Wall clock time and date at job start Tue Mar 31 2020 22:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.57699 * 2 1 4 4 C 1.53093 * 109.52099 * 120.16065 * 2 1 3 5 5 O 1.42902 * 109.41908 * 177.51397 * 4 2 1 6 6 C 1.42901 * 114.09331 * 298.83936 * 5 4 2 7 7 C 1.53100 * 109.41713 * 61.15900 * 6 5 4 8 8 C 1.53173 * 109.52198 * 239.84091 * 2 1 3 9 9 H 1.08998 * 109.61893 * 303.02959 * 8 2 1 10 10 C 1.50703 * 109.54511 * 63.25143 * 8 2 1 11 11 O 1.21283 * 119.99488 * 359.55246 * 10 8 2 12 12 N 1.34777 * 120.00290 * 179.55686 * 10 8 2 13 13 C 1.46498 * 119.99828 * 180.27728 * 12 10 8 14 14 C 1.52996 * 109.47059 * 179.72339 * 13 12 10 15 15 C 1.53938 * 113.73529 * 271.72614 * 14 13 12 16 16 N 1.47954 * 86.18379 * 221.92017 * 15 14 13 17 17 C 1.46901 * 111.00436 * 137.57980 * 16 15 14 18 18 C 1.50697 * 109.47162 * 90.63881 * 17 16 15 19 19 O 1.21288 * 120.00193 * 0.02562 * 18 17 16 20 20 N 1.34781 * 119.99914 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99780 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00248 * 0.02562 * 21 20 18 23 23 C 1.38945 * 120.00086 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99801 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00393 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46947 * 60.00228 * 25 23 21 27 27 H 1.48494 * 109.47389 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.46808 * 300.00437 * 25 23 21 29 29 C 1.47962 * 90.76427 * 24.68735 * 16 15 14 30 30 H 1.08997 * 109.47752 * 180.15160 * 1 2 3 31 31 H 1.08998 * 109.47301 * 300.16036 * 1 2 3 32 32 H 1.09008 * 109.46874 * 60.15462 * 1 2 3 33 33 H 1.09001 * 109.48251 * 57.52691 * 4 2 1 34 34 H 1.09004 * 109.47976 * 297.49625 * 4 2 1 35 35 H 1.09000 * 109.48367 * 301.17380 * 6 5 4 36 36 H 1.09004 * 109.48727 * 181.14288 * 6 5 4 37 37 H 1.08995 * 109.52508 * 182.48069 * 7 6 5 38 38 H 1.09005 * 109.57153 * 62.31899 * 7 6 5 39 39 H 0.97001 * 119.99727 * 359.97438 * 12 10 8 40 40 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 41 41 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 42 42 H 1.09003 * 112.94144 * 43.42638 * 14 13 12 43 43 H 1.09008 * 113.75866 * 336.23853 * 15 14 13 44 44 H 1.09001 * 113.76371 * 107.59482 * 15 14 13 45 45 H 1.09001 * 109.47671 * 210.64547 * 17 16 15 46 46 H 1.09003 * 109.46719 * 330.64231 * 17 16 15 47 47 H 0.96997 * 119.99897 * 359.97438 * 20 18 17 48 48 H 0.97007 * 119.99833 * 179.97438 * 24 23 21 49 49 H 1.08996 * 113.76325 * 220.99365 * 29 16 15 50 50 H 1.09002 * 113.86097 * 89.63659 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0415 -0.7250 1.2476 5 8 3.4694 -0.7744 1.2164 6 6 4.0042 -1.4818 0.0958 7 6 3.5716 -0.7872 -1.1982 8 6 2.0418 -0.7253 -1.2482 9 1 1.6367 -1.7368 -1.2757 10 6 1.6079 0.0252 -2.4810 11 8 0.9465 1.0362 -2.3739 12 7 1.9546 -0.4271 -3.7023 13 6 1.5378 0.3058 -4.9003 14 6 2.0639 -0.4108 -6.1454 15 6 3.4756 0.0354 -6.5671 16 7 2.9626 0.0073 -7.9546 17 6 3.4302 1.1755 -8.7126 18 6 4.7321 0.8433 -9.3950 19 8 5.2220 -0.2584 -9.2633 20 7 5.3521 1.7704 -10.1517 21 6 6.5368 1.4683 -10.7721 22 1 6.9730 0.4873 -10.6548 23 6 7.1757 2.4239 -11.5526 24 7 6.6447 3.6174 -11.6958 25 14 8.7896 2.0121 -12.3985 26 1 8.5852 0.8700 -13.3255 27 1 9.2626 3.1931 -13.1643 28 1 9.8040 1.6457 -11.3778 29 6 1.5798 0.2095 -7.4685 30 1 -0.3634 -1.0276 0.0027 31 1 -0.3634 0.5163 0.8885 32 1 -0.3633 0.5115 -0.8914 33 1 1.6430 -1.7393 1.2677 34 1 1.7158 -0.1886 2.1389 35 1 3.6314 -2.5060 0.1008 36 1 5.0925 -1.4907 0.1572 37 1 3.9417 -1.3501 -2.0550 38 1 3.9780 0.2239 -1.2234 39 1 2.4838 -1.2355 -3.7879 40 1 0.4493 0.3498 -4.9391 41 1 1.9412 1.3178 -4.8659 42 1 1.9403 -1.4928 -6.0970 43 1 3.7435 1.0327 -6.2181 44 1 4.2484 -0.7074 -6.3695 45 1 2.6856 1.4445 -9.4618 46 1 3.5802 2.0138 -8.0322 47 1 4.9602 2.6514 -10.2574 48 1 7.0910 4.2847 -12.2404 49 1 0.8379 -0.3942 -7.9910 50 1 1.2914 1.2572 -7.3826 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268874735.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:55 Heat of formation + Delta-G solvation = -93.058118 kcal Electronic energy + Delta-G solvation = -29286.729531 eV Core-core repulsion = 25121.617537 eV Total energy + Delta-G solvation = -4165.111994 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.91635 -40.07549 -38.84267 -37.74079 -35.19861 -34.60570 -33.88324 -32.68377 -31.33915 -30.76079 -28.06090 -27.00138 -26.10446 -25.96884 -24.73926 -22.77739 -22.62264 -21.35873 -20.40704 -19.57568 -19.18579 -17.92750 -17.60365 -16.71710 -16.43509 -16.25836 -15.99692 -15.67064 -15.30885 -15.16566 -15.00142 -14.75515 -14.56266 -14.46093 -14.19162 -13.66883 -13.60582 -13.15404 -13.10869 -12.75453 -12.60880 -12.52802 -12.32365 -12.18582 -11.86740 -11.61945 -11.49141 -11.39634 -11.35358 -11.07636 -11.01275 -10.86091 -10.71292 -10.69919 -10.43939 -10.28822 -10.20001 -9.64897 -9.48507 -9.32009 -8.74652 -8.17960 -7.95287 -6.40699 -3.81588 2.34042 2.84142 3.20253 3.25763 3.30068 3.46299 3.87238 3.93223 4.09314 4.18648 4.23564 4.25929 4.36477 4.46023 4.55478 4.73760 4.76848 4.95091 4.97558 5.02472 5.04949 5.10373 5.18467 5.20618 5.23958 5.30911 5.31520 5.36041 5.46864 5.47778 5.49295 5.61270 5.66260 5.66715 5.71000 5.74281 5.90498 5.92507 5.98161 6.11765 6.25042 6.27630 6.56039 6.75980 7.14052 7.20513 7.55552 7.94455 8.06700 8.63172 9.19198 9.55681 10.08126 10.77075 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017960 B = 0.001829 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.615760 B =15305.707610 C =16170.991124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 H 0.087 0.913 4 C 0.065 3.935 5 O -0.382 6.382 6 C 0.062 3.938 7 C -0.150 4.150 8 C -0.106 4.106 9 H 0.098 0.902 10 C 0.518 3.482 11 O -0.535 6.535 12 N -0.726 5.726 13 C 0.128 3.872 14 C -0.131 4.131 15 C 0.016 3.984 16 N -0.449 5.449 17 C 0.010 3.990 18 C 0.446 3.554 19 O -0.577 6.577 20 N -0.567 5.567 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.274 1.274 29 C 0.009 3.991 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.402 0.598 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.105 0.895 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.058 0.942 47 H 0.391 0.609 48 H 0.272 0.728 49 H 0.091 0.909 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.862 -8.040 23.130 27.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.125 4.125 3 H 0.105 0.895 4 C -0.012 4.012 5 O -0.300 6.300 6 C -0.014 4.014 7 C -0.188 4.188 8 C -0.127 4.127 9 H 0.116 0.884 10 C 0.305 3.695 11 O -0.411 6.411 12 N -0.378 5.378 13 C 0.004 3.996 14 C -0.150 4.150 15 C -0.113 4.113 16 N -0.171 5.171 17 C -0.122 4.122 18 C 0.231 3.769 19 O -0.460 6.460 20 N -0.204 5.204 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.121 4.121 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.071 0.929 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.236 0.764 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.123 0.877 43 H 0.087 0.913 44 H 0.109 0.891 45 H 0.106 0.894 46 H 0.076 0.924 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.110 0.890 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.657 -8.330 22.846 27.414 hybrid contribution 0.528 0.752 -0.582 1.087 sum -12.130 -7.579 22.264 26.462 Atomic orbital electron populations 1.21913 0.93811 1.01640 1.03747 1.21579 0.97105 1.00807 0.92975 0.89456 1.22722 0.80849 0.99656 0.97974 1.87962 1.20410 1.76354 1.45314 1.22584 0.99546 0.94408 0.84910 1.22236 0.93576 1.03377 0.99569 1.21455 0.97138 1.00620 0.93501 0.88436 1.20516 0.79412 0.85158 0.84455 1.90670 1.38701 1.25152 1.86625 1.46044 1.56228 1.29769 1.05753 1.21445 0.99928 0.95595 0.82636 1.23289 0.97193 1.01352 0.93161 1.24043 0.96357 1.01344 0.89564 1.68378 1.02102 1.36169 1.10419 1.22485 0.98256 0.92591 0.98911 1.19684 0.86755 0.86193 0.84253 1.90512 1.67356 1.22732 1.65398 1.41876 1.21523 1.13681 1.43330 1.19639 0.97821 1.00198 1.25172 0.88034 1.25259 0.99879 0.95013 0.97867 1.69608 1.40201 1.04218 1.40417 0.85917 0.81364 0.77695 0.79233 1.19903 1.20985 1.19942 1.23954 0.94167 1.00256 0.93729 0.93246 0.92536 0.89960 0.93064 0.88515 0.92871 0.88302 0.90026 0.90176 0.76400 0.91121 0.91234 0.87658 0.91314 0.89092 0.89395 0.92441 0.77554 0.91853 0.89046 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.92 37.16 0.33 -0.84 16 2 C -0.11 -0.82 2.05 -90.48 -0.19 -1.01 16 3 H 0.09 0.86 8.03 -51.93 -0.42 0.44 16 4 C 0.06 0.44 6.13 37.21 0.23 0.67 16 5 O -0.38 -3.26 10.77 -35.23 -0.38 -3.64 16 6 C 0.06 0.39 6.84 37.21 0.25 0.64 16 7 C -0.15 -0.95 5.29 -26.59 -0.14 -1.09 16 8 C -0.11 -0.75 2.11 -91.59 -0.19 -0.94 16 9 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 10 C 0.52 4.97 6.88 -10.98 -0.08 4.90 16 11 O -0.53 -7.05 13.86 5.55 0.08 -6.97 16 12 N -0.73 -5.87 5.46 -60.30 -0.33 -6.20 16 13 C 0.13 1.17 5.53 -4.04 -0.02 1.15 16 14 C -0.13 -1.28 3.94 -89.69 -0.35 -1.63 16 15 C 0.02 0.21 7.51 -2.77 -0.02 0.19 16 16 N -0.45 -7.16 5.65 -239.72 -1.35 -8.51 16 17 C 0.01 0.17 5.28 -4.98 -0.03 0.14 16 18 C 0.45 10.68 7.83 -10.98 -0.09 10.59 16 19 O -0.58 -15.92 16.01 5.55 0.09 -15.83 16 20 N -0.57 -14.53 5.29 -10.96 -0.06 -14.59 16 21 C -0.30 -8.41 9.68 -14.94 -0.14 -8.55 16 22 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.73 13.05 55.50 0.72 -24.00 16 25 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 29 C 0.01 0.10 7.51 -2.76 -0.02 0.08 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.83 5.79 -51.92 -0.30 0.53 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.39 7.67 -51.93 -0.40 -0.01 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.40 2.38 7.96 -40.82 -0.32 2.06 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.74 7.84 -51.93 -0.41 0.33 16 42 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.07 0.91 7.23 -51.92 -0.38 0.53 16 44 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 46 H 0.06 0.91 7.38 -51.93 -0.38 0.53 16 47 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 48 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 49 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 50 H 0.07 0.72 7.88 -51.93 -0.41 0.31 16 LS Contribution 400.89 15.07 6.04 6.04 Total: -1.00 -34.57 400.89 -9.11 -43.67 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -8.34 Total: 9.10 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -0.55 Total: 4.77 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -1.02 Total: -53.30 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.21 Total: -26.44 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.57 -9.11 -43.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268874735.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.386 kcal (2) G-P(sol) polarization free energy of solvation -34.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds