Wall clock time and date at job start Tue Mar 31 2020 23:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34775 * 120.00194 * 2 1 4 4 O 1.21288 * 119.99338 * 355.29602 * 3 2 1 5 5 C 1.50695 * 120.00765 * 175.29532 * 3 2 1 6 6 C 1.50708 * 112.84781 * 305.29097 * 5 3 2 7 7 O 1.21276 * 120.00000 * 119.70681 * 6 5 3 8 8 N 1.34776 * 119.99693 * 299.70768 * 6 5 3 9 9 C 1.47156 * 120.98041 * 353.41557 * 8 6 5 10 10 C 1.53298 * 108.41403 * 230.53846 * 9 8 6 11 11 O 1.42977 * 109.21896 * 307.76021 * 10 9 8 12 12 C 1.42956 * 114.20038 * 62.51779 * 11 10 9 13 13 H 1.09008 * 109.51566 * 57.36361 * 12 11 10 14 14 C 1.53007 * 109.51549 * 177.51478 * 12 11 10 15 15 H 1.09000 * 109.47195 * 174.74872 * 14 12 11 16 16 C 1.53004 * 109.46769 * 54.74906 * 14 12 11 17 17 N 1.46495 * 109.46869 * 294.75309 * 14 12 11 18 18 C 1.36940 * 119.99739 * 204.99747 * 17 14 12 19 19 H 1.07997 * 120.00005 * 359.97438 * 18 17 14 20 20 C 1.38820 * 120.00093 * 179.97438 * 18 17 14 21 21 N 1.31617 * 119.99490 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99940 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46853 * 60.00209 * 22 20 18 24 24 H 1.48502 * 109.46924 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47389 * 300.00013 * 22 20 18 26 26 C 1.47147 * 120.98084 * 173.43920 * 8 6 5 27 27 C 1.53781 * 113.61336 * 76.48033 * 5 3 2 28 28 C 1.53947 * 87.01860 * 89.23380 * 27 5 3 29 29 C 1.53782 * 113.61933 * 174.09174 * 5 3 2 30 30 H 1.08996 * 109.47840 * 59.99995 * 1 2 3 31 31 H 1.09005 * 109.47252 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47417 * 299.99379 * 1 2 3 33 33 H 0.97004 * 120.00478 * 180.02562 * 2 1 3 34 34 H 1.08990 * 109.68700 * 350.28175 * 9 8 6 35 35 H 1.08998 * 109.68149 * 110.80371 * 9 8 6 36 36 H 1.09000 * 109.51191 * 67.64201 * 10 9 8 37 37 H 1.08996 * 109.51288 * 187.79724 * 10 9 8 38 38 H 1.09004 * 109.46924 * 300.00315 * 16 14 12 39 39 H 1.08999 * 109.47333 * 60.00120 * 16 14 12 40 40 H 1.08998 * 109.46836 * 180.02562 * 16 14 12 41 41 H 0.96997 * 120.00689 * 24.99308 * 17 14 12 42 42 H 0.96999 * 119.99322 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.68576 * 249.16312 * 26 8 6 44 44 H 1.08999 * 109.68061 * 9.71830 * 26 8 6 45 45 H 1.09003 * 113.61462 * 203.75227 * 27 5 3 46 46 H 1.09001 * 113.61591 * 334.65461 * 27 5 3 47 47 H 1.09003 * 113.54237 * 270.81421 * 28 27 5 48 48 H 1.09001 * 113.67064 * 139.93415 * 28 27 5 49 49 H 1.09001 * 113.61193 * 25.34770 * 29 5 3 50 50 H 1.08994 * 113.60937 * 156.16646 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5354 2.2157 -0.0861 5 6 3.6420 1.1695 0.1070 6 6 4.1441 0.4152 1.3113 7 8 4.8728 -0.5432 1.1660 8 7 3.7832 0.8058 2.5497 9 6 3.0200 2.0463 2.7604 10 6 3.7281 2.8731 3.8397 11 8 3.9437 2.0557 4.9928 12 6 4.7954 0.9308 4.7628 13 1 5.7583 1.2744 4.3847 14 6 5.0022 0.1697 6.0739 15 1 5.5738 -0.7381 5.8808 16 6 3.6420 -0.2009 6.6684 17 7 5.7342 1.0159 7.0195 18 6 6.4743 0.4436 8.0195 19 1 6.5180 -0.6316 8.1112 20 6 7.1684 1.2455 8.9153 21 7 7.1154 2.5558 8.8031 22 14 8.1774 0.4647 10.2797 23 1 9.2272 -0.4012 9.6854 24 1 8.8169 1.5295 11.0936 25 1 7.2907 -0.3546 11.1443 26 6 4.1411 0.0048 3.7310 27 6 4.3533 0.7852 -1.2011 28 6 4.3256 2.2815 -1.5617 29 6 4.2688 2.5649 -0.0512 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8901 33 1 1.9500 -0.8400 -0.0004 34 1 2.9786 2.6142 1.8311 35 1 2.0090 1.8041 3.0879 36 1 4.6870 3.2243 3.4587 37 1 3.1075 3.7276 4.1094 38 1 3.0703 0.7069 6.8615 39 1 3.0973 -0.8305 5.9649 40 1 3.7893 -0.7427 7.6027 41 1 5.6947 1.9816 6.9374 42 1 7.6007 3.1160 9.4288 43 1 3.2432 -0.4429 4.1568 44 1 4.8422 -0.7790 3.4443 45 1 5.3584 0.3905 -1.0519 46 1 3.7475 0.1646 -1.8615 47 1 3.4253 2.5839 -2.0968 48 1 5.2406 2.6339 -2.0379 49 1 3.5948 3.3790 0.2153 50 1 5.2500 2.6580 0.4141 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276812728.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:41 Heat of formation + Delta-G solvation = -68.622906 kcal Electronic energy + Delta-G solvation = -31688.838141 eV Core-core repulsion = 27524.785738 eV Total energy + Delta-G solvation = -4164.052404 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.76578 -39.74861 -38.56395 -37.29341 -35.55534 -35.00631 -34.58533 -32.50515 -30.40470 -29.16724 -28.37014 -27.38469 -26.23717 -25.82955 -24.59992 -23.45695 -22.55024 -21.88423 -20.28682 -19.70752 -19.45971 -18.14551 -17.20388 -16.70840 -16.60681 -16.22567 -15.98152 -15.52514 -15.38575 -15.26147 -15.01899 -14.56221 -14.47214 -14.22622 -13.71384 -13.36471 -13.34478 -13.22372 -12.93904 -12.85354 -12.69575 -12.52404 -12.42373 -12.11374 -11.95882 -11.65305 -11.38398 -11.31822 -11.13543 -10.87073 -10.80111 -10.72797 -10.53499 -10.35736 -10.25407 -10.03243 -9.84342 -9.76218 -9.63671 -9.57048 -8.88405 -8.54345 -6.92791 -5.72520 -3.01395 2.04336 2.26191 2.67045 2.73505 3.46143 3.50428 3.51464 3.96802 4.02687 4.05011 4.16472 4.26299 4.38283 4.58578 4.76401 4.80438 4.91571 4.99647 5.10086 5.12283 5.16221 5.26720 5.30553 5.38282 5.40532 5.45549 5.54896 5.58979 5.60913 5.61899 5.66104 5.74247 5.79089 5.91796 5.95537 5.97634 5.98066 6.18110 6.31444 6.45880 6.64477 6.81581 6.96181 7.12610 7.17246 7.47578 7.70714 7.71928 7.86253 8.45660 9.57399 10.14949 10.51586 11.49855 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020434 B = 0.002735 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.954157 B =10233.636434 C =10478.502631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.729 5.729 3 C 0.548 3.452 4 O -0.525 6.525 5 C -0.140 4.140 6 C 0.534 3.466 7 O -0.529 6.529 8 N -0.604 5.604 9 C 0.063 3.937 10 C 0.049 3.951 11 O -0.357 6.357 12 C 0.076 3.924 13 H 0.064 0.936 14 C 0.185 3.815 15 H 0.059 0.941 16 C -0.162 4.162 17 N -0.719 5.719 18 C -0.240 4.240 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.081 3.919 27 C -0.102 4.102 28 C -0.139 4.139 29 C -0.111 4.111 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.405 0.595 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.105 0.895 38 H 0.057 0.943 39 H 0.033 0.967 40 H 0.052 0.948 41 H 0.389 0.611 42 H 0.255 0.745 43 H 0.082 0.918 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.075 0.925 47 H 0.086 0.914 48 H 0.079 0.921 49 H 0.093 0.907 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.442 -2.909 -22.859 26.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.380 5.380 3 C 0.332 3.668 4 O -0.400 6.400 5 C -0.146 4.146 6 C 0.320 3.680 7 O -0.406 6.406 8 N -0.338 5.338 9 C -0.060 4.060 10 C -0.030 4.030 11 O -0.275 6.275 12 C 0.017 3.983 13 H 0.082 0.918 14 C 0.075 3.925 15 H 0.077 0.923 16 C -0.222 4.222 17 N -0.360 5.360 18 C -0.371 4.371 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.041 4.041 27 C -0.140 4.140 28 C -0.176 4.176 29 C -0.149 4.149 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.239 0.761 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.123 0.877 38 H 0.076 0.924 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.223 0.777 42 H 0.065 0.935 43 H 0.100 0.900 44 H 0.119 0.881 45 H 0.124 0.876 46 H 0.094 0.906 47 H 0.105 0.895 48 H 0.098 0.902 49 H 0.111 0.889 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.498 -2.726 -22.657 26.019 hybrid contribution 0.694 -0.539 0.646 1.091 sum -11.804 -3.265 -22.011 25.189 Atomic orbital electron populations 1.21593 0.78838 1.02617 1.02558 1.45742 1.08118 1.08705 1.75466 1.19459 0.87653 0.83954 0.75712 1.90721 1.69326 1.31162 1.48832 1.22396 0.93771 1.01529 0.96942 1.19904 0.80591 0.84129 0.83355 1.90714 1.36102 1.28295 1.85470 1.48154 1.54898 1.24584 1.06113 1.22731 0.95840 0.85801 1.01609 1.22884 0.99883 0.93493 0.86695 1.88106 1.68554 1.38798 1.32060 1.22970 0.92341 0.86552 0.96446 0.91808 1.20191 0.92569 0.92971 0.86816 0.92326 1.22415 0.98745 1.00772 1.00270 1.42344 1.55971 1.05565 1.32164 1.19202 1.21243 0.91580 1.05125 0.91234 1.24739 1.01095 0.95370 0.99666 1.69669 1.46647 1.02379 1.39188 0.86281 0.80089 0.77848 0.82033 1.21300 1.21734 1.21295 1.22552 1.01855 0.94947 0.84759 1.22863 1.01696 0.97464 0.91966 1.22902 1.03145 0.95518 0.96084 1.22921 1.01325 0.93286 0.97360 0.91905 0.90388 0.91916 0.76103 0.88212 0.90692 0.92752 0.87732 0.92429 0.94778 0.92884 0.77656 0.93507 0.90032 0.88113 0.87632 0.90634 0.89504 0.90203 0.88850 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.56 10.71 59.84 0.64 1.20 16 2 N -0.73 -5.96 5.61 -67.08 -0.38 -6.33 16 3 C 0.55 5.62 5.22 -10.99 -0.06 5.56 16 4 O -0.52 -6.54 15.23 5.55 0.08 -6.46 16 5 C -0.14 -1.41 0.56 -156.00 -0.09 -1.49 16 6 C 0.53 6.75 6.54 -10.98 -0.07 6.68 16 7 O -0.53 -8.07 15.51 5.56 0.09 -7.98 16 8 N -0.60 -7.76 3.02 -172.28 -0.52 -8.28 16 9 C 0.06 0.74 5.72 -3.53 -0.02 0.72 16 10 C 0.05 0.64 6.99 37.31 0.26 0.90 16 11 O -0.36 -6.13 9.24 -35.23 -0.33 -6.46 16 12 C 0.08 1.31 2.61 -26.57 -0.07 1.24 16 13 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 14 C 0.19 3.71 2.77 -67.93 -0.19 3.52 16 15 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 16 C -0.16 -2.98 9.06 37.16 0.34 -2.65 16 17 N -0.72 -18.31 5.10 -53.42 -0.27 -18.58 16 18 C -0.24 -6.71 9.93 -15.06 -0.15 -6.86 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.43 13.06 55.49 0.72 -27.70 16 22 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 C 0.08 1.16 5.84 -3.53 -0.02 1.14 16 27 C -0.10 -0.87 6.93 -25.83 -0.18 -1.05 16 28 C -0.14 -1.08 7.80 -25.83 -0.20 -1.28 16 29 C -0.11 -1.02 5.77 -25.92 -0.15 -1.16 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.41 2.89 8.74 -40.82 -0.36 2.53 16 34 H 0.10 1.07 3.49 -51.93 -0.18 0.89 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 1.12 7.55 -51.93 -0.39 0.73 16 39 H 0.03 0.52 6.42 -51.93 -0.33 0.18 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.39 10.71 7.59 -40.82 -0.31 10.41 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.08 1.11 6.27 -51.93 -0.33 0.79 16 44 H 0.10 1.50 7.06 -51.93 -0.37 1.13 16 45 H 0.11 0.98 7.61 -51.93 -0.40 0.58 16 46 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 47 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.09 0.87 6.42 -51.93 -0.33 0.54 16 50 H 0.10 0.87 8.09 -51.93 -0.42 0.45 16 LS Contribution 392.57 15.07 5.92 5.92 Total: -1.00 -33.73 392.57 -7.79 -41.52 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -8.03 Total: 10.83 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -0.05 Total: 6.01 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -0.44 Total: -60.90 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.15 Total: -20.90 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.73 -7.79 -41.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276812728.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.106 kcal (2) G-P(sol) polarization free energy of solvation -33.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds