Wall clock time and date at job start Tue Mar 31 2020 23:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47242 * 2 1 4 4 C 1.50699 * 109.47310 * 239.99996 * 2 1 3 5 5 O 1.21286 * 119.99687 * 239.99924 * 4 2 1 6 6 N 1.34767 * 120.00262 * 59.99748 * 4 2 1 7 7 C 1.46503 * 120.00136 * 179.97438 * 6 4 2 8 8 C 1.50701 * 109.47251 * 180.02562 * 7 6 4 9 9 C 1.30995 * 119.99997 * 125.00061 * 8 7 6 10 10 C 1.50701 * 119.99997 * 180.02562 * 9 8 7 11 11 N 1.46905 * 109.47116 * 125.00233 * 10 9 8 12 12 C 1.46893 * 110.99949 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47011 * 179.97438 * 12 11 10 14 14 O 1.21292 * 120.00089 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00318 * 179.97438 * 13 12 11 16 16 C 1.37095 * 120.00217 * 180.02562 * 15 13 12 17 17 H 1.08003 * 120.00014 * 359.97438 * 16 15 13 18 18 C 1.38949 * 119.99889 * 180.02562 * 16 15 13 19 19 N 1.31414 * 120.00209 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99863 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47134 * 90.00002 * 20 18 16 22 22 H 1.48500 * 109.47243 * 209.99415 * 20 18 16 23 23 H 1.48503 * 109.47359 * 329.99619 * 20 18 16 24 24 C 1.53004 * 109.47061 * 119.99481 * 2 1 3 25 25 H 1.09006 * 110.41382 * 62.31540 * 24 2 1 26 26 C 1.54477 * 110.37491 * 300.00464 * 24 2 1 27 27 C 1.54510 * 104.18108 * 217.25643 * 26 24 2 28 28 C 1.54478 * 104.06500 * 359.93120 * 27 26 24 29 29 O 1.44415 * 104.80258 * 23.97587 * 28 27 26 30 30 H 1.09006 * 109.47242 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47261 * 300.00032 * 1 2 3 32 32 H 1.09000 * 109.47049 * 60.00221 * 1 2 3 33 33 H 0.97006 * 119.99853 * 0.02562 * 6 4 2 34 34 H 1.08994 * 109.47523 * 300.00248 * 7 6 4 35 35 H 1.09006 * 109.46880 * 60.00595 * 7 6 4 36 36 H 1.08009 * 119.99691 * 305.00842 * 8 7 6 37 37 H 1.07995 * 120.00135 * 0.02562 * 9 8 7 38 38 H 1.08997 * 109.47174 * 244.99984 * 10 9 8 39 39 H 1.09003 * 109.46955 * 5.00592 * 10 9 8 40 40 H 1.00893 * 110.99748 * 56.04639 * 11 10 9 41 41 H 1.09000 * 109.47551 * 299.99917 * 12 11 10 42 42 H 1.09001 * 109.47657 * 60.00435 * 12 11 10 43 43 H 0.96996 * 119.99534 * 0.02562 * 15 13 12 44 44 H 0.97003 * 120.00166 * 180.02562 * 19 18 16 45 45 H 1.09002 * 110.51371 * 98.54158 * 26 24 2 46 46 H 1.08994 * 110.51108 * 335.96806 * 26 24 2 47 47 H 1.09000 * 110.51039 * 118.57850 * 27 26 24 48 48 H 1.08999 * 110.50726 * 241.28208 * 27 26 24 49 49 H 1.08998 * 110.37372 * 142.81215 * 28 27 26 50 50 H 1.09004 * 110.36996 * 265.03321 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7297 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1956 -0.9404 -3.6507 8 6 1.6937 -0.2297 -4.8812 9 6 2.5412 0.1820 -5.7912 10 6 2.0394 0.8931 -7.0215 11 7 2.7159 2.1911 -7.1470 12 6 2.2502 2.9145 -8.3377 13 6 2.9642 4.2382 -8.4325 14 8 3.7811 4.5482 -7.5912 15 7 2.6959 5.0771 -9.4526 16 6 3.3459 6.2811 -9.5391 17 1 4.0727 6.5575 -8.7896 18 6 3.0689 7.1462 -10.5906 19 7 2.1842 6.8101 -11.5024 20 14 3.9540 8.7869 -10.7081 21 1 5.1998 8.6218 -11.4992 22 1 3.0722 9.7785 -11.3748 23 1 4.2937 9.2650 -9.3438 24 6 2.0400 -0.7212 1.2493 25 1 1.7192 -1.7629 1.2446 26 6 1.5365 -0.0092 2.5245 27 6 2.7218 -0.1147 3.5100 28 6 3.8034 -0.8801 2.7157 29 8 3.4819 -0.6395 1.3285 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.1493 0.5389 -2.5435 34 1 3.2856 -0.9399 -3.6505 35 1 1.8327 -1.9682 -3.6508 36 1 0.6352 -0.0598 -5.0126 37 1 3.5996 0.0119 -5.6599 38 1 2.2497 0.2871 -7.9027 39 1 0.9641 1.0506 -6.9369 40 1 3.7181 2.0764 -7.1622 41 1 2.4615 2.3226 -9.2283 42 1 1.1764 3.0860 -8.2618 43 1 2.0429 4.8290 -10.1256 44 1 1.9911 7.4138 -12.2367 45 1 0.6600 -0.5183 2.9254 46 1 1.3071 1.0352 2.3134 47 1 3.0799 0.8776 3.7843 48 1 2.4313 -0.6759 4.3981 49 1 4.7936 -0.4889 2.9492 50 1 3.7550 -1.9459 2.9390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268586999.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:57 Heat of formation + Delta-G solvation = -137.697979 kcal Electronic energy + Delta-G solvation = -27921.106593 eV Core-core repulsion = 23754.058869 eV Total energy + Delta-G solvation = -4167.047724 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.27080 -40.16106 -39.84010 -37.76799 -36.32894 -35.80909 -35.13537 -33.68456 -33.22186 -32.76826 -29.80020 -28.79910 -27.57039 -26.09854 -25.30000 -23.79083 -23.06556 -21.88139 -21.36921 -21.03173 -20.42560 -19.86644 -18.38761 -17.91253 -17.46980 -17.01685 -16.96993 -16.68264 -16.50126 -16.26657 -16.06763 -15.92625 -15.31144 -15.27950 -15.10284 -14.71136 -14.57599 -14.43817 -14.05283 -13.99616 -13.54301 -13.38079 -13.20879 -13.06063 -12.90851 -12.87278 -12.71570 -12.59638 -12.49545 -12.41880 -12.12544 -12.08608 -12.03511 -11.95615 -11.50965 -11.44963 -10.89367 -10.70680 -10.37194 -10.35396 -10.01998 -9.98943 -9.27208 -8.46700 -5.95509 1.04632 1.38270 1.42352 1.55029 1.65936 2.05316 2.29769 2.36719 2.92599 3.01369 3.20611 3.58168 3.58615 3.66715 3.76797 3.90041 3.99673 4.08887 4.11440 4.17520 4.30606 4.36232 4.42997 4.45095 4.47825 4.52407 4.56117 4.59731 4.66721 4.69077 4.77533 4.83410 4.86572 4.87673 4.96248 5.00952 5.14279 5.20955 5.27111 5.38993 5.41024 5.66102 5.76688 5.89990 5.96333 6.10178 6.36608 6.55732 6.60303 7.12706 7.26355 7.56260 8.11840 8.70560 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015893 B = 0.001466 C = 0.001393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.326398 B =19092.993349 C =20095.147611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.103 4.103 3 H 0.113 0.887 4 C 0.511 3.489 5 O -0.578 6.578 6 N -0.717 5.717 7 C 0.153 3.847 8 C -0.161 4.161 9 C -0.128 4.128 10 C 0.087 3.913 11 N -0.682 5.682 12 C 0.065 3.935 13 C 0.436 3.564 14 O -0.625 6.625 15 N -0.572 5.572 16 C -0.336 4.336 17 H 0.078 0.922 18 C -0.011 4.011 19 N -0.919 5.919 20 Si 0.993 3.007 21 H -0.271 1.271 22 H -0.270 1.270 23 H -0.274 1.274 24 C 0.088 3.912 25 H 0.059 0.941 26 C -0.144 4.144 27 C -0.151 4.151 28 C 0.032 3.968 29 O -0.397 6.397 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.415 0.585 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.137 0.863 37 H 0.106 0.894 38 H 0.052 0.948 39 H 0.091 0.909 40 H 0.343 0.657 41 H 0.068 0.932 42 H 0.108 0.892 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.097 0.903 46 H 0.089 0.911 47 H 0.081 0.919 48 H 0.093 0.907 49 H 0.093 0.907 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.046 -17.180 23.986 30.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.124 4.124 3 H 0.131 0.869 4 C 0.298 3.702 5 O -0.457 6.457 6 N -0.370 5.370 7 C 0.030 3.970 8 C -0.180 4.180 9 C -0.147 4.147 10 C -0.040 4.040 11 N -0.314 5.314 12 C -0.067 4.067 13 C 0.223 3.777 14 O -0.512 6.512 15 N -0.210 5.210 16 C -0.466 4.466 17 H 0.096 0.904 18 C -0.211 4.211 19 N -0.560 5.560 20 Si 0.816 3.184 21 H -0.197 1.197 22 H -0.194 1.194 23 H -0.199 1.199 24 C 0.030 3.970 25 H 0.077 0.923 26 C -0.182 4.182 27 C -0.189 4.189 28 C -0.044 4.044 29 O -0.317 6.317 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.251 0.749 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.154 0.846 37 H 0.124 0.876 38 H 0.070 0.930 39 H 0.109 0.891 40 H 0.162 0.838 41 H 0.086 0.914 42 H 0.126 0.874 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.116 0.884 46 H 0.108 0.892 47 H 0.099 0.901 48 H 0.111 0.889 49 H 0.112 0.888 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.378 -17.215 24.672 31.229 hybrid contribution 0.636 0.355 -1.344 1.529 sum -7.742 -16.860 23.328 29.806 Atomic orbital electron populations 1.21798 0.89254 1.03466 1.05064 1.21478 0.99511 1.00995 0.90416 0.86926 1.21108 0.79310 0.84172 0.85563 1.90699 1.39183 1.28506 1.87335 1.45966 1.53772 1.32441 1.04819 1.20222 0.98172 0.95998 0.82598 1.22764 1.00649 1.00538 0.94032 1.22808 0.99669 0.96390 0.95867 1.21124 0.99585 0.87622 0.95709 1.60128 1.11483 1.19879 1.39957 1.21552 1.00608 0.91467 0.93098 1.20928 0.86045 0.87971 0.82707 1.90495 1.39440 1.78277 1.42963 1.41923 1.38465 1.16492 1.24071 1.19674 1.21545 0.95034 1.10327 0.90409 1.26022 0.97491 1.02894 0.94715 1.69668 1.33542 1.39147 1.13629 0.84933 0.78045 0.77026 0.78357 1.19664 1.19449 1.19878 1.22902 0.81025 0.98511 0.94566 0.92291 1.23032 0.99174 1.02483 0.93483 1.22952 0.94950 1.01912 0.99060 1.23570 1.00202 0.99713 0.80938 1.89236 1.22366 1.92733 1.27381 0.92097 0.88858 0.90047 0.74863 0.93015 0.90876 0.84570 0.87554 0.92990 0.89117 0.83837 0.91379 0.87424 0.76891 0.91271 0.88407 0.89227 0.90056 0.88851 0.88847 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.86 71.98 0.64 -0.44 16 2 C -0.10 -1.54 2.41 -11.54 -0.03 -1.57 16 3 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 4 C 0.51 11.38 7.05 87.66 0.62 12.00 16 5 O -0.58 -18.34 15.50 9.95 0.15 -18.19 16 6 N -0.72 -12.78 5.44 -466.79 -2.54 -15.32 16 7 C 0.15 2.94 6.11 85.63 0.52 3.46 16 8 C -0.16 -2.66 9.24 25.65 0.24 -2.42 16 9 C -0.13 -2.53 9.38 25.65 0.24 -2.29 16 10 C 0.09 1.86 6.12 85.56 0.52 2.38 16 11 N -0.68 -20.91 6.11 -521.98 -3.19 -24.10 16 12 C 0.07 2.16 6.17 85.56 0.53 2.68 16 13 C 0.44 20.67 7.82 87.66 0.69 21.35 16 14 O -0.63 -34.91 15.78 -3.07 -0.05 -34.95 16 15 N -0.57 -29.23 5.29 -306.98 -1.62 -30.86 16 16 C -0.34 -19.13 9.68 84.04 0.81 -18.32 16 17 H 0.08 4.74 7.16 -2.91 -0.02 4.71 16 18 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 19 N -0.92 -49.22 13.05 21.66 0.28 -48.94 16 20 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 24 C 0.09 1.51 2.30 31.10 0.07 1.58 16 25 H 0.06 1.15 8.06 -2.38 -0.02 1.13 16 26 C -0.14 -1.38 5.54 31.61 0.17 -1.21 16 27 C -0.15 -1.49 7.09 31.61 0.22 -1.27 16 28 C 0.03 0.51 7.64 72.48 0.55 1.07 16 29 O -0.40 -9.52 10.63 -135.98 -1.44 -10.96 16 30 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.09 0.37 7.11 -2.39 -0.02 0.36 16 32 H 0.08 0.45 7.56 -2.39 -0.02 0.43 16 33 H 0.41 5.23 7.88 -92.70 -0.73 4.50 16 34 H 0.05 1.20 7.79 -2.39 -0.02 1.18 16 35 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.14 1.75 7.84 -2.91 -0.02 1.73 16 37 H 0.11 2.22 7.84 -2.91 -0.02 2.19 16 38 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 1.69 7.79 -2.39 -0.02 1.67 16 40 H 0.34 11.29 8.42 -89.70 -0.76 10.53 16 41 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 43 H 0.40 19.11 7.90 -92.71 -0.73 18.38 16 44 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 45 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.09 0.68 7.64 -2.39 -0.02 0.66 16 47 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 50 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -78.32 414.45 -1.37 -79.69 By element: Atomic # 1 Polarization: 43.17 SS G_CDS: -1.26 Total: 41.91 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 6.27 Total: 16.87 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -7.07 Total: -119.22 kcal Atomic # 8 Polarization: -62.76 SS G_CDS: -1.34 Total: -64.10 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -78.32 -1.37 -79.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268586999.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.008 kcal (2) G-P(sol) polarization free energy of solvation -78.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds