Wall clock time and date at job start Tue Mar 31 2020 22:30:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 H 1.08996 * 109.57011 * 2 1
4 4 C 1.53098 * 109.59642 * 239.87890 * 2 1 3
5 5 O 1.42904 * 109.48506 * 182.57710 * 4 2 1
6 6 C 1.42894 * 114.09863 * 61.11309 * 5 4 2
7 7 C 1.53097 * 109.41601 * 298.84299 * 6 5 4
8 8 C 1.53171 * 109.52072 * 120.15581 * 2 1 3
9 9 H 1.09004 * 109.54688 * 56.92858 * 8 2 1
10 10 C 1.50706 * 109.54501 * 296.75139 * 8 2 1
11 11 O 1.21277 * 119.99761 * 0.18090 * 10 8 2
12 12 N 1.34778 * 119.99766 * 180.17659 * 10 8 2
13 13 C 1.46500 * 119.99330 * 180.02562 * 12 10 8
14 14 C 1.53001 * 109.46720 * 180.02562 * 13 12 10
15 15 C 1.53517 * 114.17059 * 185.00106 * 14 13 12
16 16 N 1.47479 * 87.99753 * 220.35597 * 15 14 13
17 17 C 1.46897 * 110.99965 * 138.66774 * 16 15 14
18 18 C 1.50703 * 109.46984 * 169.99962 * 17 16 15
19 19 O 1.21293 * 120.00121 * 0.02562 * 18 17 16
20 20 N 1.34781 * 119.99878 * 180.02562 * 18 17 16
21 21 C 1.37095 * 119.99909 * 180.02562 * 20 18 17
22 22 H 1.08005 * 119.99877 * 359.97438 * 21 20 18
23 23 C 1.38949 * 120.00188 * 180.02562 * 21 20 18
24 24 N 1.31413 * 119.99614 * 359.97438 * 23 21 20
25 25 Si 1.86794 * 120.00135 * 179.97438 * 23 21 20
26 26 H 1.48496 * 109.47416 * 359.97438 * 25 23 21
27 27 H 1.48504 * 109.47146 * 119.99691 * 25 23 21
28 28 H 1.48497 * 109.47144 * 239.99306 * 25 23 21
29 29 C 1.47487 * 87.83637 * 26.97912 * 16 15 14
30 30 H 1.08999 * 109.47053 * 299.84663 * 1 2 3
31 31 H 1.08999 * 109.46531 * 59.84628 * 1 2 3
32 32 H 1.08998 * 109.46815 * 179.83935 * 1 2 3
33 33 H 1.09005 * 109.48649 * 62.54816 * 4 2 1
34 34 H 1.09000 * 109.42413 * 302.56324 * 4 2 1
35 35 H 1.09000 * 109.48539 * 178.86087 * 6 5 4
36 36 H 1.09004 * 109.48308 * 58.82272 * 6 5 4
37 37 H 1.08996 * 109.51794 * 297.70048 * 7 6 5
38 38 H 1.08996 * 109.52092 * 177.51356 * 7 6 5
39 39 H 0.96992 * 120.00177 * 0.02562 * 12 10 8
40 40 H 1.08994 * 109.47597 * 60.00315 * 13 12 10
41 41 H 1.08998 * 109.47413 * 299.99984 * 13 12 10
42 42 H 1.09000 * 113.38231 * 318.07482 * 14 13 12
43 43 H 1.09002 * 113.47888 * 105.55955 * 15 14 13
44 44 H 1.09003 * 113.47419 * 335.15289 * 15 14 13
45 45 H 1.08993 * 109.47675 * 290.00415 * 17 16 15
46 46 H 1.09000 * 109.47111 * 50.00574 * 17 16 15
47 47 H 0.96999 * 119.99814 * 359.97438 * 20 18 17
48 48 H 0.96999 * 119.99857 * 180.02562 * 24 23 21
49 49 H 1.09004 * 113.47787 * 87.75324 * 29 16 15
50 50 H 1.09001 * 113.47615 * 218.16496 * 29 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8952 1.0270 0.0000
4 6 2.0436 -0.7238 -1.2475
5 8 3.4713 -0.7750 -1.2151
6 6 4.0044 -1.4834 -0.0945
7 6 3.5716 -0.7890 1.1994
8 6 2.0419 -0.7252 1.2483
9 1 1.6354 -1.7363 1.2750
10 6 1.6078 0.0253 2.4810
11 8 0.9506 1.0389 2.3737
12 7 1.9500 -0.4300 3.7025
13 6 1.5276 0.2994 4.9007
14 6 2.0440 -0.4236 6.1463
15 6 1.5604 0.1831 7.4711
16 7 2.9141 -0.0452 8.0100
17 6 3.3577 1.0970 8.8202
18 6 4.6252 0.7333 9.5497
19 8 5.1115 -0.3688 9.4083
20 7 5.2185 1.6328 10.3594
21 6 6.3719 1.3021 11.0227
22 1 6.8048 0.3207 10.8967
23 6 6.9833 2.2291 11.8578
24 7 6.4561 3.4231 12.0115
25 14 8.5543 1.7783 12.7621
26 1 8.9389 0.3850 12.4218
27 1 9.6417 2.7053 12.3575
28 1 8.3312 1.8863 14.2262
29 6 3.4208 0.0581 6.6288
30 1 -0.3633 0.5114 0.8913
31 1 -0.3632 0.5162 -0.8886
32 1 -0.3633 -1.0277 -0.0029
33 1 1.7192 -0.1867 -2.1389
34 1 1.6439 -1.7377 -1.2687
35 1 5.0927 -1.4936 -0.1550
36 1 3.6304 -2.5073 -0.1002
37 1 3.9793 0.2215 1.2243
38 1 3.9403 -1.3528 2.0563
39 1 2.4759 -1.2404 3.7882
40 1 0.4391 0.3464 4.9327
41 1 1.9342 1.3103 4.8730
42 1 1.9451 -1.5076 6.0895
43 1 0.7907 -0.4100 7.9649
44 1 1.2956 1.2377 7.3946
45 1 3.5448 1.9522 8.1709
46 1 2.5829 1.3523 9.5432
47 1 4.8298 2.5143 10.4723
48 1 6.8831 4.0704 12.5942
49 1 3.6528 1.0794 6.3266
50 1 4.2284 -0.6402 6.4092
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001268874736.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:30:57
Heat of formation + Delta-G solvation = -118.925293 kcal
Electronic energy + Delta-G solvation = -29231.364623 eV
Core-core repulsion = 25065.130944 eV
Total energy + Delta-G solvation = -4166.233679 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.71040 -41.21979 -39.74601 -39.40340 -36.10554 -35.85285 -35.26179 -33.39143
-33.21537 -32.01971 -29.07866 -27.79295 -26.97515 -26.90457 -26.22027 -23.92212
-23.27415 -22.05160 -21.15958 -21.03885 -20.40193 -19.90494 -18.39218 -17.80732
-17.43411 -17.05171 -16.79981 -16.62328 -16.55087 -16.46133 -16.03019 -15.94999
-15.52838 -15.48889 -15.07859 -15.06413 -14.86390 -14.36837 -14.01907 -13.73977
-13.63309 -13.53183 -13.33809 -13.06206 -12.98830 -12.82490 -12.69778 -12.44538
-12.42578 -12.36366 -12.13066 -11.97596 -11.90028 -11.60785 -11.52856 -11.47715
-11.40964 -10.92236 -10.40046 -10.30228 -10.07369 -10.02673 -9.73306 -8.48266
-5.97158 1.35291 1.40295 1.54722 1.61356 2.03967 2.14622 2.27700
2.82265 2.98321 3.17634 3.28088 3.43971 3.53172 3.68285 3.73073
3.73962 3.92697 4.13192 4.15649 4.24208 4.24963 4.26838 4.36766
4.45849 4.47316 4.50290 4.51801 4.60635 4.63894 4.66359 4.71541
4.74664 4.80286 4.82461 4.86052 4.95428 5.09052 5.13137 5.20397
5.32861 5.35553 5.38017 5.40141 5.53774 5.89526 6.08166 6.27368
6.54366 6.59090 7.11597 7.25131 7.54935 8.11225 8.69455
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.018845 B = 0.001788 C = 0.001698
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1485.470952 B =15657.938808 C =16482.507740
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.105 4.105
3 H 0.057 0.943
4 C 0.066 3.934
5 O -0.406 6.406
6 C 0.059 3.941
7 C -0.145 4.145
8 C -0.101 4.101
9 H 0.124 0.876
10 C 0.516 3.484
11 O -0.575 6.575
12 N -0.717 5.717
13 C 0.138 3.862
14 C -0.101 4.101
15 C 0.008 3.992
16 N -0.476 5.476
17 C 0.022 3.978
18 C 0.442 3.558
19 O -0.619 6.619
20 N -0.577 5.577
21 C -0.333 4.333
22 H 0.078 0.922
23 C -0.015 4.015
24 N -0.921 5.921
25 Si 0.994 3.006
26 H -0.273 1.273
27 H -0.270 1.270
28 H -0.270 1.270
29 C 0.003 3.997
30 H 0.056 0.944
31 H 0.061 0.939
32 H 0.066 0.934
33 H 0.101 0.899
34 H 0.071 0.929
35 H 0.105 0.895
36 H 0.074 0.926
37 H 0.057 0.943
38 H 0.101 0.899
39 H 0.414 0.586
40 H 0.076 0.924
41 H 0.057 0.943
42 H 0.122 0.878
43 H 0.100 0.900
44 H 0.085 0.915
45 H 0.080 0.920
46 H 0.107 0.893
47 H 0.396 0.604
48 H 0.277 0.723
49 H 0.070 0.930
50 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.046 -8.510 -24.513 29.043
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.124 4.124
3 H 0.076 0.924
4 C -0.010 4.010
5 O -0.325 6.325
6 C -0.018 4.018
7 C -0.183 4.183
8 C -0.122 4.122
9 H 0.142 0.858
10 C 0.303 3.697
11 O -0.455 6.455
12 N -0.369 5.369
13 C 0.014 3.986
14 C -0.120 4.120
15 C -0.121 4.121
16 N -0.198 5.198
17 C -0.110 4.110
18 C 0.229 3.771
19 O -0.504 6.504
20 N -0.214 5.214
21 C -0.462 4.462
22 H 0.096 0.904
23 C -0.214 4.214
24 N -0.562 5.562
25 Si 0.817 3.183
26 H -0.198 1.198
27 H -0.195 1.195
28 H -0.196 1.196
29 C -0.126 4.126
30 H 0.075 0.925
31 H 0.080 0.920
32 H 0.085 0.915
33 H 0.119 0.881
34 H 0.089 0.911
35 H 0.123 0.877
36 H 0.092 0.908
37 H 0.076 0.924
38 H 0.119 0.881
39 H 0.251 0.749
40 H 0.094 0.906
41 H 0.076 0.924
42 H 0.140 0.860
43 H 0.118 0.882
44 H 0.103 0.897
45 H 0.097 0.903
46 H 0.125 0.875
47 H 0.229 0.771
48 H 0.087 0.913
49 H 0.088 0.912
50 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -12.850 -8.843 -24.229 28.816
hybrid contribution 0.685 1.089 0.830 1.531
sum -12.165 -7.754 -23.399 27.489
Atomic orbital electron populations
1.21837 0.93629 1.02415 1.02712 1.21530 0.97195 0.99525 0.94134
0.92430 1.22769 0.80204 1.00613 0.97420 1.87931 1.21332 1.76919
1.46321 1.22740 1.00053 0.95066 0.83915 1.22217 0.92902 1.02505
1.00723 1.21476 0.97632 1.01298 0.91757 0.85832 1.20968 0.78625
0.84768 0.85344 1.90661 1.40747 1.26840 1.87205 1.45961 1.55979
1.29879 1.05092 1.21220 1.00009 0.94910 0.82485 1.22832 0.94618
1.01834 0.92696 1.23925 0.92764 1.01673 0.93706 1.68774 1.05489
1.36266 1.09305 1.22383 0.95566 0.94071 0.99003 1.20805 0.87872
0.85263 0.83142 1.90478 1.67855 1.24105 1.67996 1.41972 1.23706
1.14985 1.40787 1.19691 1.02189 1.00465 1.23885 0.90424 1.26060
1.02528 0.94816 0.98033 1.69679 1.41742 1.05693 1.39118 0.84858
0.77225 0.78241 0.77936 1.19792 1.19548 1.19551 1.24044 0.98445
1.01014 0.89093 0.92520 0.92012 0.91491 0.88094 0.91103 0.87700
0.90815 0.92412 0.88106 0.74888 0.90588 0.92441 0.86036 0.88164
0.89657 0.90251 0.87450 0.77071 0.91308 0.91163 0.91064
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.12 8.93 71.99 0.64 -1.47 16
2 C -0.10 -1.54 2.05 -10.70 -0.02 -1.57 16
3 H 0.06 1.18 8.03 -2.39 -0.02 1.16 16
4 C 0.07 0.79 6.13 72.01 0.44 1.23 16
5 O -0.41 -6.38 10.77 -148.98 -1.60 -7.99 16
6 C 0.06 0.60 6.84 72.01 0.49 1.10 16
7 C -0.15 -1.61 5.30 30.69 0.16 -1.45 16
8 C -0.10 -1.25 2.11 -11.42 -0.02 -1.27 16
9 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16
10 C 0.52 9.29 6.88 87.66 0.60 9.89 16
11 O -0.57 -15.11 13.87 -3.02 -0.04 -15.15 16
12 N -0.72 -10.17 5.46 -463.06 -2.53 -12.70 16
13 C 0.14 2.25 5.59 86.38 0.48 2.74 16
14 C -0.10 -1.74 4.09 -10.41 -0.04 -1.78 16
15 C 0.01 0.17 7.26 83.58 0.61 0.77 16
16 N -0.48 -14.68 5.82 -931.76 -5.43 -20.11 16
17 C 0.02 0.74 5.30 85.56 0.45 1.19 16
18 C 0.44 21.47 7.85 87.66 0.69 22.16 16
19 O -0.62 -35.18 16.01 -3.07 -0.05 -35.23 16
20 N -0.58 -30.11 5.29 -306.97 -1.62 -31.73 16
21 C -0.33 -19.18 9.68 84.04 0.81 -18.37 16
22 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16
23 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16
24 N -0.92 -50.16 13.05 21.66 0.28 -49.88 16
25 Si 0.99 43.30 29.55 68.60 2.03 45.33 16
26 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16
27 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16
28 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16
29 C 0.00 0.08 7.29 83.62 0.61 0.69 16
30 H 0.06 1.13 5.80 -2.39 -0.01 1.12 16
31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16
32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16
33 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16
34 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16
35 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16
36 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16
37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16
38 H 0.10 0.71 7.68 -2.39 -0.02 0.69 16
39 H 0.41 3.79 7.97 -92.71 -0.74 3.05 16
40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16
41 H 0.06 1.12 7.81 -2.39 -0.02 1.11 16
42 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16
43 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16
44 H 0.09 1.50 7.87 -2.39 -0.02 1.48 16
45 H 0.08 2.40 7.30 -2.39 -0.02 2.38 16
46 H 0.11 3.26 8.08 -2.39 -0.02 3.24 16
47 H 0.40 19.56 7.90 -92.71 -0.73 18.83 16
48 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16
49 H 0.07 1.75 7.15 -2.39 -0.02 1.74 16
50 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16
Total: -1.00 -77.31 400.69 -3.11 -80.42
By element:
Atomic # 1 Polarization: 34.03 SS G_CDS: -0.52 Total: 33.52 kcal
Atomic # 6 Polarization: 7.15 SS G_CDS: 6.37 Total: 13.53 kcal
Atomic # 7 Polarization: -105.12 SS G_CDS: -9.29 Total: -114.41 kcal
Atomic # 8 Polarization: -56.68 SS G_CDS: -1.70 Total: -58.37 kcal
Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal
Total: -77.31 -3.11 -80.42 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001268874736.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.508 kcal
(2) G-P(sol) polarization free energy of solvation -77.311 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.819 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.106 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.417 kcal
(6) G-S(sol) free energy of system = (1) + (5) -118.925 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds