Wall clock time and date at job start Tue Mar 31 2020 22:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.57011 * 2 1 4 4 C 1.53098 * 109.59642 * 239.87890 * 2 1 3 5 5 O 1.42904 * 109.48506 * 182.57710 * 4 2 1 6 6 C 1.42894 * 114.09863 * 61.11309 * 5 4 2 7 7 C 1.53097 * 109.41601 * 298.84299 * 6 5 4 8 8 C 1.53171 * 109.52072 * 120.15581 * 2 1 3 9 9 H 1.09004 * 109.54688 * 56.92858 * 8 2 1 10 10 C 1.50706 * 109.54501 * 296.75139 * 8 2 1 11 11 O 1.21277 * 119.99761 * 0.18090 * 10 8 2 12 12 N 1.34778 * 119.99766 * 180.17659 * 10 8 2 13 13 C 1.46500 * 119.99330 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.46720 * 180.02562 * 13 12 10 15 15 C 1.53517 * 114.17059 * 185.00106 * 14 13 12 16 16 N 1.47479 * 87.99753 * 220.35597 * 15 14 13 17 17 C 1.46897 * 110.99965 * 138.66774 * 16 15 14 18 18 C 1.50703 * 109.46984 * 169.99962 * 17 16 15 19 19 O 1.21293 * 120.00121 * 0.02562 * 18 17 16 20 20 N 1.34781 * 119.99878 * 180.02562 * 18 17 16 21 21 C 1.37095 * 119.99909 * 180.02562 * 20 18 17 22 22 H 1.08005 * 119.99877 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00188 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99614 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00135 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47416 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47146 * 119.99691 * 25 23 21 28 28 H 1.48497 * 109.47144 * 239.99306 * 25 23 21 29 29 C 1.47487 * 87.83637 * 26.97912 * 16 15 14 30 30 H 1.08999 * 109.47053 * 299.84663 * 1 2 3 31 31 H 1.08999 * 109.46531 * 59.84628 * 1 2 3 32 32 H 1.08998 * 109.46815 * 179.83935 * 1 2 3 33 33 H 1.09005 * 109.48649 * 62.54816 * 4 2 1 34 34 H 1.09000 * 109.42413 * 302.56324 * 4 2 1 35 35 H 1.09000 * 109.48539 * 178.86087 * 6 5 4 36 36 H 1.09004 * 109.48308 * 58.82272 * 6 5 4 37 37 H 1.08996 * 109.51794 * 297.70048 * 7 6 5 38 38 H 1.08996 * 109.52092 * 177.51356 * 7 6 5 39 39 H 0.96992 * 120.00177 * 0.02562 * 12 10 8 40 40 H 1.08994 * 109.47597 * 60.00315 * 13 12 10 41 41 H 1.08998 * 109.47413 * 299.99984 * 13 12 10 42 42 H 1.09000 * 113.38231 * 318.07482 * 14 13 12 43 43 H 1.09002 * 113.47888 * 105.55955 * 15 14 13 44 44 H 1.09003 * 113.47419 * 335.15289 * 15 14 13 45 45 H 1.08993 * 109.47675 * 290.00415 * 17 16 15 46 46 H 1.09000 * 109.47111 * 50.00574 * 17 16 15 47 47 H 0.96999 * 119.99814 * 359.97438 * 20 18 17 48 48 H 0.96999 * 119.99857 * 180.02562 * 24 23 21 49 49 H 1.09004 * 113.47787 * 87.75324 * 29 16 15 50 50 H 1.09001 * 113.47615 * 218.16496 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0436 -0.7238 -1.2475 5 8 3.4713 -0.7750 -1.2151 6 6 4.0044 -1.4834 -0.0945 7 6 3.5716 -0.7890 1.1994 8 6 2.0419 -0.7252 1.2483 9 1 1.6354 -1.7363 1.2750 10 6 1.6078 0.0253 2.4810 11 8 0.9506 1.0389 2.3737 12 7 1.9500 -0.4300 3.7025 13 6 1.5276 0.2994 4.9007 14 6 2.0440 -0.4236 6.1463 15 6 1.5604 0.1831 7.4711 16 7 2.9141 -0.0452 8.0100 17 6 3.3577 1.0970 8.8202 18 6 4.6252 0.7333 9.5497 19 8 5.1115 -0.3688 9.4083 20 7 5.2185 1.6328 10.3594 21 6 6.3719 1.3021 11.0227 22 1 6.8048 0.3207 10.8967 23 6 6.9833 2.2291 11.8578 24 7 6.4561 3.4231 12.0115 25 14 8.5543 1.7783 12.7621 26 1 8.9389 0.3850 12.4218 27 1 9.6417 2.7053 12.3575 28 1 8.3312 1.8863 14.2262 29 6 3.4208 0.0581 6.6288 30 1 -0.3633 0.5114 0.8913 31 1 -0.3632 0.5162 -0.8886 32 1 -0.3633 -1.0277 -0.0029 33 1 1.7192 -0.1867 -2.1389 34 1 1.6439 -1.7377 -1.2687 35 1 5.0927 -1.4936 -0.1550 36 1 3.6304 -2.5073 -0.1002 37 1 3.9793 0.2215 1.2243 38 1 3.9403 -1.3528 2.0563 39 1 2.4759 -1.2404 3.7882 40 1 0.4391 0.3464 4.9327 41 1 1.9342 1.3103 4.8730 42 1 1.9451 -1.5076 6.0895 43 1 0.7907 -0.4100 7.9649 44 1 1.2956 1.2377 7.3946 45 1 3.5448 1.9522 8.1709 46 1 2.5829 1.3523 9.5432 47 1 4.8298 2.5143 10.4723 48 1 6.8831 4.0704 12.5942 49 1 3.6528 1.0794 6.3266 50 1 4.2284 -0.6402 6.4092 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268874736.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:57 Heat of formation + Delta-G solvation = -118.925293 kcal Electronic energy + Delta-G solvation = -29231.364623 eV Core-core repulsion = 25065.130944 eV Total energy + Delta-G solvation = -4166.233679 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.71040 -41.21979 -39.74601 -39.40340 -36.10554 -35.85285 -35.26179 -33.39143 -33.21537 -32.01971 -29.07866 -27.79295 -26.97515 -26.90457 -26.22027 -23.92212 -23.27415 -22.05160 -21.15958 -21.03885 -20.40193 -19.90494 -18.39218 -17.80732 -17.43411 -17.05171 -16.79981 -16.62328 -16.55087 -16.46133 -16.03019 -15.94999 -15.52838 -15.48889 -15.07859 -15.06413 -14.86390 -14.36837 -14.01907 -13.73977 -13.63309 -13.53183 -13.33809 -13.06206 -12.98830 -12.82490 -12.69778 -12.44538 -12.42578 -12.36366 -12.13066 -11.97596 -11.90028 -11.60785 -11.52856 -11.47715 -11.40964 -10.92236 -10.40046 -10.30228 -10.07369 -10.02673 -9.73306 -8.48266 -5.97158 1.35291 1.40295 1.54722 1.61356 2.03967 2.14622 2.27700 2.82265 2.98321 3.17634 3.28088 3.43971 3.53172 3.68285 3.73073 3.73962 3.92697 4.13192 4.15649 4.24208 4.24963 4.26838 4.36766 4.45849 4.47316 4.50290 4.51801 4.60635 4.63894 4.66359 4.71541 4.74664 4.80286 4.82461 4.86052 4.95428 5.09052 5.13137 5.20397 5.32861 5.35553 5.38017 5.40141 5.53774 5.89526 6.08166 6.27368 6.54366 6.59090 7.11597 7.25131 7.54935 8.11225 8.69455 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018845 B = 0.001788 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.470952 B =15657.938808 C =16482.507740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 H 0.057 0.943 4 C 0.066 3.934 5 O -0.406 6.406 6 C 0.059 3.941 7 C -0.145 4.145 8 C -0.101 4.101 9 H 0.124 0.876 10 C 0.516 3.484 11 O -0.575 6.575 12 N -0.717 5.717 13 C 0.138 3.862 14 C -0.101 4.101 15 C 0.008 3.992 16 N -0.476 5.476 17 C 0.022 3.978 18 C 0.442 3.558 19 O -0.619 6.619 20 N -0.577 5.577 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.270 1.270 29 C 0.003 3.997 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.414 0.586 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.122 0.878 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.107 0.893 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.070 0.930 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.046 -8.510 -24.513 29.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.124 4.124 3 H 0.076 0.924 4 C -0.010 4.010 5 O -0.325 6.325 6 C -0.018 4.018 7 C -0.183 4.183 8 C -0.122 4.122 9 H 0.142 0.858 10 C 0.303 3.697 11 O -0.455 6.455 12 N -0.369 5.369 13 C 0.014 3.986 14 C -0.120 4.120 15 C -0.121 4.121 16 N -0.198 5.198 17 C -0.110 4.110 18 C 0.229 3.771 19 O -0.504 6.504 20 N -0.214 5.214 21 C -0.462 4.462 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.195 1.195 28 H -0.196 1.196 29 C -0.126 4.126 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.251 0.749 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.140 0.860 43 H 0.118 0.882 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.125 0.875 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.850 -8.843 -24.229 28.816 hybrid contribution 0.685 1.089 0.830 1.531 sum -12.165 -7.754 -23.399 27.489 Atomic orbital electron populations 1.21837 0.93629 1.02415 1.02712 1.21530 0.97195 0.99525 0.94134 0.92430 1.22769 0.80204 1.00613 0.97420 1.87931 1.21332 1.76919 1.46321 1.22740 1.00053 0.95066 0.83915 1.22217 0.92902 1.02505 1.00723 1.21476 0.97632 1.01298 0.91757 0.85832 1.20968 0.78625 0.84768 0.85344 1.90661 1.40747 1.26840 1.87205 1.45961 1.55979 1.29879 1.05092 1.21220 1.00009 0.94910 0.82485 1.22832 0.94618 1.01834 0.92696 1.23925 0.92764 1.01673 0.93706 1.68774 1.05489 1.36266 1.09305 1.22383 0.95566 0.94071 0.99003 1.20805 0.87872 0.85263 0.83142 1.90478 1.67855 1.24105 1.67996 1.41972 1.23706 1.14985 1.40787 1.19691 1.02189 1.00465 1.23885 0.90424 1.26060 1.02528 0.94816 0.98033 1.69679 1.41742 1.05693 1.39118 0.84858 0.77225 0.78241 0.77936 1.19792 1.19548 1.19551 1.24044 0.98445 1.01014 0.89093 0.92520 0.92012 0.91491 0.88094 0.91103 0.87700 0.90815 0.92412 0.88106 0.74888 0.90588 0.92441 0.86036 0.88164 0.89657 0.90251 0.87450 0.77071 0.91308 0.91163 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.93 71.99 0.64 -1.47 16 2 C -0.10 -1.54 2.05 -10.70 -0.02 -1.57 16 3 H 0.06 1.18 8.03 -2.39 -0.02 1.16 16 4 C 0.07 0.79 6.13 72.01 0.44 1.23 16 5 O -0.41 -6.38 10.77 -148.98 -1.60 -7.99 16 6 C 0.06 0.60 6.84 72.01 0.49 1.10 16 7 C -0.15 -1.61 5.30 30.69 0.16 -1.45 16 8 C -0.10 -1.25 2.11 -11.42 -0.02 -1.27 16 9 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 10 C 0.52 9.29 6.88 87.66 0.60 9.89 16 11 O -0.57 -15.11 13.87 -3.02 -0.04 -15.15 16 12 N -0.72 -10.17 5.46 -463.06 -2.53 -12.70 16 13 C 0.14 2.25 5.59 86.38 0.48 2.74 16 14 C -0.10 -1.74 4.09 -10.41 -0.04 -1.78 16 15 C 0.01 0.17 7.26 83.58 0.61 0.77 16 16 N -0.48 -14.68 5.82 -931.76 -5.43 -20.11 16 17 C 0.02 0.74 5.30 85.56 0.45 1.19 16 18 C 0.44 21.47 7.85 87.66 0.69 22.16 16 19 O -0.62 -35.18 16.01 -3.07 -0.05 -35.23 16 20 N -0.58 -30.11 5.29 -306.97 -1.62 -31.73 16 21 C -0.33 -19.18 9.68 84.04 0.81 -18.37 16 22 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 23 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 24 N -0.92 -50.16 13.05 21.66 0.28 -49.88 16 25 Si 0.99 43.30 29.55 68.60 2.03 45.33 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 28 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 29 C 0.00 0.08 7.29 83.62 0.61 0.69 16 30 H 0.06 1.13 5.80 -2.39 -0.01 1.12 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.10 0.71 7.68 -2.39 -0.02 0.69 16 39 H 0.41 3.79 7.97 -92.71 -0.74 3.05 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.06 1.12 7.81 -2.39 -0.02 1.11 16 42 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.09 1.50 7.87 -2.39 -0.02 1.48 16 45 H 0.08 2.40 7.30 -2.39 -0.02 2.38 16 46 H 0.11 3.26 8.08 -2.39 -0.02 3.24 16 47 H 0.40 19.56 7.90 -92.71 -0.73 18.83 16 48 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 49 H 0.07 1.75 7.15 -2.39 -0.02 1.74 16 50 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -77.31 400.69 -3.11 -80.42 By element: Atomic # 1 Polarization: 34.03 SS G_CDS: -0.52 Total: 33.52 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 6.37 Total: 13.53 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -9.29 Total: -114.41 kcal Atomic # 8 Polarization: -56.68 SS G_CDS: -1.70 Total: -58.37 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -77.31 -3.11 -80.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268874736.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.508 kcal (2) G-P(sol) polarization free energy of solvation -77.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds