Wall clock time and date at job start Tue Mar 31 2020 22:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.57011 * 2 1 4 4 C 1.53098 * 109.59642 * 239.87890 * 2 1 3 5 5 O 1.42904 * 109.48506 * 182.57710 * 4 2 1 6 6 C 1.42894 * 114.09863 * 61.11309 * 5 4 2 7 7 C 1.53097 * 109.41601 * 298.84299 * 6 5 4 8 8 C 1.53171 * 109.52072 * 120.15581 * 2 1 3 9 9 H 1.09004 * 109.54688 * 56.92858 * 8 2 1 10 10 C 1.50706 * 109.54501 * 296.75139 * 8 2 1 11 11 O 1.21277 * 119.99761 * 0.18090 * 10 8 2 12 12 N 1.34778 * 119.99766 * 180.17659 * 10 8 2 13 13 C 1.46500 * 119.99330 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.46720 * 180.02562 * 13 12 10 15 15 C 1.53517 * 114.17059 * 185.00106 * 14 13 12 16 16 N 1.47479 * 87.99753 * 220.35597 * 15 14 13 17 17 C 1.46897 * 110.99965 * 138.66774 * 16 15 14 18 18 C 1.50703 * 109.46984 * 169.99962 * 17 16 15 19 19 O 1.21293 * 120.00121 * 0.02562 * 18 17 16 20 20 N 1.34781 * 119.99878 * 180.02562 * 18 17 16 21 21 C 1.37095 * 119.99909 * 180.02562 * 20 18 17 22 22 H 1.08005 * 119.99877 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00188 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99614 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00135 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47416 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47146 * 119.99691 * 25 23 21 28 28 H 1.48497 * 109.47144 * 239.99306 * 25 23 21 29 29 C 1.47487 * 87.83637 * 26.97912 * 16 15 14 30 30 H 1.08999 * 109.47053 * 299.84663 * 1 2 3 31 31 H 1.08999 * 109.46531 * 59.84628 * 1 2 3 32 32 H 1.08998 * 109.46815 * 179.83935 * 1 2 3 33 33 H 1.09005 * 109.48649 * 62.54816 * 4 2 1 34 34 H 1.09000 * 109.42413 * 302.56324 * 4 2 1 35 35 H 1.09000 * 109.48539 * 178.86087 * 6 5 4 36 36 H 1.09004 * 109.48308 * 58.82272 * 6 5 4 37 37 H 1.08996 * 109.51794 * 297.70048 * 7 6 5 38 38 H 1.08996 * 109.52092 * 177.51356 * 7 6 5 39 39 H 0.96992 * 120.00177 * 0.02562 * 12 10 8 40 40 H 1.08994 * 109.47597 * 60.00315 * 13 12 10 41 41 H 1.08998 * 109.47413 * 299.99984 * 13 12 10 42 42 H 1.09000 * 113.38231 * 318.07482 * 14 13 12 43 43 H 1.09002 * 113.47888 * 105.55955 * 15 14 13 44 44 H 1.09003 * 113.47419 * 335.15289 * 15 14 13 45 45 H 1.08993 * 109.47675 * 290.00415 * 17 16 15 46 46 H 1.09000 * 109.47111 * 50.00574 * 17 16 15 47 47 H 0.96999 * 119.99814 * 359.97438 * 20 18 17 48 48 H 0.96999 * 119.99857 * 180.02562 * 24 23 21 49 49 H 1.09004 * 113.47787 * 87.75324 * 29 16 15 50 50 H 1.09001 * 113.47615 * 218.16496 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0436 -0.7238 -1.2475 5 8 3.4713 -0.7750 -1.2151 6 6 4.0044 -1.4834 -0.0945 7 6 3.5716 -0.7890 1.1994 8 6 2.0419 -0.7252 1.2483 9 1 1.6354 -1.7363 1.2750 10 6 1.6078 0.0253 2.4810 11 8 0.9506 1.0389 2.3737 12 7 1.9500 -0.4300 3.7025 13 6 1.5276 0.2994 4.9007 14 6 2.0440 -0.4236 6.1463 15 6 1.5604 0.1831 7.4711 16 7 2.9141 -0.0452 8.0100 17 6 3.3577 1.0970 8.8202 18 6 4.6252 0.7333 9.5497 19 8 5.1115 -0.3688 9.4083 20 7 5.2185 1.6328 10.3594 21 6 6.3719 1.3021 11.0227 22 1 6.8048 0.3207 10.8967 23 6 6.9833 2.2291 11.8578 24 7 6.4561 3.4231 12.0115 25 14 8.5543 1.7783 12.7621 26 1 8.9389 0.3850 12.4218 27 1 9.6417 2.7053 12.3575 28 1 8.3312 1.8863 14.2262 29 6 3.4208 0.0581 6.6288 30 1 -0.3633 0.5114 0.8913 31 1 -0.3632 0.5162 -0.8886 32 1 -0.3633 -1.0277 -0.0029 33 1 1.7192 -0.1867 -2.1389 34 1 1.6439 -1.7377 -1.2687 35 1 5.0927 -1.4936 -0.1550 36 1 3.6304 -2.5073 -0.1002 37 1 3.9793 0.2215 1.2243 38 1 3.9403 -1.3528 2.0563 39 1 2.4759 -1.2404 3.7882 40 1 0.4391 0.3464 4.9327 41 1 1.9342 1.3103 4.8730 42 1 1.9451 -1.5076 6.0895 43 1 0.7907 -0.4100 7.9649 44 1 1.2956 1.2377 7.3946 45 1 3.5448 1.9522 8.1709 46 1 2.5829 1.3523 9.5432 47 1 4.8298 2.5143 10.4723 48 1 6.8831 4.0704 12.5942 49 1 3.6528 1.0794 6.3266 50 1 4.2284 -0.6402 6.4092 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268874736.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:58 Heat of formation + Delta-G solvation = -90.928375 kcal Electronic energy + Delta-G solvation = -29230.150586 eV Core-core repulsion = 25065.130944 eV Total energy + Delta-G solvation = -4165.019641 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.93893 -40.23104 -38.86008 -37.77173 -35.22863 -34.61286 -33.89325 -32.69643 -31.36234 -30.81541 -28.09167 -27.02390 -26.00775 -25.91285 -24.75975 -22.79753 -22.67905 -21.36615 -20.43322 -19.62248 -19.20203 -17.93803 -17.61362 -16.71364 -16.43532 -16.23594 -16.00563 -15.68580 -15.31514 -15.19171 -15.01484 -14.77629 -14.57282 -14.46948 -14.20689 -13.67516 -13.62109 -13.16873 -13.11360 -12.76162 -12.57133 -12.53326 -12.34330 -12.19827 -11.87383 -11.65681 -11.52433 -11.40364 -11.38604 -11.11287 -11.04058 -10.86457 -10.78346 -10.54031 -10.34607 -10.28897 -10.21902 -9.65742 -9.51068 -9.32413 -8.82304 -8.21408 -7.95962 -6.41545 -3.82294 2.33523 2.83392 3.16075 3.26463 3.33722 3.45746 3.89322 3.95431 4.08625 4.16374 4.23307 4.25353 4.33172 4.45356 4.59211 4.73270 4.76341 4.93967 4.97071 5.01098 5.04247 5.09826 5.17620 5.19425 5.23435 5.28966 5.30889 5.35466 5.45054 5.46604 5.48839 5.60633 5.63847 5.65570 5.69843 5.72148 5.90096 5.91973 5.96895 6.08814 6.23716 6.26408 6.50887 6.75457 7.13935 7.19804 7.55433 7.93867 8.06461 8.62377 9.18751 9.54978 10.07278 10.76433 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018845 B = 0.001788 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.470952 B =15657.938808 C =16482.507740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 H 0.087 0.913 4 C 0.065 3.935 5 O -0.382 6.382 6 C 0.062 3.938 7 C -0.149 4.149 8 C -0.106 4.106 9 H 0.098 0.902 10 C 0.519 3.481 11 O -0.535 6.535 12 N -0.726 5.726 13 C 0.131 3.869 14 C -0.132 4.132 15 C 0.005 3.995 16 N -0.440 5.440 17 C 0.008 3.992 18 C 0.447 3.553 19 O -0.576 6.576 20 N -0.567 5.567 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 C 0.010 3.990 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.402 0.598 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.108 0.892 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.088 0.912 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.068 0.932 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.402 -7.494 -23.914 27.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.125 4.125 3 H 0.105 0.895 4 C -0.012 4.012 5 O -0.300 6.300 6 C -0.015 4.015 7 C -0.187 4.187 8 C -0.127 4.127 9 H 0.116 0.884 10 C 0.305 3.695 11 O -0.411 6.411 12 N -0.378 5.378 13 C 0.007 3.993 14 C -0.151 4.151 15 C -0.125 4.125 16 N -0.161 5.161 17 C -0.124 4.124 18 C 0.232 3.768 19 O -0.459 6.459 20 N -0.205 5.205 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.181 4.181 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.119 4.119 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.117 0.883 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.236 0.764 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.126 0.874 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.107 0.893 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.086 0.914 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.196 -7.827 -23.630 27.720 hybrid contribution 0.507 0.777 0.665 1.142 sum -11.689 -7.050 -22.965 26.716 Atomic orbital electron populations 1.21910 0.93793 1.01645 1.03738 1.21580 0.97102 1.00820 0.92977 0.89466 1.22718 0.80845 0.99669 0.97969 1.87961 1.20433 1.76313 1.45325 1.22584 0.99561 0.94402 0.84913 1.22232 0.93577 1.03365 0.99572 1.21455 0.97136 1.00628 0.93499 0.88438 1.20513 0.79369 0.85197 0.84451 1.90669 1.38839 1.25004 1.86631 1.46039 1.56355 1.29682 1.05717 1.21373 0.99916 0.95540 0.82487 1.23038 0.97699 1.01243 0.93100 1.23832 0.94859 1.00284 0.93542 1.68815 1.02571 1.36632 1.08108 1.22513 0.98624 0.92748 0.98509 1.19664 0.86645 0.86336 0.84190 1.90518 1.66209 1.22338 1.66845 1.41886 1.23891 1.14444 1.40236 1.19744 1.00386 1.00817 1.21768 0.87910 1.25262 0.99764 0.95086 0.97956 1.69621 1.40669 1.05196 1.38941 0.85800 0.80931 0.78762 0.78851 1.19236 1.20777 1.20753 1.23981 0.97012 1.01050 0.89892 0.89973 0.92529 0.93237 0.88511 0.93075 0.88305 0.92868 0.90181 0.90014 0.76383 0.91050 0.91195 0.87365 0.89377 0.91173 0.92247 0.89342 0.77555 0.91953 0.91357 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.93 37.16 0.33 -0.82 16 2 C -0.11 -0.81 2.05 -90.48 -0.19 -1.00 16 3 H 0.09 0.85 8.03 -51.93 -0.42 0.43 16 4 C 0.06 0.43 6.13 37.21 0.23 0.66 16 5 O -0.38 -3.23 10.77 -35.23 -0.38 -3.61 16 6 C 0.06 0.38 6.84 37.21 0.25 0.63 16 7 C -0.15 -0.93 5.30 -26.59 -0.14 -1.07 16 8 C -0.11 -0.74 2.11 -91.59 -0.19 -0.93 16 9 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 10 C 0.52 4.91 6.88 -10.98 -0.08 4.84 16 11 O -0.53 -6.98 13.87 5.56 0.08 -6.91 16 12 N -0.73 -5.79 5.46 -60.29 -0.33 -6.12 16 13 C 0.13 1.18 5.59 -4.04 -0.02 1.16 16 14 C -0.13 -1.28 4.09 -90.02 -0.37 -1.65 16 15 C 0.00 0.05 7.26 -7.54 -0.05 0.00 16 16 N -0.44 -7.03 5.82 -245.86 -1.43 -8.46 16 17 C 0.01 0.14 5.30 -4.98 -0.03 0.12 16 18 C 0.45 10.69 7.85 -10.98 -0.09 10.61 16 19 O -0.58 -15.94 16.01 5.55 0.09 -15.86 16 20 N -0.57 -14.53 5.29 -10.96 -0.06 -14.58 16 21 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 22 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 24 N -0.90 -24.71 13.05 55.50 0.72 -23.99 16 25 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 C 0.01 0.13 7.29 -7.47 -0.05 0.07 16 30 H 0.08 0.82 5.80 -51.93 -0.30 0.52 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.38 7.68 -51.93 -0.40 -0.02 16 39 H 0.40 2.34 7.97 -40.82 -0.33 2.01 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.72 7.81 -51.93 -0.41 0.32 16 42 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 0.72 7.87 -51.93 -0.41 0.31 16 45 H 0.06 0.94 7.30 -51.93 -0.38 0.56 16 46 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 47 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 48 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 49 H 0.07 0.88 7.15 -51.93 -0.37 0.51 16 50 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 400.69 15.07 6.04 6.04 Total: -1.00 -34.67 400.69 -9.26 -43.93 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -8.33 Total: 8.86 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -0.63 Total: 4.56 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: -1.09 Total: -53.15 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.21 Total: -26.37 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.67 -9.26 -43.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268874736.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.001 kcal (2) G-P(sol) polarization free energy of solvation -34.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds