Wall clock time and date at job start Tue Mar 31 2020 23:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47113 * 2 1 4 4 C 1.50692 * 109.47441 * 239.99926 * 2 1 3 5 5 O 1.21290 * 120.00079 * 239.99872 * 4 2 1 6 6 N 1.34775 * 120.00063 * 59.99994 * 4 2 1 7 7 C 1.46508 * 120.00056 * 180.02562 * 6 4 2 8 8 C 1.50696 * 109.47069 * 180.02562 * 7 6 4 9 9 C 1.31003 * 120.00223 * 127.15392 * 8 7 6 10 10 C 1.50694 * 119.99645 * 7.55806 * 9 8 7 11 11 N 1.46911 * 109.46895 * 127.00717 * 10 9 8 12 12 C 1.46903 * 110.99758 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47026 * 179.97438 * 12 11 10 14 14 O 1.21296 * 119.99560 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00277 * 179.97438 * 13 12 11 16 16 C 1.37093 * 120.00142 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00412 * 0.02562 * 16 15 13 18 18 C 1.38952 * 120.00120 * 180.02562 * 16 15 13 19 19 N 1.31411 * 119.99726 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00151 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47009 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47125 * 119.99740 * 20 18 16 23 23 H 1.48501 * 109.47263 * 239.99855 * 20 18 16 24 24 C 1.53001 * 109.47157 * 119.99838 * 2 1 3 25 25 H 1.09000 * 110.41744 * 62.30688 * 24 2 1 26 26 C 1.54485 * 110.37043 * 300.00547 * 24 2 1 27 27 C 1.54510 * 104.18064 * 217.25681 * 26 24 2 28 28 C 1.54483 * 104.06493 * 359.93134 * 27 26 24 29 29 O 1.44423 * 104.80024 * 23.97868 * 28 27 26 30 30 H 1.08997 * 109.47635 * 299.99897 * 1 2 3 31 31 H 1.09005 * 109.46925 * 60.00481 * 1 2 3 32 32 H 1.09003 * 109.47113 * 180.02562 * 1 2 3 33 33 H 0.96996 * 119.99984 * 359.97438 * 6 4 2 34 34 H 1.09004 * 109.46777 * 299.99544 * 7 6 4 35 35 H 1.09003 * 109.47206 * 59.99982 * 7 6 4 36 36 H 1.08011 * 120.00037 * 307.15395 * 8 7 6 37 37 H 1.08001 * 120.00115 * 187.55955 * 9 8 7 38 38 H 1.09003 * 109.47343 * 247.00017 * 10 9 8 39 39 H 1.09001 * 109.47577 * 7.00814 * 10 9 8 40 40 H 1.00893 * 111.00168 * 56.04672 * 11 10 9 41 41 H 1.08994 * 109.46952 * 300.00006 * 12 11 10 42 42 H 1.09005 * 109.47266 * 59.99927 * 12 11 10 43 43 H 0.96997 * 119.99972 * 0.02562 * 15 13 12 44 44 H 0.97002 * 119.99470 * 180.02562 * 19 18 16 45 45 H 1.09000 * 110.51267 * 98.54628 * 26 24 2 46 46 H 1.08997 * 110.50787 * 335.96430 * 26 24 2 47 47 H 1.09010 * 110.51132 * 118.57565 * 27 26 24 48 48 H 1.09001 * 110.50964 * 241.28298 * 27 26 24 49 49 H 1.09003 * 110.37024 * 142.80959 * 28 27 26 50 50 H 1.08998 * 110.37070 * 265.03450 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6965 -1.1190 6 7 1.7068 -0.2500 -2.4545 7 6 2.1948 -0.9409 -3.6507 8 6 1.6931 -0.2301 -4.8811 9 6 2.5364 0.1433 -5.8115 10 6 3.9793 -0.2846 -5.7362 11 7 4.3676 -0.9221 -7.0016 12 6 5.7717 -1.3528 -6.9649 13 6 6.1326 -2.0011 -8.2766 14 8 5.3020 -2.0947 -9.1556 15 7 7.3785 -2.4759 -8.4733 16 6 7.7067 -3.0662 -9.6663 17 1 6.9670 -3.1504 -10.4488 18 6 8.9910 -3.5562 -9.8690 19 7 9.8912 -3.4534 -8.9172 20 14 9.4384 -4.3599 -11.4948 21 1 8.2564 -4.3499 -12.3937 22 1 10.5492 -3.6065 -12.1303 23 1 9.8654 -5.7615 -11.2533 24 6 2.0400 -0.7212 1.2493 25 1 1.7191 -1.7629 1.2446 26 6 1.5364 -0.0093 2.5244 27 6 2.7217 -0.1147 3.5100 28 6 3.8034 -0.8801 2.7157 29 8 3.4819 -0.6394 1.3285 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.1488 0.5384 -2.5435 34 1 3.2848 -0.9412 -3.6508 35 1 1.8311 -1.9685 -3.6505 36 1 0.6382 -0.0286 -4.9960 37 1 2.1975 0.7579 -6.6324 38 1 4.6086 0.5880 -5.5611 39 1 4.1058 -0.9939 -4.9183 40 1 4.1988 -0.3069 -7.7832 41 1 6.4129 -0.4873 -6.7984 42 1 5.9110 -2.0693 -6.1554 43 1 8.0428 -2.4007 -7.7705 44 1 10.7879 -3.7951 -9.0588 45 1 0.6600 -0.5184 2.9253 46 1 1.3071 1.0352 2.3134 47 1 3.0798 0.8776 3.7843 48 1 2.4312 -0.6760 4.3981 49 1 4.7936 -0.4888 2.9492 50 1 3.7550 -1.9459 2.9389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268587000.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:00 Heat of formation + Delta-G solvation = -130.075149 kcal Electronic energy + Delta-G solvation = -28312.628800 eV Core-core repulsion = 24145.911627 eV Total energy + Delta-G solvation = -4166.717173 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.27612 -40.20967 -39.85222 -38.06440 -36.26750 -35.76138 -35.12107 -33.69511 -33.24636 -32.75613 -29.47947 -28.81699 -27.43105 -26.38813 -25.29258 -24.50290 -23.26371 -21.86684 -21.22972 -20.98949 -20.06926 -19.71962 -18.29305 -17.88068 -17.41649 -17.10647 -16.90992 -16.72863 -16.65160 -16.40887 -16.17754 -15.94429 -15.33494 -15.32093 -15.19950 -14.73984 -14.54431 -14.33193 -14.09718 -13.95911 -13.55916 -13.53990 -13.25949 -13.22204 -12.98167 -12.87913 -12.75051 -12.59486 -12.48584 -12.42249 -12.11657 -12.03687 -11.99543 -11.68794 -11.53378 -11.44097 -10.85559 -10.70364 -10.39581 -10.35320 -10.04279 -9.94997 -9.29958 -8.48508 -5.97860 1.03092 1.35899 1.41024 1.55942 1.68091 2.01645 2.27973 2.34996 2.93401 2.98999 3.18385 3.58285 3.59039 3.66966 3.73997 3.91109 4.00198 4.05550 4.11883 4.19042 4.22526 4.29675 4.37027 4.41746 4.44953 4.46365 4.51658 4.57643 4.67484 4.75327 4.79078 4.85042 4.88064 4.96005 4.97550 5.02306 5.14873 5.21812 5.28604 5.39168 5.40185 5.56114 5.79175 5.86495 5.96738 6.05437 6.37533 6.57210 6.59469 7.09967 7.30894 7.52943 8.07755 8.69222 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016476 B = 0.001602 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.992680 B =17471.674202 C =18861.624826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 H 0.120 0.880 4 C 0.507 3.493 5 O -0.581 6.581 6 N -0.712 5.712 7 C 0.139 3.861 8 C -0.160 4.160 9 C -0.126 4.126 10 C 0.071 3.929 11 N -0.677 5.677 12 C 0.063 3.937 13 C 0.438 3.562 14 O -0.622 6.622 15 N -0.573 5.573 16 C -0.335 4.335 17 H 0.080 0.920 18 C -0.015 4.015 19 N -0.921 5.921 20 Si 0.996 3.004 21 H -0.272 1.272 22 H -0.269 1.269 23 H -0.271 1.271 24 C 0.085 3.915 25 H 0.053 0.947 26 C -0.142 4.142 27 C -0.150 4.150 28 C 0.031 3.969 29 O -0.397 6.397 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.417 0.583 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.147 0.853 37 H 0.131 0.869 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.347 0.653 41 H 0.068 0.932 42 H 0.098 0.902 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.084 0.916 48 H 0.091 0.909 49 H 0.094 0.906 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.659 13.968 26.763 36.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.120 4.120 3 H 0.138 0.862 4 C 0.295 3.705 5 O -0.460 6.460 6 N -0.365 5.365 7 C 0.016 3.984 8 C -0.179 4.179 9 C -0.146 4.146 10 C -0.057 4.057 11 N -0.310 5.310 12 C -0.069 4.069 13 C 0.226 3.774 14 O -0.508 6.508 15 N -0.210 5.210 16 C -0.465 4.465 17 H 0.098 0.902 18 C -0.214 4.214 19 N -0.562 5.562 20 Si 0.820 3.180 21 H -0.197 1.197 22 H -0.194 1.194 23 H -0.196 1.196 24 C 0.027 3.973 25 H 0.071 0.929 26 C -0.180 4.180 27 C -0.188 4.188 28 C -0.045 4.045 29 O -0.316 6.316 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.254 0.746 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.165 0.835 37 H 0.149 0.851 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.166 0.834 41 H 0.086 0.914 42 H 0.116 0.884 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.103 0.897 48 H 0.109 0.891 49 H 0.112 0.888 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.598 12.568 26.266 35.667 hybrid contribution 1.269 0.290 -0.587 1.428 sum -19.329 12.858 25.679 34.617 Atomic orbital electron populations 1.21813 0.89214 1.03312 1.05282 1.21463 0.99455 1.01123 0.89921 0.86170 1.21231 0.79377 0.84222 0.85710 1.90737 1.39250 1.28629 1.87341 1.45855 1.53788 1.32397 1.04440 1.20368 0.98864 0.95853 0.83328 1.22773 1.00429 1.00031 0.94710 1.22826 0.93753 0.98256 0.99737 1.21312 0.94901 0.97571 0.91898 1.60098 1.19095 1.46477 1.05315 1.21545 0.90369 1.00126 0.94904 1.20799 0.82401 0.83704 0.90546 1.90484 1.50103 1.63034 1.47205 1.41943 1.10797 1.52414 1.15849 1.19741 0.97152 1.35914 0.93681 0.90171 1.26102 0.94847 0.97789 1.02678 1.69690 1.05051 1.46909 1.34552 0.84822 0.78166 0.77969 0.77062 1.19674 1.19433 1.19648 1.22925 0.81058 0.98412 0.94911 0.92903 1.23025 0.99019 1.02632 0.93283 1.22952 0.94907 1.01950 0.98987 1.23572 1.00334 0.99584 0.81055 1.89238 1.22389 1.92670 1.27324 0.88633 0.89608 0.92657 0.74583 0.92014 0.92350 0.83519 0.85093 0.93353 0.90294 0.83353 0.91377 0.88407 0.77010 0.91259 0.88606 0.88694 0.89722 0.89079 0.88793 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 8.86 71.98 0.64 -0.16 16 2 C -0.10 -1.29 2.41 -11.54 -0.03 -1.32 16 3 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 4 C 0.51 10.99 7.05 87.65 0.62 11.61 16 5 O -0.58 -19.23 15.50 9.94 0.15 -19.08 16 6 N -0.71 -11.58 5.44 -466.77 -2.54 -14.12 16 7 C 0.14 2.89 5.76 85.63 0.49 3.38 16 8 C -0.16 -2.63 9.63 25.64 0.25 -2.38 16 9 C -0.13 -2.47 9.77 25.64 0.25 -2.22 16 10 C 0.07 1.77 5.77 85.55 0.49 2.27 16 11 N -0.68 -22.51 6.11 -521.96 -3.19 -25.70 16 12 C 0.06 2.32 6.17 85.56 0.53 2.84 16 13 C 0.44 21.79 7.82 87.66 0.69 22.47 16 14 O -0.62 -35.57 15.78 -3.08 -0.05 -35.62 16 15 N -0.57 -30.59 5.29 -306.99 -1.62 -32.22 16 16 C -0.34 -19.62 9.68 84.04 0.81 -18.81 16 17 H 0.08 4.98 7.16 -2.91 -0.02 4.96 16 18 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 19 N -0.92 -51.07 13.05 21.66 0.28 -50.79 16 20 Si 1.00 43.90 29.55 68.60 2.03 45.93 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 24 C 0.08 1.41 2.30 31.10 0.07 1.48 16 25 H 0.05 1.07 8.06 -2.39 -0.02 1.05 16 26 C -0.14 -1.18 5.54 31.61 0.17 -1.01 16 27 C -0.15 -1.37 7.09 31.61 0.22 -1.15 16 28 C 0.03 0.50 7.64 72.49 0.55 1.05 16 29 O -0.40 -9.39 10.63 -135.98 -1.44 -10.83 16 30 H 0.09 0.14 7.11 -2.39 -0.02 0.13 16 31 H 0.09 0.20 7.56 -2.38 -0.02 0.18 16 32 H 0.05 0.45 8.14 -2.39 -0.02 0.44 16 33 H 0.42 3.57 7.88 -92.71 -0.73 2.84 16 34 H 0.06 1.56 5.30 -2.39 -0.01 1.54 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.15 1.60 8.06 -2.90 -0.02 1.58 16 37 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 2.09 5.29 -2.39 -0.01 2.08 16 40 H 0.35 11.64 8.42 -89.70 -0.76 10.89 16 41 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.10 3.40 8.14 -2.38 -0.02 3.38 16 43 H 0.40 20.17 7.90 -92.71 -0.73 19.44 16 44 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 45 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.09 0.48 7.64 -2.39 -0.02 0.46 16 47 H 0.08 0.62 8.14 -2.38 -0.02 0.61 16 48 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -81.69 409.96 -1.40 -83.09 By element: Atomic # 1 Polarization: 42.86 SS G_CDS: -1.25 Total: 41.61 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: 6.23 Total: 17.73 kcal Atomic # 7 Polarization: -115.76 SS G_CDS: -7.07 Total: -122.83 kcal Atomic # 8 Polarization: -64.19 SS G_CDS: -1.34 Total: -65.53 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -81.69 -1.40 -83.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268587000.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.985 kcal (2) G-P(sol) polarization free energy of solvation -81.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds