Wall clock time and date at job start Tue Mar 31 2020 22:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.57699 * 2 1 4 4 C 1.53093 * 109.52099 * 120.16065 * 2 1 3 5 5 O 1.42902 * 109.41908 * 177.51397 * 4 2 1 6 6 C 1.42901 * 114.09331 * 298.83936 * 5 4 2 7 7 C 1.53100 * 109.41713 * 61.15900 * 6 5 4 8 8 C 1.53173 * 109.52198 * 239.84091 * 2 1 3 9 9 H 1.08998 * 109.61893 * 303.02959 * 8 2 1 10 10 C 1.50703 * 109.54511 * 63.25143 * 8 2 1 11 11 O 1.21283 * 119.99488 * 359.55246 * 10 8 2 12 12 N 1.34777 * 120.00290 * 179.55686 * 10 8 2 13 13 C 1.46498 * 119.99828 * 180.27728 * 12 10 8 14 14 C 1.52996 * 109.47059 * 179.72339 * 13 12 10 15 15 C 1.53938 * 113.73529 * 271.72614 * 14 13 12 16 16 N 1.47954 * 86.18379 * 221.92017 * 15 14 13 17 17 C 1.46901 * 111.00436 * 137.57980 * 16 15 14 18 18 C 1.50697 * 109.47162 * 90.63881 * 17 16 15 19 19 O 1.21288 * 120.00193 * 0.02562 * 18 17 16 20 20 N 1.34781 * 119.99914 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99780 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00248 * 0.02562 * 21 20 18 23 23 C 1.38945 * 120.00086 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99801 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00393 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46947 * 60.00228 * 25 23 21 27 27 H 1.48494 * 109.47389 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.46808 * 300.00437 * 25 23 21 29 29 C 1.47962 * 90.76427 * 24.68735 * 16 15 14 30 30 H 1.08997 * 109.47752 * 180.15160 * 1 2 3 31 31 H 1.08998 * 109.47301 * 300.16036 * 1 2 3 32 32 H 1.09008 * 109.46874 * 60.15462 * 1 2 3 33 33 H 1.09001 * 109.48251 * 57.52691 * 4 2 1 34 34 H 1.09004 * 109.47976 * 297.49625 * 4 2 1 35 35 H 1.09000 * 109.48367 * 301.17380 * 6 5 4 36 36 H 1.09004 * 109.48727 * 181.14288 * 6 5 4 37 37 H 1.08995 * 109.52508 * 182.48069 * 7 6 5 38 38 H 1.09005 * 109.57153 * 62.31899 * 7 6 5 39 39 H 0.97001 * 119.99727 * 359.97438 * 12 10 8 40 40 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 41 41 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 42 42 H 1.09003 * 112.94144 * 43.42638 * 14 13 12 43 43 H 1.09008 * 113.75866 * 336.23853 * 15 14 13 44 44 H 1.09001 * 113.76371 * 107.59482 * 15 14 13 45 45 H 1.09001 * 109.47671 * 210.64547 * 17 16 15 46 46 H 1.09003 * 109.46719 * 330.64231 * 17 16 15 47 47 H 0.96997 * 119.99897 * 359.97438 * 20 18 17 48 48 H 0.97007 * 119.99833 * 179.97438 * 24 23 21 49 49 H 1.08996 * 113.76325 * 220.99365 * 29 16 15 50 50 H 1.09002 * 113.86097 * 89.63659 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0415 -0.7250 1.2476 5 8 3.4694 -0.7744 1.2164 6 6 4.0042 -1.4818 0.0958 7 6 3.5716 -0.7872 -1.1982 8 6 2.0418 -0.7253 -1.2482 9 1 1.6367 -1.7368 -1.2757 10 6 1.6079 0.0252 -2.4810 11 8 0.9465 1.0362 -2.3739 12 7 1.9546 -0.4271 -3.7023 13 6 1.5378 0.3058 -4.9003 14 6 2.0639 -0.4108 -6.1454 15 6 3.4756 0.0354 -6.5671 16 7 2.9626 0.0073 -7.9546 17 6 3.4302 1.1755 -8.7126 18 6 4.7321 0.8433 -9.3950 19 8 5.2220 -0.2584 -9.2633 20 7 5.3521 1.7704 -10.1517 21 6 6.5368 1.4683 -10.7721 22 1 6.9730 0.4873 -10.6548 23 6 7.1757 2.4239 -11.5526 24 7 6.6447 3.6174 -11.6958 25 14 8.7896 2.0121 -12.3985 26 1 8.5852 0.8700 -13.3255 27 1 9.2626 3.1931 -13.1643 28 1 9.8040 1.6457 -11.3778 29 6 1.5798 0.2095 -7.4685 30 1 -0.3634 -1.0276 0.0027 31 1 -0.3634 0.5163 0.8885 32 1 -0.3633 0.5115 -0.8914 33 1 1.6430 -1.7393 1.2677 34 1 1.7158 -0.1886 2.1389 35 1 3.6314 -2.5060 0.1008 36 1 5.0925 -1.4907 0.1572 37 1 3.9417 -1.3501 -2.0550 38 1 3.9780 0.2239 -1.2234 39 1 2.4838 -1.2355 -3.7879 40 1 0.4493 0.3498 -4.9391 41 1 1.9412 1.3178 -4.8659 42 1 1.9403 -1.4928 -6.0970 43 1 3.7435 1.0327 -6.2181 44 1 4.2484 -0.7074 -6.3695 45 1 2.6856 1.4445 -9.4618 46 1 3.5802 2.0138 -8.0322 47 1 4.9602 2.6514 -10.2574 48 1 7.0910 4.2847 -12.2404 49 1 0.8379 -0.3942 -7.9910 50 1 1.2914 1.2572 -7.3826 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268874735.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:54 Heat of formation + Delta-G solvation = -120.752805 kcal Electronic energy + Delta-G solvation = -29287.930463 eV Core-core repulsion = 25121.617537 eV Total energy + Delta-G solvation = -4166.312926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.65685 -41.11853 -39.72852 -39.36827 -36.09247 -35.83471 -35.26361 -33.37911 -33.21023 -31.96090 -29.04646 -27.77869 -27.09943 -26.94378 -26.20726 -23.85789 -23.27459 -22.05102 -21.14308 -21.00501 -20.37750 -19.89398 -18.38841 -17.81799 -17.44909 -17.05543 -16.80647 -16.60850 -16.53807 -16.45106 -16.01910 -15.94745 -15.52246 -15.48690 -15.07355 -15.05679 -14.85344 -14.35135 -14.01458 -13.73792 -13.66331 -13.51154 -13.34039 -13.06414 -12.98081 -12.82587 -12.67142 -12.45378 -12.42864 -12.33280 -12.13772 -11.97976 -11.82714 -11.66642 -11.57079 -11.50026 -11.41640 -10.92544 -10.38363 -10.30321 -10.07820 -10.02293 -9.64340 -8.47363 -5.96435 1.38833 1.40295 1.51538 1.60913 2.04931 2.14710 2.27924 2.77846 2.98133 3.18618 3.31595 3.44391 3.52980 3.66082 3.72094 3.72829 3.92604 4.14533 4.17765 4.24710 4.26415 4.26614 4.37556 4.46954 4.47085 4.51146 4.51648 4.60689 4.63811 4.66078 4.71101 4.74397 4.82182 4.82452 4.86899 4.95221 5.08761 5.13421 5.21877 5.32658 5.36354 5.38877 5.43236 5.53610 5.89447 6.08119 6.27172 6.53943 6.59741 7.11947 7.24777 7.55615 8.11883 8.69815 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017960 B = 0.001829 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.615760 B =15305.707610 C =16170.991124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 H 0.057 0.943 4 C 0.066 3.934 5 O -0.406 6.406 6 C 0.059 3.941 7 C -0.146 4.146 8 C -0.100 4.100 9 H 0.124 0.876 10 C 0.515 3.485 11 O -0.575 6.575 12 N -0.717 5.717 13 C 0.135 3.865 14 C -0.101 4.101 15 C 0.009 3.991 16 N -0.484 5.484 17 C 0.023 3.977 18 C 0.441 3.559 19 O -0.618 6.618 20 N -0.577 5.577 21 C -0.334 4.334 22 H 0.078 0.922 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.271 1.271 29 C 0.013 3.987 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.414 0.586 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.120 0.880 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.107 0.893 46 H 0.077 0.923 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.105 0.895 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.533 -9.173 23.716 28.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.124 4.124 3 H 0.076 0.924 4 C -0.010 4.010 5 O -0.325 6.325 6 C -0.018 4.018 7 C -0.184 4.184 8 C -0.121 4.121 9 H 0.142 0.858 10 C 0.303 3.697 11 O -0.455 6.455 12 N -0.369 5.369 13 C 0.011 3.989 14 C -0.120 4.120 15 C -0.120 4.120 16 N -0.206 5.206 17 C -0.109 4.109 18 C 0.229 3.771 19 O -0.504 6.504 20 N -0.215 5.215 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.197 1.197 29 C -0.116 4.116 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.076 0.924 39 H 0.251 0.749 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.138 0.862 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.125 0.875 46 H 0.095 0.905 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.123 0.877 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.339 -9.469 23.432 28.577 hybrid contribution 0.710 1.096 -0.746 1.504 sum -12.629 -8.373 22.687 27.281 Atomic orbital electron populations 1.21839 0.93636 1.02421 1.02715 1.21529 0.97206 0.99502 0.94139 0.92448 1.22774 0.80198 1.00612 0.97415 1.87933 1.21319 1.76961 1.46303 1.22739 1.00030 0.95086 0.83900 1.22220 0.92918 1.02493 1.00734 1.21476 0.97617 1.01303 0.91751 0.85803 1.20977 0.78668 0.84729 0.85355 1.90662 1.40614 1.26992 1.87202 1.45965 1.55856 1.29957 1.05128 1.21287 1.00016 0.94916 0.82676 1.23063 0.94117 1.02026 0.92783 1.24081 0.98016 1.01111 0.88787 1.68342 1.04971 1.35677 1.11642 1.22357 0.94971 0.94014 0.99550 1.20820 0.88159 0.85100 0.83037 1.90473 1.68969 1.24422 1.66541 1.41969 1.21322 1.14249 1.43913 1.19618 0.99575 0.99881 1.27273 0.90391 1.26062 1.02870 0.94692 0.97817 1.69673 1.41328 1.04702 1.40517 0.84980 0.77246 0.77890 0.78172 1.19682 1.19458 1.19661 1.24069 0.91942 1.01655 0.93924 0.91479 0.92014 0.92521 0.91065 0.88092 0.90784 0.87713 0.88125 0.92449 0.74902 0.90643 0.92610 0.86206 0.91365 0.90644 0.87538 0.90535 0.77100 0.91312 0.87702 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.92 71.98 0.64 -1.50 16 2 C -0.10 -1.56 2.05 -10.71 -0.02 -1.58 16 3 H 0.06 1.19 8.03 -2.39 -0.02 1.17 16 4 C 0.07 0.80 6.13 72.01 0.44 1.24 16 5 O -0.41 -6.46 10.77 -148.98 -1.60 -8.06 16 6 C 0.06 0.62 6.84 72.02 0.49 1.11 16 7 C -0.15 -1.65 5.29 30.69 0.16 -1.49 16 8 C -0.10 -1.27 2.11 -11.42 -0.02 -1.29 16 9 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 10 C 0.52 9.42 6.88 87.66 0.60 10.02 16 11 O -0.58 -15.28 13.86 -3.04 -0.04 -15.32 16 12 N -0.72 -10.36 5.46 -463.07 -2.53 -12.89 16 13 C 0.14 2.25 5.53 86.38 0.48 2.73 16 14 C -0.10 -1.76 3.94 -10.15 -0.04 -1.80 16 15 C 0.01 0.23 7.51 86.41 0.65 0.88 16 16 N -0.48 -14.85 5.65 -912.33 -5.15 -20.01 16 17 C 0.02 0.79 5.28 85.56 0.45 1.24 16 18 C 0.44 21.44 7.83 87.66 0.69 22.12 16 19 O -0.62 -35.01 16.01 -3.05 -0.05 -35.06 16 20 N -0.58 -30.14 5.29 -306.99 -1.62 -31.76 16 21 C -0.33 -19.23 9.68 84.04 0.81 -18.42 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.80 5.50 84.92 0.47 -0.34 16 24 N -0.92 -50.24 13.05 21.66 0.28 -49.96 16 25 Si 0.99 43.28 29.55 68.60 2.03 45.31 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 28 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 29 C 0.01 0.26 7.51 86.41 0.65 0.91 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 1.14 5.79 -2.38 -0.01 1.13 16 33 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.10 0.73 7.67 -2.39 -0.02 0.72 16 38 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.41 3.90 7.96 -92.71 -0.74 3.16 16 40 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.06 1.12 7.84 -2.39 -0.02 1.10 16 42 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.07 1.76 7.23 -2.38 -0.02 1.74 16 44 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.11 3.25 8.08 -2.39 -0.02 3.23 16 46 H 0.08 2.34 7.38 -2.39 -0.02 2.32 16 47 H 0.40 19.60 7.90 -92.71 -0.73 18.87 16 48 H 0.28 14.19 8.31 -92.70 -0.77 13.42 16 49 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 50 H 0.09 1.50 7.88 -2.39 -0.02 1.49 16 Total: -1.00 -77.04 400.89 -2.76 -79.80 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: -0.52 Total: 34.11 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 6.45 Total: 13.83 kcal Atomic # 7 Polarization: -105.59 SS G_CDS: -9.02 Total: -114.62 kcal Atomic # 8 Polarization: -56.74 SS G_CDS: -1.69 Total: -58.44 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -77.04 -2.76 -79.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268874735.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.953 kcal (2) G-P(sol) polarization free energy of solvation -77.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds