Wall clock time and date at job start Tue Mar 31 2020 22:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.52300 * 2 1 4 4 C 1.53095 * 109.52039 * 120.18417 * 2 1 3 5 5 O 1.42906 * 109.41006 * 177.51495 * 4 2 1 6 6 C 1.42903 * 114.10197 * 298.84403 * 5 4 2 7 7 C 1.53089 * 109.41666 * 61.15751 * 6 5 4 8 8 C 1.53174 * 109.52330 * 239.87324 * 2 1 3 9 9 H 1.08998 * 109.54953 * 63.16061 * 8 2 1 10 10 C 1.50699 * 109.54375 * 302.98096 * 8 2 1 11 11 O 1.21278 * 119.99993 * 359.97438 * 10 8 2 12 12 N 1.34779 * 120.00248 * 180.02562 * 10 8 2 13 13 C 1.46495 * 120.00227 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.47163 * 179.97438 * 13 12 10 15 15 C 1.53512 * 114.16884 * 174.99887 * 14 13 12 16 16 N 1.47486 * 87.92942 * 139.67410 * 15 14 13 17 17 C 1.46908 * 110.99674 * 221.29602 * 16 15 14 18 18 C 1.50700 * 109.46687 * 169.99818 * 17 16 15 19 19 O 1.21300 * 120.00291 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00142 * 179.97438 * 18 17 16 21 21 C 1.37097 * 120.00443 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99452 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00219 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00083 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00134 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46862 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.47086 * 120.00081 * 25 23 21 28 28 H 1.48491 * 109.47417 * 240.00091 * 25 23 21 29 29 C 1.47480 * 87.83684 * 332.98797 * 16 15 14 30 30 H 1.09002 * 109.47340 * 180.12628 * 1 2 3 31 31 H 1.09000 * 109.47461 * 300.12791 * 1 2 3 32 32 H 1.09002 * 109.46889 * 60.13148 * 1 2 3 33 33 H 1.08995 * 109.48043 * 297.49661 * 4 2 1 34 34 H 1.08998 * 109.47885 * 57.53572 * 4 2 1 35 35 H 1.09004 * 109.48244 * 181.14937 * 6 5 4 36 36 H 1.09006 * 109.47628 * 301.18043 * 6 5 4 37 37 H 1.08995 * 109.52347 * 182.48969 * 7 6 5 38 38 H 1.09002 * 109.51855 * 62.29861 * 7 6 5 39 39 H 0.97002 * 119.99605 * 0.02562 * 12 10 8 40 40 H 1.08999 * 109.46765 * 59.99690 * 13 12 10 41 41 H 1.08999 * 109.47286 * 300.00052 * 13 12 10 42 42 H 1.09001 * 113.38400 * 41.92540 * 14 13 12 43 43 H 1.09000 * 113.47995 * 24.90844 * 15 14 13 44 44 H 1.08995 * 113.53637 * 254.44616 * 15 14 13 45 45 H 1.08993 * 109.47262 * 290.00218 * 17 16 15 46 46 H 1.08997 * 109.46666 * 50.00549 * 17 16 15 47 47 H 0.97000 * 119.99601 * 0.02562 * 20 18 17 48 48 H 0.96995 * 120.00093 * 180.02562 * 24 23 21 49 49 H 1.09004 * 113.47564 * 141.77140 * 29 16 15 50 50 H 1.08993 * 113.47671 * 272.24568 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0415 -0.7255 1.2473 5 8 3.4694 -0.7748 1.2159 6 6 4.0044 -1.4815 0.0950 7 6 3.5716 -0.7865 -1.1986 8 6 2.0419 -0.7246 -1.2487 9 1 1.7267 -0.1822 -2.1400 10 6 1.4817 -2.1231 -1.2851 11 8 0.7456 -2.5048 -0.4001 12 7 1.7995 -2.9501 -2.3008 13 6 1.2554 -4.3099 -2.3360 14 6 1.7676 -5.0320 -3.5838 15 6 1.3598 -6.5097 -3.6666 16 7 1.1262 -6.3089 -5.1090 17 6 -0.0963 -6.9972 -5.5450 18 6 -0.4365 -6.5742 -6.9508 19 8 0.2701 -5.7782 -7.5325 20 7 -1.5254 -7.0812 -7.5622 21 6 -1.8347 -6.6969 -8.8414 22 1 -1.2059 -5.9875 -9.3589 23 6 -2.9575 -7.2192 -9.4715 24 7 -3.7233 -8.0813 -8.8411 25 14 -3.3793 -6.6950 -11.2140 26 1 -2.3668 -5.7219 -11.6970 27 1 -3.3839 -7.8855 -12.1017 28 1 -4.7221 -6.0612 -11.2290 29 6 0.8561 -4.8901 -4.8108 30 1 -0.3634 -1.0277 0.0023 31 1 -0.3634 0.5158 0.8888 32 1 -0.3633 0.5118 -0.8912 33 1 1.7158 -0.1895 2.1388 34 1 1.6431 -1.7399 1.2668 35 1 5.0926 -1.4904 0.1565 36 1 3.6315 -2.5058 0.0995 37 1 3.9417 -1.3490 -2.0557 38 1 3.9780 0.2247 -1.2222 39 1 2.3891 -2.6452 -3.0081 40 1 0.1667 -4.2649 -2.3638 41 1 1.5740 -4.8519 -1.4456 42 1 2.8225 -4.8481 -3.7877 43 1 0.4531 -6.7419 -3.1081 44 1 2.1759 -7.1992 -3.4509 45 1 0.0644 -8.0749 -5.5186 46 1 -0.9178 -6.7358 -4.8781 47 1 -2.0902 -7.7181 -7.0972 48 1 -4.5070 -8.4462 -9.2811 49 1 1.2462 -4.2061 -5.5646 50 1 -0.1849 -4.6901 -4.5576 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268874737.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:00 Heat of formation + Delta-G solvation = -111.928032 kcal Electronic energy + Delta-G solvation = -29746.390289 eV Core-core repulsion = 25580.460035 eV Total energy + Delta-G solvation = -4165.930255 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.94606 -41.37909 -39.67827 -39.07677 -36.15232 -35.87633 -35.23662 -33.41399 -33.21397 -31.97031 -28.99639 -27.81988 -26.94384 -26.83264 -26.17772 -24.05102 -23.40588 -22.36693 -21.26486 -21.00953 -20.17893 -19.89429 -17.88395 -17.74390 -17.53274 -17.16892 -17.06937 -16.68497 -16.64344 -16.39347 -16.16448 -15.87839 -15.53402 -15.35350 -15.14237 -15.02947 -14.63802 -14.33685 -13.78425 -13.75545 -13.54638 -13.53133 -13.35959 -13.24987 -13.07456 -12.91281 -12.87665 -12.52581 -12.44810 -12.35366 -12.13594 -12.04210 -11.81214 -11.59619 -11.55808 -11.51683 -11.39781 -10.63057 -10.36531 -10.20638 -10.05153 -10.04293 -9.77819 -8.49374 -5.98329 1.34550 1.39898 1.54125 1.61195 2.01558 2.15680 2.26973 2.85267 2.95819 3.16793 3.24262 3.42686 3.54019 3.70152 3.73517 3.75793 3.95897 4.09884 4.16687 4.21210 4.28361 4.29587 4.38308 4.47460 4.49486 4.50803 4.55084 4.62657 4.68936 4.70722 4.73648 4.78218 4.83276 4.86593 4.87578 4.97405 5.10170 5.13235 5.17984 5.22110 5.34254 5.38233 5.40320 5.63193 5.88674 6.06477 6.24730 6.54208 6.56991 7.09835 7.26286 7.52692 8.08161 8.68298 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.001886 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.962065 B =14844.131756 C =15341.927472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.100 4.100 3 H 0.094 0.906 4 C 0.054 3.946 5 O -0.401 6.401 6 C 0.052 3.948 7 C -0.141 4.141 8 C -0.109 4.109 9 H 0.119 0.881 10 C 0.513 3.487 11 O -0.565 6.565 12 N -0.718 5.718 13 C 0.139 3.861 14 C -0.102 4.102 15 C 0.009 3.991 16 N -0.473 5.473 17 C 0.021 3.979 18 C 0.440 3.560 19 O -0.618 6.618 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.078 0.922 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.270 1.270 29 C 0.011 3.989 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.112 0.888 36 H 0.036 0.964 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.413 0.587 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.124 0.876 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.076 0.924 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.066 0.934 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.838 12.501 19.631 26.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.119 4.119 3 H 0.112 0.888 4 C -0.022 4.022 5 O -0.320 6.320 6 C -0.025 4.025 7 C -0.179 4.179 8 C -0.130 4.130 9 H 0.137 0.863 10 C 0.301 3.699 11 O -0.445 6.445 12 N -0.370 5.370 13 C 0.014 3.986 14 C -0.121 4.121 15 C -0.119 4.119 16 N -0.196 5.196 17 C -0.111 4.111 18 C 0.228 3.772 19 O -0.504 6.504 20 N -0.212 5.212 21 C -0.462 4.462 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.195 1.195 29 C -0.118 4.118 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.074 0.926 35 H 0.130 0.870 36 H 0.055 0.945 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.250 0.750 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.142 0.858 43 H 0.101 0.899 44 H 0.124 0.876 45 H 0.127 0.873 46 H 0.094 0.906 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.085 0.915 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.201 12.495 19.416 26.596 hybrid contribution -1.607 -0.216 -0.878 1.844 sum 11.594 12.279 18.538 25.077 Atomic orbital electron populations 1.22038 0.94384 1.03529 1.01892 1.21517 0.96679 0.99876 0.93852 0.88788 1.22872 0.80140 1.00957 0.98221 1.87882 1.21133 1.76559 1.46453 1.22743 1.00085 0.94021 0.85630 1.22219 0.92303 1.04179 0.99158 1.21544 0.97520 0.92299 1.01602 0.86271 1.20993 0.80066 0.87883 0.80945 1.90579 1.38084 1.77326 1.38511 1.46001 1.50843 1.13744 1.26374 1.21212 0.97919 0.82010 0.97431 1.22873 1.01093 0.95538 0.92641 1.23933 1.02732 0.96959 0.88324 1.68826 1.28870 1.04736 1.17136 1.22385 0.93933 1.01732 0.93014 1.20745 0.82241 0.84579 0.89675 1.90484 1.52619 1.38950 1.68385 1.41966 1.24088 1.40862 1.14326 1.19681 1.09804 1.25306 0.91370 0.90364 1.26064 0.95337 0.96105 1.03919 1.69677 1.16468 1.30368 1.39645 0.84862 0.78169 0.78266 0.76986 1.19763 1.19565 1.19549 1.23785 0.98707 0.92100 0.97202 0.91390 0.92168 0.92485 0.88724 0.92626 0.86958 0.94543 0.88176 0.88478 0.74983 0.92638 0.90499 0.85836 0.89889 0.87600 0.87275 0.90625 0.77047 0.91279 0.91528 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 8.86 71.98 0.64 -2.08 16 2 C -0.10 -1.51 2.67 -10.70 -0.03 -1.54 16 3 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 4 C 0.05 0.99 5.86 72.01 0.42 1.42 16 5 O -0.40 -7.63 10.77 -148.98 -1.60 -9.23 16 6 C 0.05 0.70 6.62 72.01 0.48 1.18 16 7 C -0.14 -1.32 5.57 30.69 0.17 -1.15 16 8 C -0.11 -1.40 2.61 -11.42 -0.03 -1.43 16 9 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 10 C 0.51 9.20 5.52 87.66 0.48 9.69 16 11 O -0.57 -14.08 11.36 -3.02 -0.03 -14.11 16 12 N -0.72 -10.56 5.44 -463.08 -2.52 -13.08 16 13 C 0.14 2.34 5.58 86.38 0.48 2.82 16 14 C -0.10 -1.83 4.09 -10.45 -0.04 -1.87 16 15 C 0.01 0.19 7.29 83.58 0.61 0.80 16 16 N -0.47 -14.50 6.06 -932.40 -5.65 -20.15 16 17 C 0.02 0.72 5.31 85.56 0.45 1.17 16 18 C 0.44 21.07 7.62 87.66 0.67 21.74 16 19 O -0.62 -34.31 15.34 -3.09 -0.05 -34.35 16 20 N -0.57 -29.73 5.29 -306.98 -1.62 -31.35 16 21 C -0.33 -18.95 9.68 84.04 0.81 -18.14 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.78 5.50 84.92 0.47 -0.32 16 24 N -0.92 -49.83 13.05 21.66 0.28 -49.54 16 25 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 28 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 29 C 0.01 0.31 6.28 83.58 0.53 0.84 16 30 H 0.07 1.52 5.27 -2.39 -0.01 1.50 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.27 5.80 -2.39 -0.01 1.25 16 35 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.04 0.58 7.38 -2.38 -0.02 0.57 16 37 H 0.10 0.54 7.52 -2.39 -0.02 0.52 16 38 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.41 4.18 7.89 -92.71 -0.73 3.44 16 40 H 0.06 1.14 7.81 -2.39 -0.02 1.12 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.08 1.48 7.73 -2.39 -0.02 1.46 16 44 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.11 3.34 8.14 -2.39 -0.02 3.33 16 46 H 0.08 2.27 7.56 -2.39 -0.02 2.26 16 47 H 0.40 19.43 7.90 -92.71 -0.73 18.70 16 48 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 49 H 0.07 2.15 8.13 -2.38 -0.02 2.13 16 50 H 0.06 1.71 7.43 -2.39 -0.02 1.69 16 Total: -1.00 -74.05 392.70 -3.56 -77.61 By element: Atomic # 1 Polarization: 36.57 SS G_CDS: -0.50 Total: 36.07 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 6.11 Total: 13.12 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -9.51 Total: -114.13 kcal Atomic # 8 Polarization: -56.01 SS G_CDS: -1.69 Total: -57.69 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -74.05 -3.56 -77.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268874737.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.315 kcal (2) G-P(sol) polarization free energy of solvation -74.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds