Wall clock time and date at job start Tue Mar 31 2020 22:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08995 * 109.46816 * 2 1 4 4 N 1.46500 * 109.46904 * 240.00233 * 2 1 3 5 5 C 1.34770 * 120.00403 * 85.00233 * 4 2 1 6 6 O 1.21286 * 120.00071 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00269 * 179.97438 * 5 4 2 8 8 H 1.08999 * 109.48243 * 55.01927 * 7 5 4 9 9 C 1.53086 * 109.47713 * 294.99645 * 7 5 4 10 10 C 1.53184 * 109.16216 * 182.40656 * 9 7 5 11 11 C 1.53185 * 109.03430 * 56.98321 * 10 9 7 12 12 C 1.53091 * 109.16175 * 303.01916 * 11 10 9 13 13 O 1.42902 * 109.41510 * 57.60908 * 12 11 10 14 14 C 1.52998 * 109.47088 * 120.00039 * 2 1 3 15 15 C 1.53509 * 114.17045 * 300.00163 * 14 2 1 16 16 N 1.47486 * 87.93224 * 220.33117 * 15 14 2 17 17 C 1.46892 * 111.00049 * 138.70395 * 16 15 14 18 18 C 1.50702 * 109.47256 * 170.00106 * 17 16 15 19 19 O 1.21293 * 119.99490 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00426 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00363 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00037 * 0.02562 * 21 20 18 23 23 C 1.38945 * 120.00220 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99901 * 179.72435 * 23 21 20 25 25 Si 1.86800 * 120.00194 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72227 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72075 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72111 * 25 23 21 29 29 C 1.47475 * 87.83462 * 27.00886 * 16 15 14 30 30 H 1.08999 * 109.46638 * 299.99849 * 1 2 3 31 31 H 1.08999 * 109.46980 * 60.00318 * 1 2 3 32 32 H 1.08995 * 109.46816 * 179.97438 * 1 2 3 33 33 H 0.97003 * 120.00000 * 264.99861 * 4 2 1 34 34 H 1.09001 * 109.52527 * 302.31004 * 9 7 5 35 35 H 1.09000 * 109.52529 * 62.44087 * 9 7 5 36 36 H 1.08999 * 109.54700 * 176.84499 * 10 9 7 37 37 H 1.08997 * 109.54583 * 297.11536 * 10 9 7 38 38 H 1.09000 * 109.52370 * 62.92188 * 11 10 9 39 39 H 1.08996 * 109.52298 * 183.11144 * 11 10 9 40 40 H 1.08997 * 109.48153 * 177.58871 * 12 11 10 41 41 H 1.09000 * 109.48162 * 297.61450 * 12 11 10 42 42 H 1.09005 * 113.38399 * 73.07816 * 14 2 1 43 43 H 1.08998 * 113.47864 * 105.56085 * 15 14 2 44 44 H 1.09008 * 113.47875 * 335.09535 * 15 14 2 45 45 H 1.09000 * 109.47778 * 49.99714 * 17 16 15 46 46 H 1.09007 * 109.47317 * 290.00011 * 17 16 15 47 47 H 0.97000 * 120.00112 * 359.97438 * 20 18 17 48 48 H 0.96999 * 119.99993 * 180.27541 * 24 23 21 49 49 H 1.09005 * 113.47808 * 87.75993 * 29 16 15 50 50 H 1.09003 * 113.47531 * 218.22483 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8583 1.1584 -2.4117 7 6 2.6500 -0.7285 -3.5875 8 1 2.0291 -1.6031 -3.7816 9 6 4.0989 -1.1700 -3.3656 10 6 4.6221 -1.8374 -4.6414 11 6 4.4857 -0.8567 -5.8102 12 6 3.0218 -0.4273 -5.9376 13 8 2.5895 0.1572 -4.7073 14 6 2.0401 -0.7212 1.2492 15 6 1.5894 -0.0839 2.5710 16 7 2.9424 -0.3452 3.0966 17 6 3.4289 0.7932 3.8873 18 6 4.6942 0.4014 4.6061 19 8 5.1459 -0.7164 4.4730 20 7 5.3233 1.2927 5.3975 21 6 6.4741 0.9361 6.0517 22 1 6.8768 -0.0589 5.9326 23 6 7.1229 1.8551 6.8672 24 7 8.2230 1.5116 7.4986 25 14 6.4268 3.5764 7.0727 26 1 7.0042 4.4706 6.0372 27 1 4.9500 3.5342 6.9228 28 1 6.7729 4.0926 8.4214 29 6 3.4348 -0.2733 1.7083 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 2.2491 -1.6318 -1.1527 34 1 4.7129 -0.3004 -3.1314 35 1 4.1412 -1.8792 -2.5389 36 1 5.6708 -2.1040 -4.5097 37 1 4.0395 -2.7350 -4.8486 38 1 5.1074 0.0192 -5.6253 39 1 4.8043 -1.3426 -6.7324 40 1 2.9259 0.3035 -6.7406 41 1 2.4058 -1.2979 -6.1628 42 1 1.9097 -1.8027 1.2079 43 1 0.8088 -0.6482 3.0813 44 1 1.3548 0.9771 2.4838 45 1 2.6708 1.0798 4.6162 46 1 3.6328 1.6348 3.2253 47 1 4.9618 2.1865 5.5042 48 1 8.6738 2.1519 8.0710 49 1 3.6928 0.7371 1.3908 50 1 4.2183 -0.9982 1.4874 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276370590.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:13 Heat of formation + Delta-G solvation = -80.876627 kcal Electronic energy + Delta-G solvation = -29638.543350 eV Core-core repulsion = 25473.959585 eV Total energy + Delta-G solvation = -4164.583765 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.89505 -40.21490 -38.76435 -37.93366 -35.52236 -34.10334 -33.90931 -32.52470 -31.66810 -31.00400 -29.53914 -26.55364 -25.90091 -25.59956 -24.39114 -23.95512 -22.06755 -20.93361 -20.69675 -19.78253 -19.34170 -18.37504 -17.68173 -17.11464 -16.24488 -16.15276 -16.05096 -15.50675 -15.30140 -15.05006 -14.93172 -14.81468 -14.64279 -14.43762 -14.07336 -13.60365 -13.26775 -13.16334 -13.11937 -13.06077 -12.74636 -12.61461 -12.47491 -12.20532 -12.03502 -11.88026 -11.70012 -11.55108 -11.50955 -11.20200 -11.04889 -10.91576 -10.83264 -10.58276 -10.53989 -10.01396 -9.95860 -9.80875 -9.54309 -9.38448 -8.86550 -8.31314 -8.15481 -6.29123 -3.80367 2.34220 2.49062 3.03813 3.07984 3.16126 3.60542 3.76119 3.89845 4.11559 4.12627 4.26517 4.33241 4.34810 4.47995 4.50041 4.57698 4.67474 4.73027 4.94227 4.94902 5.06939 5.10405 5.13988 5.15704 5.21610 5.30331 5.31380 5.34957 5.44780 5.46204 5.53432 5.55612 5.56640 5.58339 5.62881 5.69351 5.80283 5.85554 5.94692 5.96173 6.05501 6.25565 6.43806 6.66977 7.07024 7.21206 7.60389 7.96137 8.16356 8.62825 8.97665 9.44814 9.86781 10.84153 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014426 B = 0.002130 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.518800 B =13143.952128 C =14020.821741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.155 3.845 3 H 0.089 0.911 4 N -0.721 5.721 5 C 0.521 3.479 6 O -0.518 6.518 7 C 0.075 3.925 8 H 0.082 0.918 9 C -0.147 4.147 10 C -0.121 4.121 11 C -0.160 4.160 12 C 0.060 3.940 13 O -0.355 6.355 14 C -0.126 4.126 15 C 0.006 3.994 16 N -0.440 5.440 17 C 0.005 3.995 18 C 0.456 3.544 19 O -0.557 6.557 20 N -0.594 5.594 21 C -0.303 4.303 22 H 0.119 0.881 23 C 0.040 3.960 24 N -0.883 5.883 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.276 1.276 29 C 0.010 3.990 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.401 0.599 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.052 0.948 42 H 0.108 0.892 43 H 0.089 0.911 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.061 0.939 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.068 0.932 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.361 -4.787 -25.062 29.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.050 3.950 3 H 0.107 0.893 4 N -0.374 5.374 5 C 0.306 3.694 6 O -0.393 6.393 7 C 0.014 3.986 8 H 0.100 0.900 9 C -0.185 4.185 10 C -0.159 4.159 11 C -0.198 4.198 12 C -0.017 4.017 13 O -0.273 6.273 14 C -0.145 4.145 15 C -0.124 4.124 16 N -0.161 5.161 17 C -0.127 4.127 18 C 0.241 3.759 19 O -0.438 6.438 20 N -0.234 5.234 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.523 5.523 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.202 1.202 29 C -0.119 4.119 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.235 0.765 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.117 0.883 41 H 0.070 0.930 42 H 0.126 0.874 43 H 0.107 0.893 44 H 0.088 0.912 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.202 0.798 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.985 -4.991 -24.569 29.208 hybrid contribution -0.222 1.511 -0.055 1.528 sum -15.207 -3.480 -24.624 29.150 Atomic orbital electron populations 1.22146 0.94832 1.02341 1.02690 1.20997 0.94237 0.97144 0.82611 0.89254 1.45950 1.67961 1.14152 1.09318 1.20144 0.77849 0.87392 0.84051 1.90735 1.48340 1.15645 1.84541 1.21884 0.97045 0.92785 0.86887 0.89986 1.22163 0.95112 1.02118 0.99155 1.21588 1.02166 0.98064 0.94039 1.22232 0.97915 1.00383 0.99230 1.22667 0.93844 0.98811 0.86381 1.88069 1.86236 1.37493 1.15480 1.23046 0.97383 1.01180 0.92879 1.23848 0.94771 1.00010 0.93732 1.68816 1.02499 1.36160 1.08643 1.22552 0.98241 0.93119 0.98803 1.19565 0.86256 0.86331 0.83729 1.90559 1.67194 1.20743 1.65297 1.42228 1.24927 1.12815 1.43474 1.19418 0.98910 1.01889 1.22979 0.86333 1.25033 0.96059 0.98374 0.96779 1.69622 1.17361 1.35653 1.29665 0.86673 0.79089 0.84757 0.78872 1.19673 1.19528 1.20171 1.23930 0.96992 1.01364 0.89601 0.91248 0.92125 0.92232 0.76472 0.90146 0.89966 0.90720 0.91504 0.90707 0.90589 0.88337 0.93021 0.87356 0.89289 0.91212 0.89228 0.92135 0.79785 0.91657 0.91378 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.29 37.16 0.35 -0.97 16 2 C 0.15 1.40 2.47 -67.93 -0.17 1.24 16 3 H 0.09 1.01 7.33 -51.93 -0.38 0.63 16 4 N -0.72 -5.89 5.04 -53.80 -0.27 -6.16 16 5 C 0.52 5.63 7.14 -10.99 -0.08 5.55 16 6 O -0.52 -8.00 16.17 -14.30 -0.23 -8.23 16 7 C 0.08 0.63 3.05 -27.84 -0.09 0.55 16 8 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 9 C -0.15 -1.02 5.37 -26.59 -0.14 -1.16 16 10 C -0.12 -0.66 6.03 -26.54 -0.16 -0.82 16 11 C -0.16 -0.92 6.14 -26.59 -0.16 -1.08 16 12 C 0.06 0.40 6.84 37.20 0.25 0.65 16 13 O -0.35 -3.76 9.94 -55.09 -0.55 -4.30 16 14 C -0.13 -1.20 3.64 -90.09 -0.33 -1.52 16 15 C 0.01 0.07 6.33 -7.55 -0.05 0.02 16 16 N -0.44 -6.81 5.82 -246.09 -1.43 -8.24 16 17 C 0.01 0.08 5.30 -4.98 -0.03 0.06 16 18 C 0.46 10.59 7.85 -10.99 -0.09 10.51 16 19 O -0.56 -15.35 16.01 5.55 0.09 -15.26 16 20 N -0.59 -14.43 5.09 -10.96 -0.06 -14.49 16 21 C -0.30 -8.70 10.16 -14.94 -0.15 -8.86 16 22 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -26.06 13.96 55.50 0.77 -25.29 16 25 Si 0.88 19.64 27.74 -169.99 -4.72 14.93 16 26 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 27 H -0.27 -5.49 6.51 56.52 0.37 -5.13 16 28 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 29 C 0.01 0.13 7.28 -7.55 -0.05 0.08 16 30 H 0.07 0.51 7.48 -51.93 -0.39 0.12 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.40 2.21 8.45 -40.82 -0.34 1.86 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.44 7.99 -51.93 -0.41 0.02 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.07 0.67 7.87 -51.92 -0.41 0.26 16 45 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 46 H 0.06 0.89 7.30 -51.93 -0.38 0.51 16 47 H 0.37 7.87 5.76 -40.82 -0.23 7.64 16 48 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 49 H 0.07 0.89 7.21 -51.93 -0.37 0.51 16 50 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 401.90 15.07 6.06 6.06 Total: -1.00 -37.28 401.90 -9.72 -47.00 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -8.40 Total: 8.72 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -0.99 Total: 5.26 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -0.98 Total: -54.18 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.69 Total: -27.79 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.72 Total: 14.93 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.28 -9.72 -47.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276370590.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.872 kcal (2) G-P(sol) polarization free energy of solvation -37.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds