8 C -0.202 4.202 9 C -0.131 4.131 10 C -0.047 4.047 11 N -0.298 5.298 12 C -0.082 4.082 13 C 0.226 3.774 14 O -0.467 6.467 15 N -0.200 5.200 16 C -0.430 4.430 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C 0.038 3.962 25 H 0.093 0.907 26 C -0.189 4.189 27 C -0.194 4.194 28 C -0.034 4.034 29 O -0.276 6.276 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.237 0.763 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.170 0.830 41 H 0.062 0.938 42 H 0.104 0.896 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.108 0.892 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.340 -17.637 24.255 30.653 hybrid contribution -0.001 0.575 -1.239 1.367 sum -6.341 -17.062 23.016 29.344 Atomic orbital electron populations 1.21775 0.91831 1.03138 1.03415 1.21408 0.97542 1.01522 0.92391 0.87545 1.20447 0.80144 0.84683 0.84362 1.90726 1.36927 1.26208 1.86613 1.46018 1.54238 1.32347 1.05345 1.20280 0.99140 0.95581 0.81929 1.22735 0.99918 1.02241 0.95353 1.22880 0.99603 0.95084 0.95486 1.21086 0.99350 0.89444 0.94776 1.60115 1.11614 1.17414 1.40646 1.21688 1.00537 0.94731 0.91285 1.19801 0.86903 0.86443 0.84290 1.90528 1.37587 1.76905 1.41670 1.41859 1.38234 1.16659 1.23267 1.19715 1.20432 0.93061 1.09747 0.87905 1.25261 0.97080 1.00026 0.95549 1.69613 1.33205 1.38029 1.13475 0.85851 0.78799 0.80977 0.78625 1.20421 1.20920 1.19402 1.22755 0.82025 0.98726 0.92738 0.90741 1.23032 0.98666 1.02048 0.95165 1.22953 0.95834 1.01756 0.98850 1.23382 0.99032 0.99199 0.81807 1.89278 1.20497 1.92541 1.25294 0.91781 0.90937 0.91249 0.76325 0.91170 0.91007 0.86603 0.86949 0.94317 0.90519 0.83011 0.93787 0.89563 0.77456 0.91877 0.90343 0.90300 0.90586 0.90591 0.89150 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 8.86 37.16 0.33 -0.39 16 2 C -0.11 -0.85 2.41 -91.77 -0.22 -1.07 16 3 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 4 C 0.52 5.72 7.05 -10.99 -0.08 5.64 16 5 O -0.53 -8.01 15.50 -8.04 -0.12 -8.14 16 6 N -0.73 -6.74 5.44 -61.47 -0.33 -7.07 16 7 C 0.15 1.50 6.11 -5.19 -0.03 1.47 16 8 C -0.18 -1.68 9.24 -36.02 -0.33 -2.01 16 9 C -0.11 -1.17 9.38 -36.02 -0.34 -1.51 16 10 C 0.08 0.97 6.12 -4.97 -0.03 0.94 16 11 N -0.67 -10.64 6.11 -116.34 -0.71 -11.35 16 12 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 13 C 0.44 10.41 7.82 -10.98 -0.09 10.32 16 14 O -0.58 -15.94 15.78 5.55 0.09 -15.85 16 15 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 16 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 17 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.46 13.05 55.50 0.72 -23.74 16 20 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 C 0.10 0.83 2.30 -25.95 -0.06 0.77 16 25 H 0.07 0.70 8.06 -51.93 -0.42 0.28 16 26 C -0.15 -0.87 5.54 -25.16 -0.14 -1.01 16 27 C -0.16 -0.89 7.09 -25.16 -0.18 -1.06 16 28 C 0.04 0.34 7.64 37.93 0.29 0.62 16 29 O -0.36 -4.12 10.63 -48.83 -0.52 -4.64 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.26 7.11 -51.93 -0.37 -0.11 16 32 H 0.07 0.29 7.56 -51.93 -0.39 -0.11 16 33 H 0.40 2.88 7.88 -40.82 -0.32 2.56 16 34 H 0.07 0.78 7.79 -51.93 -0.40 0.38 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.12 0.93 7.84 -52.48 -0.41 0.52 16 37 H 0.11 1.17 7.84 -52.49 -0.41 0.76 16 38 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.84 7.79 -51.93 -0.40 0.44 16 40 H 0.35 5.81 8.42 -39.30 -0.33 5.48 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 43 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 44 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.08 0.40 7.64 -51.93 -0.40 0.01 16 47 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 414.45 15.07 6.25 6.25 Total: -1.00 -35.14 414.45 -9.21 -44.34 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -8.35 Total: 12.98 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -1.15 Total: 5.53 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.38 Total: -56.49 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.56 Total: -28.63 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -35.14 -9.21 -44.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268586999.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.599 kcal (2) G-P(sol) polarization free energy of solvation -35.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds