Wall clock time and date at job start Tue Mar 31 2020 22:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.52300 * 2 1 4 4 C 1.53095 * 109.52039 * 120.18417 * 2 1 3 5 5 O 1.42906 * 109.41006 * 177.51495 * 4 2 1 6 6 C 1.42903 * 114.10197 * 298.84403 * 5 4 2 7 7 C 1.53089 * 109.41666 * 61.15751 * 6 5 4 8 8 C 1.53174 * 109.52330 * 239.87324 * 2 1 3 9 9 H 1.08998 * 109.54953 * 63.16061 * 8 2 1 10 10 C 1.50699 * 109.54375 * 302.98096 * 8 2 1 11 11 O 1.21278 * 119.99993 * 359.97438 * 10 8 2 12 12 N 1.34779 * 120.00248 * 180.02562 * 10 8 2 13 13 C 1.46495 * 120.00227 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.47163 * 179.97438 * 13 12 10 15 15 C 1.53512 * 114.16884 * 174.99887 * 14 13 12 16 16 N 1.47486 * 87.92942 * 139.67410 * 15 14 13 17 17 C 1.46908 * 110.99674 * 221.29602 * 16 15 14 18 18 C 1.50700 * 109.46687 * 169.99818 * 17 16 15 19 19 O 1.21300 * 120.00291 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00142 * 179.97438 * 18 17 16 21 21 C 1.37097 * 120.00443 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99452 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00219 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00083 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00134 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46862 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.47086 * 120.00081 * 25 23 21 28 28 H 1.48491 * 109.47417 * 240.00091 * 25 23 21 29 29 C 1.47480 * 87.83684 * 332.98797 * 16 15 14 30 30 H 1.09002 * 109.47340 * 180.12628 * 1 2 3 31 31 H 1.09000 * 109.47461 * 300.12791 * 1 2 3 32 32 H 1.09002 * 109.46889 * 60.13148 * 1 2 3 33 33 H 1.08995 * 109.48043 * 297.49661 * 4 2 1 34 34 H 1.08998 * 109.47885 * 57.53572 * 4 2 1 35 35 H 1.09004 * 109.48244 * 181.14937 * 6 5 4 36 36 H 1.09006 * 109.47628 * 301.18043 * 6 5 4 37 37 H 1.08995 * 109.52347 * 182.48969 * 7 6 5 38 38 H 1.09002 * 109.51855 * 62.29861 * 7 6 5 39 39 H 0.97002 * 119.99605 * 0.02562 * 12 10 8 40 40 H 1.08999 * 109.46765 * 59.99690 * 13 12 10 41 41 H 1.08999 * 109.47286 * 300.00052 * 13 12 10 42 42 H 1.09001 * 113.38400 * 41.92540 * 14 13 12 43 43 H 1.09000 * 113.47995 * 24.90844 * 15 14 13 44 44 H 1.08995 * 113.53637 * 254.44616 * 15 14 13 45 45 H 1.08993 * 109.47262 * 290.00218 * 17 16 15 46 46 H 1.08997 * 109.46666 * 50.00549 * 17 16 15 47 47 H 0.97000 * 119.99601 * 0.02562 * 20 18 17 48 48 H 0.96995 * 120.00093 * 180.02562 * 24 23 21 49 49 H 1.09004 * 113.47564 * 141.77140 * 29 16 15 50 50 H 1.08993 * 113.47671 * 272.24568 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0415 -0.7255 1.2473 5 8 3.4694 -0.7748 1.2159 6 6 4.0044 -1.4815 0.0950 7 6 3.5716 -0.7865 -1.1986 8 6 2.0419 -0.7246 -1.2487 9 1 1.7267 -0.1822 -2.1400 10 6 1.4817 -2.1231 -1.2851 11 8 0.7456 -2.5048 -0.4001 12 7 1.7995 -2.9501 -2.3008 13 6 1.2554 -4.3099 -2.3360 14 6 1.7676 -5.0320 -3.5838 15 6 1.3598 -6.5097 -3.6666 16 7 1.1262 -6.3089 -5.1090 17 6 -0.0963 -6.9972 -5.5450 18 6 -0.4365 -6.5742 -6.9508 19 8 0.2701 -5.7782 -7.5325 20 7 -1.5254 -7.0812 -7.5622 21 6 -1.8347 -6.6969 -8.8414 22 1 -1.2059 -5.9875 -9.3589 23 6 -2.9575 -7.2192 -9.4715 24 7 -3.7233 -8.0813 -8.8411 25 14 -3.3793 -6.6950 -11.2140 26 1 -2.3668 -5.7219 -11.6970 27 1 -3.3839 -7.8855 -12.1017 28 1 -4.7221 -6.0612 -11.2290 29 6 0.8561 -4.8901 -4.8108 30 1 -0.3634 -1.0277 0.0023 31 1 -0.3634 0.5158 0.8888 32 1 -0.3633 0.5118 -0.8912 33 1 1.7158 -0.1895 2.1388 34 1 1.6431 -1.7399 1.2668 35 1 5.0926 -1.4904 0.1565 36 1 3.6315 -2.5058 0.0995 37 1 3.9417 -1.3490 -2.0557 38 1 3.9780 0.2247 -1.2222 39 1 2.3891 -2.6452 -3.0081 40 1 0.1667 -4.2649 -2.3638 41 1 1.5740 -4.8519 -1.4456 42 1 2.8225 -4.8481 -3.7877 43 1 0.4531 -6.7419 -3.1081 44 1 2.1759 -7.1992 -3.4509 45 1 0.0644 -8.0749 -5.5186 46 1 -0.9178 -6.7358 -4.8781 47 1 -2.0902 -7.7181 -7.0972 48 1 -4.5070 -8.4462 -9.2811 49 1 1.2462 -4.2061 -5.5646 50 1 -0.1849 -4.6901 -4.5576 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268874737.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:01 Heat of formation + Delta-G solvation = -84.988044 kcal Electronic energy + Delta-G solvation = -29745.222084 eV Core-core repulsion = 25580.460035 eV Total energy + Delta-G solvation = -4164.762049 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.21803 -40.27325 -38.45371 -37.76105 -35.27219 -34.55505 -33.93607 -32.62184 -31.37976 -30.78375 -27.96241 -26.98216 -25.85520 -25.78643 -24.80265 -22.95300 -22.73296 -21.62647 -20.40643 -19.41683 -19.15504 -17.90953 -17.06677 -16.78760 -16.46513 -16.36227 -16.21442 -15.70227 -15.34853 -15.14839 -14.87665 -14.70212 -14.53243 -14.21752 -14.18112 -13.67788 -13.44922 -13.18381 -13.04067 -12.75592 -12.63665 -12.51360 -12.30457 -12.22673 -11.84345 -11.78625 -11.52974 -11.44943 -11.36373 -11.11499 -10.98356 -10.82833 -10.72759 -10.49069 -10.36816 -10.25166 -9.94797 -9.54432 -9.49319 -9.29136 -8.77857 -8.29448 -7.99589 -6.44634 -3.85594 2.31903 2.85300 3.13908 3.24633 3.31672 3.57826 3.85684 3.98682 4.12833 4.17558 4.24019 4.31313 4.35043 4.53331 4.62623 4.73790 4.86531 4.89810 5.04404 5.08261 5.13342 5.19386 5.27087 5.29404 5.30937 5.34262 5.36806 5.48543 5.49279 5.52148 5.55370 5.67316 5.68361 5.69656 5.76471 5.76623 5.85810 5.95927 6.05353 6.20017 6.21908 6.34202 6.53057 6.89446 7.14832 7.20165 7.52456 7.94556 8.02701 8.58025 9.14940 9.50852 10.02320 10.73178 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.001886 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.962065 B =14844.131756 C =15341.927472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.102 4.102 3 H 0.081 0.919 4 C 0.053 3.947 5 O -0.384 6.384 6 C 0.059 3.941 7 C -0.148 4.148 8 C -0.110 4.110 9 H 0.103 0.897 10 C 0.517 3.483 11 O -0.532 6.532 12 N -0.725 5.725 13 C 0.131 3.869 14 C -0.134 4.134 15 C 0.005 3.995 16 N -0.444 5.444 17 C 0.009 3.991 18 C 0.444 3.556 19 O -0.580 6.580 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.281 1.281 29 C 0.019 3.981 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.049 0.951 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.402 0.598 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.055 0.945 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.090 0.910 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.946 12.072 19.323 25.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.121 4.121 3 H 0.099 0.901 4 C -0.023 4.023 5 O -0.303 6.303 6 C -0.018 4.018 7 C -0.185 4.185 8 C -0.131 4.131 9 H 0.121 0.879 10 C 0.304 3.696 11 O -0.410 6.410 12 N -0.376 5.376 13 C 0.007 3.993 14 C -0.153 4.153 15 C -0.125 4.125 16 N -0.165 5.165 17 C -0.123 4.123 18 C 0.229 3.771 19 O -0.464 6.464 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.207 1.207 29 C -0.110 4.110 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.237 0.763 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.126 0.874 43 H 0.088 0.912 44 H 0.106 0.894 45 H 0.110 0.890 46 H 0.073 0.927 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.109 0.891 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.299 12.080 19.099 25.729 hybrid contribution -1.361 -0.077 -0.831 1.596 sum 10.938 12.003 18.268 24.443 Atomic orbital electron populations 1.22103 0.93763 1.04984 1.01314 1.21524 0.97250 0.99316 0.94007 0.90090 1.22928 0.80209 1.01948 0.97226 1.87910 1.21020 1.76246 1.45135 1.22563 0.99218 0.94682 0.85384 1.22218 0.93600 1.03324 0.99408 1.21490 0.96519 0.93773 1.01348 0.87934 1.20578 0.80586 0.87072 0.81395 1.90574 1.36603 1.76584 1.37249 1.46071 1.51013 1.14239 1.26288 1.21378 0.98773 0.81407 0.97763 1.23064 1.01272 0.96422 0.94590 1.23840 1.01507 0.95846 0.91329 1.68831 1.29868 1.04042 1.13799 1.22497 0.92217 1.00660 0.96967 1.19662 0.83684 0.86064 0.87696 1.90519 1.51661 1.37473 1.66714 1.41882 1.23216 1.40321 1.14701 1.19740 1.08924 1.24307 0.89825 0.87888 1.25273 0.96022 0.96455 1.00268 1.69618 1.16251 1.30165 1.38243 0.85797 0.78381 0.78481 0.81668 1.19223 1.20711 1.20745 1.23780 0.98193 0.93198 0.95859 0.89016 0.92771 0.93032 0.89187 0.90449 0.88606 0.93258 0.90221 0.89685 0.76327 0.91160 0.91109 0.87439 0.91192 0.89442 0.89030 0.92663 0.77492 0.91895 0.89130 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 8.86 37.16 0.33 -1.09 16 2 C -0.10 -0.83 2.67 -90.48 -0.24 -1.07 16 3 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 4 C 0.05 0.49 5.86 37.21 0.22 0.71 16 5 O -0.38 -3.83 10.77 -35.23 -0.38 -4.21 16 6 C 0.06 0.45 6.62 37.20 0.25 0.69 16 7 C -0.15 -0.88 5.57 -26.59 -0.15 -1.03 16 8 C -0.11 -0.81 2.61 -91.59 -0.24 -1.05 16 9 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 10 C 0.52 4.89 5.52 -10.99 -0.06 4.83 16 11 O -0.53 -6.61 11.36 5.56 0.06 -6.55 16 12 N -0.72 -5.92 5.44 -60.30 -0.33 -6.25 16 13 C 0.13 1.21 5.58 -4.04 -0.02 1.18 16 14 C -0.13 -1.34 4.09 -90.09 -0.37 -1.70 16 15 C 0.00 0.05 7.29 -7.54 -0.05 0.00 16 16 N -0.44 -7.05 6.06 -246.06 -1.49 -8.54 16 17 C 0.01 0.15 5.31 -4.97 -0.03 0.12 16 18 C 0.44 10.45 7.62 -10.99 -0.08 10.37 16 19 O -0.58 -15.64 15.34 5.54 0.08 -15.55 16 20 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 21 C -0.30 -8.31 9.68 -14.94 -0.14 -8.46 16 22 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16 25 Si 0.93 21.00 29.55 -169.99 -5.02 15.97 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 C 0.02 0.26 6.28 -7.54 -0.05 0.22 16 30 H 0.09 1.00 5.27 -51.93 -0.27 0.73 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.85 5.80 -51.93 -0.30 0.55 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.42 7.38 -51.93 -0.38 0.04 16 37 H 0.08 0.35 7.52 -51.93 -0.39 -0.04 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.40 2.49 7.89 -40.82 -0.32 2.17 16 40 H 0.07 0.75 7.81 -51.93 -0.41 0.35 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.07 0.72 7.73 -51.93 -0.40 0.32 16 44 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 46 H 0.06 0.87 7.56 -51.93 -0.39 0.48 16 47 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 48 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.09 1.43 8.13 -51.93 -0.42 1.01 16 50 H 0.07 0.96 7.43 -51.93 -0.39 0.58 16 LS Contribution 392.70 15.07 5.92 5.92 Total: -1.00 -33.32 392.70 -9.39 -42.71 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -8.16 Total: 10.43 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -0.74 Total: 4.20 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -1.15 Total: -52.93 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.23 Total: -26.31 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.32 -9.39 -42.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268874737.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.275 kcal (2) G-P(sol) polarization free energy of solvation -33.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds