Wall clock time and date at job start Tue Mar 31 2020 22:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.57315 * 2 1 4 4 C 1.53098 * 109.51846 * 239.84683 * 2 1 3 5 5 O 1.42905 * 109.41305 * 182.48634 * 4 2 1 6 6 C 1.42896 * 114.09654 * 61.15551 * 5 4 2 7 7 C 1.53087 * 109.42067 * 298.84307 * 6 5 4 8 8 C 1.53173 * 109.52178 * 120.16063 * 2 1 3 9 9 H 1.08996 * 109.62197 * 296.79103 * 8 2 1 10 10 C 1.50702 * 109.54560 * 57.01982 * 8 2 1 11 11 O 1.21286 * 119.99930 * 60.11750 * 10 8 2 12 12 N 1.34768 * 119.99818 * 240.39615 * 10 8 2 13 13 C 1.46504 * 120.00194 * 179.72111 * 12 10 8 14 14 C 1.52994 * 109.47332 * 179.97438 * 13 12 10 15 15 C 1.53937 * 113.73533 * 273.76814 * 14 13 12 16 16 N 1.48189 * 86.09949 * 221.95806 * 15 14 13 17 17 C 1.46900 * 111.07298 * 137.52294 * 16 15 14 18 18 C 1.50697 * 109.47402 * 90.56402 * 17 16 15 19 19 O 1.21300 * 120.00018 * 359.97438 * 18 17 16 20 20 N 1.34772 * 120.00043 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99811 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00183 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99592 * 179.97438 * 21 20 18 24 24 N 1.31401 * 120.00483 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99582 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47273 * 60.00085 * 25 23 21 27 27 H 1.48505 * 109.47025 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47302 * 299.99878 * 25 23 21 29 29 C 1.47957 * 90.80108 * 24.59887 * 16 15 14 30 30 H 1.08998 * 109.46603 * 294.23082 * 1 2 3 31 31 H 1.09002 * 109.47432 * 54.22440 * 1 2 3 32 32 H 1.08997 * 109.47117 * 174.22966 * 1 2 3 33 33 H 1.09001 * 109.48012 * 62.50215 * 4 2 1 34 34 H 1.09001 * 109.47644 * 302.46995 * 4 2 1 35 35 H 1.09004 * 109.48031 * 178.85788 * 6 5 4 36 36 H 1.09003 * 109.48803 * 58.83582 * 6 5 4 37 37 H 1.09006 * 109.51973 * 297.70483 * 7 6 5 38 38 H 1.08994 * 109.57787 * 177.54838 * 7 6 5 39 39 H 0.97006 * 120.00344 * 359.72124 * 12 10 8 40 40 H 1.08997 * 109.46896 * 300.00254 * 13 12 10 41 41 H 1.09000 * 109.46976 * 59.99841 * 13 12 10 42 42 H 1.09003 * 112.93756 * 45.33764 * 14 13 12 43 43 H 1.08993 * 113.75897 * 336.23504 * 15 14 13 44 44 H 1.08999 * 113.75687 * 107.60892 * 15 14 13 45 45 H 1.09000 * 109.47037 * 210.56574 * 17 16 15 46 46 H 1.09002 * 109.46519 * 330.56133 * 17 16 15 47 47 H 0.96999 * 120.00274 * 0.02562 * 20 18 17 48 48 H 0.96999 * 120.00383 * 179.97438 * 24 23 21 49 49 H 1.09002 * 113.75875 * 221.08289 * 29 16 15 50 50 H 1.09001 * 113.85835 * 89.73306 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0415 -0.7248 -1.2477 5 8 3.4694 -0.7743 -1.2165 6 6 4.0042 -1.4816 -0.0960 7 6 3.5716 -0.7873 1.1980 8 6 2.0419 -0.7253 1.2482 9 1 1.7280 -0.1840 2.1407 10 6 1.4817 -2.1239 1.2839 11 8 1.7217 -2.8966 0.3803 12 7 0.7095 -2.5143 2.3171 13 6 0.1599 -3.8720 2.3488 14 6 -0.6729 -4.0555 3.6191 15 6 0.1524 -4.4897 4.8438 16 7 -0.9644 -5.4173 5.1409 17 6 -0.4614 -6.7330 5.5582 18 6 -0.2999 -6.7570 7.0563 19 8 -0.5761 -5.7746 7.7119 20 7 0.1524 -7.8697 7.6675 21 6 0.2998 -7.8914 9.0304 22 1 0.0539 -7.0166 9.6141 23 6 0.7656 -9.0388 9.6606 24 7 1.0644 -10.1033 8.9505 25 14 0.9658 -9.0686 11.5176 26 1 -0.3480 -8.8140 12.1613 27 1 1.4737 -10.3988 11.9395 28 1 1.9304 -8.0169 11.9284 29 6 -1.3613 -5.4290 3.7156 30 1 -0.3632 0.4218 0.9371 31 1 -0.3634 0.6008 -0.8338 32 1 -0.3633 -1.0224 -0.1033 33 1 1.7158 -0.1884 -2.1389 34 1 1.6430 -1.7392 -1.2678 35 1 5.0925 -1.4904 -0.1574 36 1 3.6316 -2.5060 -0.1010 37 1 3.9781 0.2238 1.2222 38 1 3.9418 -1.3493 2.0554 39 1 0.5175 -1.8964 3.0398 40 1 -0.4714 -4.0289 1.4742 41 1 0.9759 -4.5946 2.3423 42 1 -1.3399 -3.2159 3.8148 43 1 1.0851 -4.9928 4.5888 44 1 0.2814 -3.7034 5.5876 45 1 -1.1694 -7.5049 5.2566 46 1 0.5029 -6.9198 5.0857 47 1 0.3743 -8.6550 7.1432 48 1 1.3899 -10.9042 9.3904 49 1 -2.4394 -5.3919 3.5596 50 1 -0.8733 -6.2070 3.1284 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268874738.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:03 Heat of formation + Delta-G solvation = -116.305303 kcal Electronic energy + Delta-G solvation = -29621.383523 eV Core-core repulsion = 25455.263455 eV Total energy + Delta-G solvation = -4166.120067 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.89518 -41.17937 -39.65788 -38.98504 -36.01831 -35.72125 -35.45831 -33.32370 -33.14918 -32.07210 -29.01534 -27.84915 -27.09931 -26.90723 -26.02911 -23.97110 -23.28327 -22.43742 -21.23026 -21.00188 -20.19344 -19.86528 -17.90147 -17.81676 -17.46435 -17.23193 -16.86834 -16.66833 -16.58721 -16.39977 -16.14885 -15.93061 -15.49244 -15.45090 -15.09980 -14.82179 -14.65387 -14.11078 -13.96287 -13.69575 -13.60815 -13.55725 -13.44721 -13.25366 -12.98225 -12.90661 -12.68092 -12.65492 -12.45362 -12.32649 -12.13781 -11.99642 -11.85191 -11.65789 -11.61665 -11.59217 -11.50027 -10.69526 -10.38105 -10.05868 -10.03475 -10.02346 -9.63481 -8.47421 -5.96470 1.38771 1.40318 1.51482 1.61013 2.04944 2.16603 2.27911 2.77720 3.01007 3.18594 3.32308 3.45112 3.57868 3.66647 3.71267 3.74047 3.95999 4.12795 4.18027 4.22474 4.26612 4.36470 4.38061 4.47061 4.49108 4.51497 4.56102 4.62144 4.67587 4.70282 4.71840 4.80343 4.82789 4.85704 4.87243 4.94877 5.08321 5.09678 5.18375 5.25171 5.32061 5.38801 5.42738 5.52280 5.89564 6.08301 6.29105 6.55643 6.59742 7.11941 7.26244 7.55642 8.11949 8.69779 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021781 B = 0.001819 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.196396 B =15388.491613 C =15885.329059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 H 0.101 0.899 4 C 0.050 3.950 5 O -0.401 6.401 6 C 0.045 3.955 7 C -0.139 4.139 8 C -0.104 4.104 9 H 0.119 0.881 10 C 0.516 3.484 11 O -0.571 6.571 12 N -0.716 5.716 13 C 0.136 3.864 14 C -0.101 4.101 15 C 0.009 3.991 16 N -0.485 5.485 17 C 0.023 3.977 18 C 0.441 3.559 19 O -0.619 6.619 20 N -0.577 5.577 21 C -0.334 4.334 22 H 0.078 0.922 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.271 1.271 29 C 0.013 3.987 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.097 0.903 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.414 0.586 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.118 0.882 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.106 0.894 46 H 0.077 0.923 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.104 0.896 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.764 18.854 -20.309 27.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 H 0.119 0.881 4 C -0.026 4.026 5 O -0.320 6.320 6 C -0.032 4.032 7 C -0.177 4.177 8 C -0.126 4.126 9 H 0.137 0.863 10 C 0.304 3.696 11 O -0.451 6.451 12 N -0.368 5.368 13 C 0.012 3.988 14 C -0.120 4.120 15 C -0.119 4.119 16 N -0.207 5.207 17 C -0.109 4.109 18 C 0.229 3.771 19 O -0.504 6.504 20 N -0.214 5.214 21 C -0.464 4.464 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.196 1.196 29 C -0.116 4.116 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.100 0.900 39 H 0.251 0.749 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.136 0.864 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.124 0.876 46 H 0.095 0.905 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.122 0.878 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.438 18.968 -20.062 27.613 hybrid contribution 0.660 -1.141 0.856 1.572 sum 1.098 17.827 -19.206 26.227 Atomic orbital electron populations 1.21797 0.93240 1.01662 1.03683 1.21651 0.97135 1.00358 0.93408 0.88073 1.22918 0.80668 1.00764 0.98247 1.87832 1.21262 1.76400 1.46489 1.22826 0.98980 0.95865 0.85501 1.22075 0.93362 1.03498 0.98732 1.21499 0.96842 0.92415 1.01808 0.86286 1.20967 0.77603 0.89928 0.81140 1.90625 1.60140 1.56430 1.37873 1.46064 1.51115 1.15129 1.24461 1.21271 0.96616 0.83638 0.97300 1.23053 0.97244 0.99196 0.92501 1.24104 0.93598 0.97042 0.97194 1.68373 1.26050 1.06954 1.19365 1.22350 1.01486 0.95040 0.91981 1.20827 0.81997 0.83374 0.90935 1.90477 1.55901 1.36166 1.67901 1.41968 1.58400 1.13656 1.07418 1.19617 1.43186 1.00022 0.83530 0.90410 1.26056 0.96204 0.94236 1.04917 1.69661 1.44775 1.03642 1.38127 0.84985 0.78768 0.77773 0.76789 1.19713 1.19455 1.19640 1.24056 1.02850 0.96452 0.88206 0.90530 0.91032 0.94009 0.88486 0.92655 0.88460 0.92724 0.88529 0.90029 0.74949 0.90744 0.92477 0.86356 0.91268 0.90700 0.87566 0.90492 0.77091 0.91299 0.87793 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.79 71.98 0.63 -0.83 16 2 C -0.11 -1.29 2.70 -10.70 -0.03 -1.32 16 3 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 4 C 0.05 0.89 5.84 72.01 0.42 1.31 16 5 O -0.40 -8.58 10.77 -148.98 -1.60 -10.19 16 6 C 0.04 0.83 6.55 72.01 0.47 1.31 16 7 C -0.14 -1.84 5.62 30.68 0.17 -1.67 16 8 C -0.10 -1.27 2.69 -11.42 -0.03 -1.30 16 9 H 0.12 0.80 7.92 -2.39 -0.02 0.78 16 10 C 0.52 8.83 5.29 87.66 0.46 9.29 16 11 O -0.57 -14.05 11.65 -3.05 -0.04 -14.09 16 12 N -0.72 -9.87 5.56 -463.07 -2.57 -12.44 16 13 C 0.14 2.17 5.51 86.38 0.48 2.64 16 14 C -0.10 -1.73 3.93 -10.15 -0.04 -1.77 16 15 C 0.01 0.24 7.53 86.37 0.65 0.89 16 16 N -0.48 -14.80 5.65 -911.74 -5.15 -19.95 16 17 C 0.02 0.79 5.28 85.56 0.45 1.25 16 18 C 0.44 21.35 7.83 87.66 0.69 22.04 16 19 O -0.62 -34.97 16.01 -3.09 -0.05 -35.02 16 20 N -0.58 -30.03 5.29 -306.98 -1.62 -31.65 16 21 C -0.33 -19.19 9.68 84.04 0.81 -18.37 16 22 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 23 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 24 N -0.92 -50.08 13.05 21.66 0.28 -49.79 16 25 Si 0.99 43.15 29.55 68.60 2.03 45.18 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 28 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 29 C 0.01 0.26 7.52 86.41 0.65 0.91 16 30 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.04 0.56 7.36 -2.39 -0.02 0.55 16 33 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.24 5.71 -2.39 -0.01 1.23 16 35 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.05 1.29 5.69 -2.39 -0.01 1.27 16 37 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.41 3.80 8.31 -92.70 -0.77 3.03 16 40 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 41 H 0.06 1.09 7.87 -2.39 -0.02 1.07 16 42 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.07 1.74 7.26 -2.39 -0.02 1.73 16 44 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.11 3.23 8.08 -2.39 -0.02 3.21 16 46 H 0.08 2.32 7.39 -2.39 -0.02 2.31 16 47 H 0.40 19.52 7.90 -92.71 -0.73 18.79 16 48 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 49 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.09 1.48 7.88 -2.39 -0.02 1.46 16 Total: -1.00 -75.68 395.51 -3.01 -78.69 By element: Atomic # 1 Polarization: 35.75 SS G_CDS: -0.54 Total: 35.21 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 6.26 Total: 14.06 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -9.06 Total: -113.84 kcal Atomic # 8 Polarization: -57.61 SS G_CDS: -1.69 Total: -59.30 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -75.68 -3.01 -78.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268874738.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.619 kcal (2) G-P(sol) polarization free energy of solvation -75.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds