Wall clock time and date at job start Tue Mar 31 2020 22:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08995 * 109.46816 * 2 1 4 4 N 1.46500 * 109.46904 * 240.00233 * 2 1 3 5 5 C 1.34770 * 120.00403 * 85.00233 * 4 2 1 6 6 O 1.21286 * 120.00071 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00269 * 179.97438 * 5 4 2 8 8 H 1.08999 * 109.48243 * 55.01927 * 7 5 4 9 9 C 1.53086 * 109.47713 * 294.99645 * 7 5 4 10 10 C 1.53184 * 109.16216 * 182.40656 * 9 7 5 11 11 C 1.53185 * 109.03430 * 56.98321 * 10 9 7 12 12 C 1.53091 * 109.16175 * 303.01916 * 11 10 9 13 13 O 1.42902 * 109.41510 * 57.60908 * 12 11 10 14 14 C 1.52998 * 109.47088 * 120.00039 * 2 1 3 15 15 C 1.53509 * 114.17045 * 300.00163 * 14 2 1 16 16 N 1.47486 * 87.93224 * 220.33117 * 15 14 2 17 17 C 1.46892 * 111.00049 * 138.70395 * 16 15 14 18 18 C 1.50702 * 109.47256 * 170.00106 * 17 16 15 19 19 O 1.21293 * 119.99490 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00426 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00363 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00037 * 0.02562 * 21 20 18 23 23 C 1.38945 * 120.00220 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99901 * 179.72435 * 23 21 20 25 25 Si 1.86800 * 120.00194 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72227 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72075 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72111 * 25 23 21 29 29 C 1.47475 * 87.83462 * 27.00886 * 16 15 14 30 30 H 1.08999 * 109.46638 * 299.99849 * 1 2 3 31 31 H 1.08999 * 109.46980 * 60.00318 * 1 2 3 32 32 H 1.08995 * 109.46816 * 179.97438 * 1 2 3 33 33 H 0.97003 * 120.00000 * 264.99861 * 4 2 1 34 34 H 1.09001 * 109.52527 * 302.31004 * 9 7 5 35 35 H 1.09000 * 109.52529 * 62.44087 * 9 7 5 36 36 H 1.08999 * 109.54700 * 176.84499 * 10 9 7 37 37 H 1.08997 * 109.54583 * 297.11536 * 10 9 7 38 38 H 1.09000 * 109.52370 * 62.92188 * 11 10 9 39 39 H 1.08996 * 109.52298 * 183.11144 * 11 10 9 40 40 H 1.08997 * 109.48153 * 177.58871 * 12 11 10 41 41 H 1.09000 * 109.48162 * 297.61450 * 12 11 10 42 42 H 1.09005 * 113.38399 * 73.07816 * 14 2 1 43 43 H 1.08998 * 113.47864 * 105.56085 * 15 14 2 44 44 H 1.09008 * 113.47875 * 335.09535 * 15 14 2 45 45 H 1.09000 * 109.47778 * 49.99714 * 17 16 15 46 46 H 1.09007 * 109.47317 * 290.00011 * 17 16 15 47 47 H 0.97000 * 120.00112 * 359.97438 * 20 18 17 48 48 H 0.96999 * 119.99993 * 180.27541 * 24 23 21 49 49 H 1.09005 * 113.47808 * 87.75993 * 29 16 15 50 50 H 1.09003 * 113.47531 * 218.22483 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8583 1.1584 -2.4117 7 6 2.6500 -0.7285 -3.5875 8 1 2.0291 -1.6031 -3.7816 9 6 4.0989 -1.1700 -3.3656 10 6 4.6221 -1.8374 -4.6414 11 6 4.4857 -0.8567 -5.8102 12 6 3.0218 -0.4273 -5.9376 13 8 2.5895 0.1572 -4.7073 14 6 2.0401 -0.7212 1.2492 15 6 1.5894 -0.0839 2.5710 16 7 2.9424 -0.3452 3.0966 17 6 3.4289 0.7932 3.8873 18 6 4.6942 0.4014 4.6061 19 8 5.1459 -0.7164 4.4730 20 7 5.3233 1.2927 5.3975 21 6 6.4741 0.9361 6.0517 22 1 6.8768 -0.0589 5.9326 23 6 7.1229 1.8551 6.8672 24 7 8.2230 1.5116 7.4986 25 14 6.4268 3.5764 7.0727 26 1 7.0042 4.4706 6.0372 27 1 4.9500 3.5342 6.9228 28 1 6.7729 4.0926 8.4214 29 6 3.4348 -0.2733 1.7083 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 2.2491 -1.6318 -1.1527 34 1 4.7129 -0.3004 -3.1314 35 1 4.1412 -1.8792 -2.5389 36 1 5.6708 -2.1040 -4.5097 37 1 4.0395 -2.7350 -4.8486 38 1 5.1074 0.0192 -5.6253 39 1 4.8043 -1.3426 -6.7324 40 1 2.9259 0.3035 -6.7406 41 1 2.4058 -1.2979 -6.1628 42 1 1.9097 -1.8027 1.2079 43 1 0.8088 -0.6482 3.0813 44 1 1.3548 0.9771 2.4838 45 1 2.6708 1.0798 4.6162 46 1 3.6328 1.6348 3.2253 47 1 4.9618 2.1865 5.5042 48 1 8.6738 2.1519 8.0710 49 1 3.6928 0.7371 1.3908 50 1 4.2183 -0.9982 1.4874 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276370590.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:12 Heat of formation + Delta-G solvation = -111.501011 kcal Electronic energy + Delta-G solvation = -29639.871323 eV Core-core repulsion = 25473.959585 eV Total energy + Delta-G solvation = -4165.911738 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.79211 -41.09811 -39.90402 -39.34868 -36.44114 -35.95295 -34.65989 -33.78070 -33.25126 -31.87616 -30.53976 -27.67700 -26.98105 -26.52784 -25.44855 -24.86973 -23.05889 -21.67234 -21.28010 -21.25622 -20.64112 -20.23649 -18.51158 -17.87072 -17.78483 -16.98791 -16.85513 -16.71752 -16.53321 -16.31234 -15.98076 -15.68492 -15.42193 -15.36454 -15.01064 -14.88247 -14.76162 -14.41138 -14.23089 -13.92653 -13.74560 -13.66135 -13.63406 -13.34020 -13.04431 -12.76703 -12.71177 -12.51055 -12.43205 -12.20112 -12.01074 -11.97459 -11.88367 -11.83138 -11.53374 -11.47852 -11.39640 -10.73293 -10.49009 -10.47457 -10.25942 -10.17769 -9.70564 -8.42728 -6.03494 1.28282 1.33690 1.42570 1.53476 1.81158 1.94877 2.21251 2.65934 3.00154 3.12789 3.21180 3.37612 3.61145 3.67985 3.76795 3.87713 4.00058 4.02412 4.05370 4.14251 4.18355 4.21116 4.31181 4.37680 4.44116 4.46347 4.47844 4.51199 4.62856 4.77134 4.77516 4.81362 4.83480 4.85003 4.99346 5.00737 5.08001 5.15454 5.18404 5.31078 5.34374 5.39557 5.51919 5.52282 5.90223 6.03641 6.10620 6.54074 6.58629 6.87165 7.21182 7.38628 7.96506 8.75029 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014426 B = 0.002130 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.518800 B =13143.952128 C =14020.821741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.159 3.841 3 H 0.067 0.933 4 N -0.707 5.707 5 C 0.517 3.483 6 O -0.573 6.573 7 C 0.077 3.923 8 H 0.113 0.887 9 C -0.145 4.145 10 C -0.119 4.119 11 C -0.159 4.159 12 C 0.054 3.946 13 O -0.392 6.392 14 C -0.098 4.098 15 C 0.013 3.987 16 N -0.477 5.477 17 C 0.017 3.983 18 C 0.452 3.548 19 O -0.609 6.609 20 N -0.594 5.594 21 C -0.328 4.328 22 H 0.054 0.946 23 C -0.016 4.016 24 N -0.934 5.934 25 Si 0.965 3.035 26 H -0.258 1.258 27 H -0.231 1.231 28 H -0.273 1.273 29 C 0.002 3.998 30 H 0.081 0.919 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.416 0.584 34 H 0.053 0.947 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.123 0.877 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.119 0.881 46 H 0.087 0.913 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.068 0.932 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.273 -4.113 -26.070 32.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.054 3.946 3 H 0.086 0.914 4 N -0.360 5.360 5 C 0.303 3.697 6 O -0.451 6.451 7 C 0.016 3.984 8 H 0.130 0.870 9 C -0.183 4.183 10 C -0.157 4.157 11 C -0.196 4.196 12 C -0.022 4.022 13 O -0.311 6.311 14 C -0.117 4.117 15 C -0.116 4.116 16 N -0.199 5.199 17 C -0.114 4.114 18 C 0.240 3.760 19 O -0.493 6.493 20 N -0.237 5.237 21 C -0.457 4.457 22 H 0.072 0.928 23 C -0.215 4.215 24 N -0.575 5.575 25 Si 0.784 3.216 26 H -0.183 1.183 27 H -0.155 1.155 28 H -0.198 1.198 29 C -0.127 4.127 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.254 0.746 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.090 0.910 42 H 0.141 0.859 43 H 0.123 0.877 44 H 0.106 0.894 45 H 0.137 0.863 46 H 0.105 0.895 47 H 0.224 0.776 48 H 0.089 0.911 49 H 0.086 0.914 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.919 -4.362 -25.587 31.541 hybrid contribution 0.750 1.154 0.222 1.394 sum -17.169 -3.208 -25.364 30.796 Atomic orbital electron populations 1.22090 0.93469 1.03364 1.02431 1.20890 0.95121 0.96011 0.82566 0.91435 1.45855 1.66859 1.14781 1.08507 1.20685 0.76944 0.86868 0.85196 1.90704 1.50943 1.17986 1.85464 1.21998 0.98143 0.92876 0.85405 0.86998 1.22161 0.93832 1.01554 1.00751 1.21615 1.02664 0.98451 0.92933 1.22227 0.97074 0.99966 1.00368 1.22875 0.94615 0.99612 0.85120 1.88020 1.86758 1.39357 1.16996 1.22880 0.94270 1.01915 0.92660 1.23942 0.92613 1.01539 0.93484 1.68769 1.05384 1.36220 1.09566 1.22485 0.95074 0.94332 0.99539 1.20909 0.87481 0.85237 0.82383 1.90530 1.68999 1.23139 1.66620 1.42075 1.23919 1.14023 1.43657 1.18992 1.01377 1.00027 1.25303 0.92764 1.26117 0.95959 1.04072 0.95320 1.69803 1.19184 1.38064 1.30458 0.85369 0.80419 0.76726 0.79039 1.18294 1.15474 1.19839 1.23980 0.98514 1.00986 0.89253 0.90052 0.93875 0.90525 0.74644 0.92795 0.88255 0.90369 0.89473 0.92535 0.88590 0.88003 0.91034 0.85856 0.87659 0.89417 0.86265 0.89506 0.77577 0.91137 0.91423 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.29 71.99 0.67 -1.45 16 2 C 0.16 2.59 2.47 44.99 0.11 2.70 16 3 H 0.07 1.46 7.33 -2.39 -0.02 1.44 16 4 N -0.71 -10.49 5.04 -442.53 -2.23 -12.72 16 5 C 0.52 10.93 7.14 87.66 0.63 11.56 16 6 O -0.57 -18.08 16.17 15.94 0.26 -17.83 16 7 C 0.08 1.20 3.05 29.88 0.09 1.29 16 8 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 9 C -0.14 -1.86 5.37 30.68 0.16 -1.69 16 10 C -0.12 -1.09 6.03 30.72 0.19 -0.90 16 11 C -0.16 -1.63 6.14 30.69 0.19 -1.44 16 12 C 0.05 0.66 6.84 72.01 0.49 1.15 16 13 O -0.39 -8.22 9.94 -129.99 -1.29 -9.51 16 14 C -0.10 -1.63 3.64 -10.45 -0.04 -1.66 16 15 C 0.01 0.23 6.33 83.57 0.53 0.76 16 16 N -0.48 -13.91 5.82 -932.48 -5.43 -19.34 16 17 C 0.02 0.55 5.30 85.56 0.45 1.00 16 18 C 0.45 21.10 7.85 87.66 0.69 21.79 16 19 O -0.61 -34.95 16.01 -3.07 -0.05 -35.00 16 20 N -0.59 -28.81 5.09 -306.99 -1.56 -30.38 16 21 C -0.33 -19.61 10.16 84.04 0.85 -18.75 16 22 H 0.05 3.86 7.39 -2.91 -0.02 3.84 16 23 C -0.02 -0.91 5.50 84.92 0.47 -0.45 16 24 N -0.93 -57.08 13.96 21.66 0.30 -56.78 16 25 Si 0.96 39.52 27.74 68.60 1.90 41.42 16 26 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 27 H -0.23 -7.99 6.51 99.48 0.65 -7.34 16 28 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 29 C 0.00 0.04 7.28 83.57 0.61 0.65 16 30 H 0.08 0.92 7.48 -2.39 -0.02 0.90 16 31 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.42 3.58 8.45 -92.71 -0.78 2.80 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.10 0.88 7.99 -2.39 -0.02 0.86 16 36 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.07 0.57 8.14 -2.39 -0.02 0.56 16 42 H 0.12 1.74 8.14 -2.38 -0.02 1.72 16 43 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.09 1.32 7.87 -2.38 -0.02 1.30 16 45 H 0.12 3.04 8.08 -2.39 -0.02 3.02 16 46 H 0.09 2.28 7.30 -2.38 -0.02 2.26 16 47 H 0.39 15.61 5.76 -92.71 -0.53 15.07 16 48 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 49 H 0.07 1.71 7.21 -2.38 -0.02 1.69 16 50 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -89.39 401.90 -2.44 -91.83 By element: Atomic # 1 Polarization: 34.17 SS G_CDS: -0.43 Total: 33.74 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 6.09 Total: 14.56 kcal Atomic # 7 Polarization: -110.30 SS G_CDS: -8.92 Total: -119.21 kcal Atomic # 8 Polarization: -61.25 SS G_CDS: -1.08 Total: -62.34 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 1.90 Total: 41.42 kcal Total: -89.39 -2.44 -91.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276370590.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.674 kcal (2) G-P(sol) polarization free energy of solvation -89.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds