Wall clock time and date at job start Tue Mar 31 2020 23:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47113 * 2 1 4 4 C 1.50692 * 109.47441 * 239.99926 * 2 1 3 5 5 O 1.21290 * 120.00079 * 239.99872 * 4 2 1 6 6 N 1.34775 * 120.00063 * 59.99994 * 4 2 1 7 7 C 1.46508 * 120.00056 * 180.02562 * 6 4 2 8 8 C 1.50696 * 109.47069 * 180.02562 * 7 6 4 9 9 C 1.31003 * 120.00223 * 127.15392 * 8 7 6 10 10 C 1.50694 * 119.99645 * 7.55806 * 9 8 7 11 11 N 1.46911 * 109.46895 * 127.00717 * 10 9 8 12 12 C 1.46903 * 110.99758 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47026 * 179.97438 * 12 11 10 14 14 O 1.21296 * 119.99560 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00277 * 179.97438 * 13 12 11 16 16 C 1.37093 * 120.00142 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00412 * 0.02562 * 16 15 13 18 18 C 1.38952 * 120.00120 * 180.02562 * 16 15 13 19 19 N 1.31411 * 119.99726 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00151 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47009 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47125 * 119.99740 * 20 18 16 23 23 H 1.48501 * 109.47263 * 239.99855 * 20 18 16 24 24 C 1.53001 * 109.47157 * 119.99838 * 2 1 3 25 25 H 1.09000 * 110.41744 * 62.30688 * 24 2 1 26 26 C 1.54485 * 110.37043 * 300.00547 * 24 2 1 27 27 C 1.54510 * 104.18064 * 217.25681 * 26 24 2 28 28 C 1.54483 * 104.06493 * 359.93134 * 27 26 24 29 29 O 1.44423 * 104.80024 * 23.97868 * 28 27 26 30 30 H 1.08997 * 109.47635 * 299.99897 * 1 2 3 31 31 H 1.09005 * 109.46925 * 60.00481 * 1 2 3 32 32 H 1.09003 * 109.47113 * 180.02562 * 1 2 3 33 33 H 0.96996 * 119.99984 * 359.97438 * 6 4 2 34 34 H 1.09004 * 109.46777 * 299.99544 * 7 6 4 35 35 H 1.09003 * 109.47206 * 59.99982 * 7 6 4 36 36 H 1.08011 * 120.00037 * 307.15395 * 8 7 6 37 37 H 1.08001 * 120.00115 * 187.55955 * 9 8 7 38 38 H 1.09003 * 109.47343 * 247.00017 * 10 9 8 39 39 H 1.09001 * 109.47577 * 7.00814 * 10 9 8 40 40 H 1.00893 * 111.00168 * 56.04672 * 11 10 9 41 41 H 1.08994 * 109.46952 * 300.00006 * 12 11 10 42 42 H 1.09005 * 109.47266 * 59.99927 * 12 11 10 43 43 H 0.96997 * 119.99972 * 0.02562 * 15 13 12 44 44 H 0.97002 * 119.99470 * 180.02562 * 19 18 16 45 45 H 1.09000 * 110.51267 * 98.54628 * 26 24 2 46 46 H 1.08997 * 110.50787 * 335.96430 * 26 24 2 47 47 H 1.09010 * 110.51132 * 118.57565 * 27 26 24 48 48 H 1.09001 * 110.50964 * 241.28298 * 27 26 24 49 49 H 1.09003 * 110.37024 * 142.80959 * 28 27 26 50 50 H 1.08998 * 110.37070 * 265.03450 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6965 -1.1190 6 7 1.7068 -0.2500 -2.4545 7 6 2.1948 -0.9409 -3.6507 8 6 1.6931 -0.2301 -4.8811 9 6 2.5364 0.1433 -5.8115 10 6 3.9793 -0.2846 -5.7362 11 7 4.3676 -0.9221 -7.0016 12 6 5.7717 -1.3528 -6.9649 13 6 6.1326 -2.0011 -8.2766 14 8 5.3020 -2.0947 -9.1556 15 7 7.3785 -2.4759 -8.4733 16 6 7.7067 -3.0662 -9.6663 17 1 6.9670 -3.1504 -10.4488 18 6 8.9910 -3.5562 -9.8690 19 7 9.8912 -3.4534 -8.9172 20 14 9.4384 -4.3599 -11.4948 21 1 8.2564 -4.3499 -12.3937 22 1 10.5492 -3.6065 -12.1303 23 1 9.8654 -5.7615 -11.2533 24 6 2.0400 -0.7212 1.2493 25 1 1.7191 -1.7629 1.2446 26 6 1.5364 -0.0093 2.5244 27 6 2.7217 -0.1147 3.5100 28 6 3.8034 -0.8801 2.7157 29 8 3.4819 -0.6394 1.3285 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.1488 0.5384 -2.5435 34 1 3.2848 -0.9412 -3.6508 35 1 1.8311 -1.9685 -3.6505 36 1 0.6382 -0.0286 -4.9960 37 1 2.1975 0.7579 -6.6324 38 1 4.6086 0.5880 -5.5611 39 1 4.1058 -0.9939 -4.9183 40 1 4.1988 -0.3069 -7.7832 41 1 6.4129 -0.4873 -6.7984 42 1 5.9110 -2.0693 -6.1554 43 1 8.0428 -2.4007 -7.7705 44 1 10.7879 -3.7951 -9.0588 45 1 0.6600 -0.5184 2.9253 46 1 1.3071 1.0352 2.3134 47 1 3.0798 0.8776 3.7843 48 1 2.4312 -0.6760 4.3981 49 1 4.7936 -0.4888 2.9492 50 1 3.7550 -1.9459 2.9389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268587000.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:00 Heat of formation + Delta-G solvation = -101.961976 kcal Electronic energy + Delta-G solvation = -28311.409722 eV Core-core repulsion = 24145.911627 eV Total energy + Delta-G solvation = -4165.498094 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.54267 -39.14845 -38.30691 -36.97290 -34.98744 -34.48829 -33.83778 -32.68320 -32.21734 -31.17232 -28.55489 -27.86783 -26.33318 -24.94345 -24.53776 -23.11670 -22.65220 -21.27103 -20.28880 -19.48591 -18.85731 -17.85975 -17.44887 -16.89108 -16.30587 -16.18088 -16.04914 -15.84878 -15.43809 -15.26039 -14.63924 -14.50680 -14.33989 -14.10552 -14.00428 -13.64017 -13.58311 -13.53525 -13.01292 -12.81434 -12.73505 -12.50866 -12.29271 -12.08726 -11.99920 -11.82158 -11.52941 -11.50063 -11.47863 -11.46184 -11.03043 -11.02592 -10.79003 -10.31588 -10.19382 -10.02183 -9.99964 -9.50804 -9.48487 -9.05903 -8.42572 -8.00861 -7.92282 -6.38408 -3.79202 1.84921 2.50166 3.09043 3.19076 3.29359 3.36892 3.48331 3.94461 4.09314 4.16321 4.21615 4.43284 4.46749 4.48910 4.55075 4.62030 4.72574 4.84472 4.87667 4.94768 5.06352 5.15323 5.16928 5.22013 5.23398 5.29382 5.31101 5.38041 5.41254 5.43262 5.56743 5.60581 5.61280 5.66738 5.68707 5.78085 5.84947 6.02372 6.20172 6.29849 6.39565 6.55394 6.63369 7.21008 7.30340 7.58666 7.67363 8.07701 8.09902 8.64731 9.21198 9.57898 10.09281 10.79449 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016476 B = 0.001602 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.992680 B =17471.674202 C =18861.624826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 H 0.104 0.896 4 C 0.515 3.485 5 O -0.522 6.522 6 N -0.728 5.728 7 C 0.140 3.860 8 C -0.183 4.183 9 C -0.111 4.111 10 C 0.069 3.931 11 N -0.663 5.663 12 C 0.049 3.951 13 C 0.442 3.558 14 O -0.583 6.583 15 N -0.564 5.564 16 C -0.299 4.299 17 H 0.104 0.896 18 C 0.021 3.979 19 N -0.901 5.901 20 Si 0.930 3.070 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.281 1.281 24 C 0.095 3.905 25 H 0.076 0.924 26 C -0.151 4.151 27 C -0.156 4.156 28 C 0.043 3.957 29 O -0.357 6.357 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.398 0.602 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.037 0.963 39 H 0.086 0.914 40 H 0.349 0.651 41 H 0.044 0.956 42 H 0.087 0.913 43 H 0.393 0.607 44 H 0.271 0.729 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.091 0.909 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.112 12.210 25.708 34.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.122 0.878 4 C 0.300 3.700 5 O -0.397 6.397 6 N -0.380 5.380 7 C 0.018 3.982 8 C -0.202 4.202 9 C -0.130 4.130 10 C -0.060 4.060 11 N -0.295 5.295 12 C -0.083 4.083 13 C 0.227 3.773 14 O -0.468 6.468 15 N -0.201 5.201 16 C -0.429 4.429 17 H 0.122 0.878 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.207 1.207 24 C 0.036 3.964 25 H 0.094 0.906 26 C -0.189 4.189 27 C -0.194 4.194 28 C -0.034 4.034 29 O -0.276 6.276 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.232 0.768 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.055 0.945 39 H 0.104 0.896 40 H 0.168 0.832 41 H 0.062 0.938 42 H 0.105 0.895 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.093 0.907 48 H 0.094 0.906 49 H 0.109 0.891 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.028 10.760 25.182 33.346 hybrid contribution 0.801 0.856 -0.314 1.214 sum -18.227 11.616 24.868 32.949 Atomic orbital electron populations 1.21775 0.91907 1.03276 1.03192 1.21392 0.97460 1.01329 0.92526 0.87765 1.20448 0.80378 0.84847 0.84303 1.90764 1.36549 1.25916 1.86486 1.46001 1.54312 1.32256 1.05469 1.20494 0.99903 0.96021 0.81792 1.22666 0.99291 1.02005 0.96246 1.22839 0.95002 0.96785 0.98421 1.21294 0.92949 0.97562 0.94151 1.60109 1.20404 1.45375 1.03617 1.21700 0.88625 0.99472 0.98524 1.19787 0.83522 0.84968 0.89023 1.90520 1.49211 1.61805 1.45227 1.41866 1.09956 1.51966 1.16267 1.19762 0.96694 1.33533 0.92866 0.87848 1.25274 0.95524 0.97984 0.99241 1.69627 1.04649 1.46923 1.33091 0.85790 0.78547 0.78552 0.81387 1.19217 1.20801 1.20743 1.22763 0.82107 0.98844 0.92645 0.90643 1.23028 0.98710 1.01882 0.95232 1.22956 0.95840 1.01703 0.98887 1.23392 0.98990 0.99336 0.81726 1.89279 1.20416 1.92529 1.25349 0.91006 0.91392 0.91667 0.76789 0.90020 0.90768 0.86492 0.86594 0.94493 0.89601 0.83166 0.93783 0.89464 0.77424 0.91932 0.90343 0.90437 0.90658 0.90560 0.89116 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.61 8.86 37.16 0.33 -0.28 16 2 C -0.11 -0.76 2.41 -91.78 -0.22 -0.98 16 3 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 4 C 0.51 5.57 7.05 -10.99 -0.08 5.50 16 5 O -0.52 -8.18 15.50 -8.05 -0.12 -8.31 16 6 N -0.73 -6.32 5.44 -61.47 -0.33 -6.66 16 7 C 0.14 1.48 5.76 -5.19 -0.03 1.45 16 8 C -0.18 -1.69 9.63 -36.03 -0.35 -2.04 16 9 C -0.11 -1.18 9.77 -36.03 -0.35 -1.53 16 10 C 0.07 0.89 5.77 -4.97 -0.03 0.86 16 11 N -0.66 -11.14 6.11 -116.33 -0.71 -11.85 16 12 C 0.05 0.91 6.17 -4.97 -0.03 0.88 16 13 C 0.44 10.77 7.82 -10.99 -0.09 10.69 16 14 O -0.58 -16.26 15.78 5.54 0.09 -16.17 16 15 N -0.56 -14.72 5.29 -10.96 -0.06 -14.78 16 16 C -0.30 -8.54 9.68 -14.93 -0.14 -8.68 16 17 H 0.10 3.09 7.16 -52.49 -0.38 2.72 16 18 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -25.06 13.05 55.50 0.72 -24.33 16 20 Si 0.93 21.43 29.55 -169.99 -5.02 16.41 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C 0.09 0.80 2.30 -25.95 -0.06 0.74 16 25 H 0.08 0.71 8.06 -51.93 -0.42 0.30 16 26 C -0.15 -0.79 5.54 -25.16 -0.14 -0.93 16 27 C -0.16 -0.84 7.09 -25.16 -0.18 -1.02 16 28 C 0.04 0.33 7.64 37.94 0.29 0.62 16 29 O -0.36 -4.08 10.63 -48.83 -0.52 -4.60 16 30 H 0.07 0.19 7.11 -51.93 -0.37 -0.18 16 31 H 0.07 0.20 7.56 -51.93 -0.39 -0.19 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.40 2.22 7.88 -40.82 -0.32 1.90 16 34 H 0.08 1.00 5.30 -51.93 -0.28 0.73 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.09 1.14 5.29 -51.93 -0.27 0.86 16 40 H 0.35 5.90 8.42 -39.30 -0.33 5.56 16 41 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.39 9.81 7.90 -40.82 -0.32 9.49 16 44 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.08 0.33 7.64 -51.93 -0.40 -0.06 16 47 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 48 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 409.96 15.07 6.18 6.18 Total: -1.00 -36.07 409.96 -9.06 -45.13 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -8.11 Total: 13.21 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -1.17 Total: 5.77 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: -0.38 Total: -57.62 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.56 Total: -29.07 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.07 -9.06 -45.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268587000.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.833 kcal (2) G-P(sol) polarization free energy of solvation -36.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds