Wall clock time and date at job start Tue Mar 31 2020 23:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34775 * 120.00194 * 2 1 4 4 O 1.21288 * 119.99338 * 355.29602 * 3 2 1 5 5 C 1.50695 * 120.00765 * 175.29532 * 3 2 1 6 6 C 1.50708 * 112.84781 * 305.29097 * 5 3 2 7 7 O 1.21276 * 120.00000 * 119.70681 * 6 5 3 8 8 N 1.34776 * 119.99693 * 299.70768 * 6 5 3 9 9 C 1.47156 * 120.98041 * 353.41557 * 8 6 5 10 10 C 1.53298 * 108.41403 * 230.53846 * 9 8 6 11 11 O 1.42977 * 109.21896 * 307.76021 * 10 9 8 12 12 C 1.42956 * 114.20038 * 62.51779 * 11 10 9 13 13 H 1.09008 * 109.51566 * 57.36361 * 12 11 10 14 14 C 1.53007 * 109.51549 * 177.51478 * 12 11 10 15 15 H 1.09000 * 109.47195 * 174.74872 * 14 12 11 16 16 C 1.53004 * 109.46769 * 54.74906 * 14 12 11 17 17 N 1.46495 * 109.46869 * 294.75309 * 14 12 11 18 18 C 1.36940 * 119.99739 * 204.99747 * 17 14 12 19 19 H 1.07997 * 120.00005 * 359.97438 * 18 17 14 20 20 C 1.38820 * 120.00093 * 179.97438 * 18 17 14 21 21 N 1.31617 * 119.99490 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99940 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46853 * 60.00209 * 22 20 18 24 24 H 1.48502 * 109.46924 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47389 * 300.00013 * 22 20 18 26 26 C 1.47147 * 120.98084 * 173.43920 * 8 6 5 27 27 C 1.53781 * 113.61336 * 76.48033 * 5 3 2 28 28 C 1.53947 * 87.01860 * 89.23380 * 27 5 3 29 29 C 1.53782 * 113.61933 * 174.09174 * 5 3 2 30 30 H 1.08996 * 109.47840 * 59.99995 * 1 2 3 31 31 H 1.09005 * 109.47252 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47417 * 299.99379 * 1 2 3 33 33 H 0.97004 * 120.00478 * 180.02562 * 2 1 3 34 34 H 1.08990 * 109.68700 * 350.28175 * 9 8 6 35 35 H 1.08998 * 109.68149 * 110.80371 * 9 8 6 36 36 H 1.09000 * 109.51191 * 67.64201 * 10 9 8 37 37 H 1.08996 * 109.51288 * 187.79724 * 10 9 8 38 38 H 1.09004 * 109.46924 * 300.00315 * 16 14 12 39 39 H 1.08999 * 109.47333 * 60.00120 * 16 14 12 40 40 H 1.08998 * 109.46836 * 180.02562 * 16 14 12 41 41 H 0.96997 * 120.00689 * 24.99308 * 17 14 12 42 42 H 0.96999 * 119.99322 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.68576 * 249.16312 * 26 8 6 44 44 H 1.08999 * 109.68061 * 9.71830 * 26 8 6 45 45 H 1.09003 * 113.61462 * 203.75227 * 27 5 3 46 46 H 1.09001 * 113.61591 * 334.65461 * 27 5 3 47 47 H 1.09003 * 113.54237 * 270.81421 * 28 27 5 48 48 H 1.09001 * 113.67064 * 139.93415 * 28 27 5 49 49 H 1.09001 * 113.61193 * 25.34770 * 29 5 3 50 50 H 1.08994 * 113.60937 * 156.16646 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5354 2.2157 -0.0861 5 6 3.6420 1.1695 0.1070 6 6 4.1441 0.4152 1.3113 7 8 4.8728 -0.5432 1.1660 8 7 3.7832 0.8058 2.5497 9 6 3.0200 2.0463 2.7604 10 6 3.7281 2.8731 3.8397 11 8 3.9437 2.0557 4.9928 12 6 4.7954 0.9308 4.7628 13 1 5.7583 1.2744 4.3847 14 6 5.0022 0.1697 6.0739 15 1 5.5738 -0.7381 5.8808 16 6 3.6420 -0.2009 6.6684 17 7 5.7342 1.0159 7.0195 18 6 6.4743 0.4436 8.0195 19 1 6.5180 -0.6316 8.1112 20 6 7.1684 1.2455 8.9153 21 7 7.1154 2.5558 8.8031 22 14 8.1774 0.4647 10.2797 23 1 9.2272 -0.4012 9.6854 24 1 8.8169 1.5295 11.0936 25 1 7.2907 -0.3546 11.1443 26 6 4.1411 0.0048 3.7310 27 6 4.3533 0.7852 -1.2011 28 6 4.3256 2.2815 -1.5617 29 6 4.2688 2.5649 -0.0512 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8901 33 1 1.9500 -0.8400 -0.0004 34 1 2.9786 2.6142 1.8311 35 1 2.0090 1.8041 3.0879 36 1 4.6870 3.2243 3.4587 37 1 3.1075 3.7276 4.1094 38 1 3.0703 0.7069 6.8615 39 1 3.0973 -0.8305 5.9649 40 1 3.7893 -0.7427 7.6027 41 1 5.6947 1.9816 6.9374 42 1 7.6007 3.1160 9.4288 43 1 3.2432 -0.4429 4.1568 44 1 4.8422 -0.7790 3.4443 45 1 5.3584 0.3905 -1.0519 46 1 3.7475 0.1646 -1.8615 47 1 3.4253 2.5839 -2.0968 48 1 5.2406 2.6339 -2.0379 49 1 3.5948 3.3790 0.2153 50 1 5.2500 2.6580 0.4141 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276812728.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:40 Heat of formation + Delta-G solvation = -93.500089 kcal Electronic energy + Delta-G solvation = -31689.916897 eV Core-core repulsion = 27524.785738 eV Total energy + Delta-G solvation = -4165.131159 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.63611 -40.82784 -39.63764 -38.12446 -37.15653 -35.85777 -35.70118 -34.34494 -31.99604 -30.10179 -29.85231 -28.40093 -27.17859 -26.55204 -26.20096 -24.88468 -23.83525 -22.64191 -21.40555 -20.99673 -20.30547 -19.36047 -18.98257 -17.85248 -17.35956 -17.23854 -17.02069 -16.83312 -16.46229 -16.18610 -16.12651 -15.91455 -15.68314 -15.46534 -15.14058 -14.70366 -14.43938 -14.30311 -14.06602 -13.94775 -13.66835 -13.56200 -13.31497 -13.18887 -13.08006 -12.88052 -12.80116 -12.52317 -12.44868 -12.41271 -12.22403 -12.04506 -11.89249 -11.65387 -11.63209 -11.46415 -11.19445 -11.08203 -10.92915 -10.76956 -10.24466 -9.69583 -9.00710 -7.91588 -5.20473 1.17539 1.33164 1.47623 1.50862 1.56688 1.66945 2.04509 2.57199 2.73122 3.17443 3.27472 3.38730 3.42165 3.54166 3.56052 3.71463 3.86438 3.90276 3.98178 4.02583 4.22608 4.27645 4.35435 4.41581 4.46212 4.55340 4.58962 4.59707 4.60057 4.72018 4.73440 4.76402 4.87986 4.90897 4.91808 4.93864 4.99466 5.07588 5.15284 5.24693 5.28178 5.32600 5.51847 5.61432 6.10712 6.20319 6.28993 6.29738 6.83286 6.98700 7.35974 8.11561 8.36197 9.31794 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020434 B = 0.002735 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.954157 B =10233.636434 C =10478.502631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.723 5.723 3 C 0.548 3.452 4 O -0.549 6.549 5 C -0.139 4.139 6 C 0.535 3.465 7 O -0.556 6.556 8 N -0.606 5.606 9 C 0.073 3.927 10 C 0.043 3.957 11 O -0.380 6.380 12 C 0.089 3.911 13 H 0.041 0.959 14 C 0.177 3.823 15 H 0.061 0.939 16 C -0.148 4.148 17 N -0.733 5.733 18 C -0.241 4.241 19 H 0.078 0.922 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.973 3.027 23 H -0.278 1.278 24 H -0.297 1.297 25 H -0.278 1.278 26 C 0.092 3.908 27 C -0.099 4.099 28 C -0.128 4.128 29 C -0.115 4.115 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.054 0.946 33 H 0.411 0.589 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.125 0.875 38 H 0.044 0.956 39 H 0.071 0.929 40 H 0.037 0.963 41 H 0.375 0.625 42 H 0.250 0.750 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.094 0.906 49 H 0.091 0.909 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.554 -4.079 -24.251 28.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.373 5.373 3 C 0.332 3.668 4 O -0.427 6.427 5 C -0.146 4.146 6 C 0.323 3.677 7 O -0.434 6.434 8 N -0.338 5.338 9 C -0.049 4.049 10 C -0.034 4.034 11 O -0.298 6.298 12 C 0.029 3.971 13 H 0.059 0.941 14 C 0.068 3.932 15 H 0.079 0.921 16 C -0.208 4.208 17 N -0.373 5.373 18 C -0.372 4.372 19 H 0.096 0.904 20 C -0.269 4.269 21 N -0.620 5.620 22 Si 0.802 3.198 23 H -0.204 1.204 24 H -0.223 1.223 25 H -0.204 1.204 26 C -0.031 4.031 27 C -0.137 4.137 28 C -0.165 4.165 29 C -0.152 4.152 30 H 0.080 0.920 31 H 0.125 0.875 32 H 0.073 0.927 33 H 0.246 0.754 34 H 0.130 0.870 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.143 0.857 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.056 0.944 41 H 0.207 0.793 42 H 0.059 0.941 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.116 0.884 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.113 0.887 49 H 0.110 0.890 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.648 -3.955 -24.086 27.965 hybrid contribution 0.981 -0.194 0.999 1.414 sum -12.667 -4.149 -23.086 26.658 Atomic orbital electron populations 1.21744 0.77630 1.04406 1.02084 1.45791 1.08966 1.08353 1.74206 1.19444 0.87520 0.84177 0.75636 1.90714 1.69636 1.32035 1.50268 1.22451 0.94072 1.01799 0.96237 1.20318 0.79866 0.83752 0.83725 1.90702 1.37295 1.29570 1.85865 1.48194 1.54925 1.24825 1.05873 1.22699 0.95545 0.85144 1.01548 1.23118 1.00438 0.93799 0.86057 1.88063 1.68287 1.39204 1.34293 1.22607 0.91952 0.87083 0.95433 0.94067 1.20431 0.92841 0.92702 0.87233 0.92097 1.22214 0.97665 1.00551 1.00331 1.42530 1.56571 1.05381 1.32841 1.19621 1.20414 0.92026 1.05167 0.90445 1.25563 1.03013 0.95880 1.02438 1.69837 1.48160 1.03749 1.40282 0.85224 0.78650 0.76838 0.79124 1.20381 1.22336 1.20384 1.22313 1.01952 0.94136 0.84654 1.22873 1.01283 0.98295 0.91232 1.22852 1.03945 0.94702 0.95047 1.22963 1.01026 0.92635 0.98620 0.92019 0.87546 0.92715 0.75410 0.87033 0.90079 0.92996 0.85721 0.93726 0.91060 0.94370 0.79326 0.94145 0.88725 0.88588 0.88376 0.89303 0.89400 0.88696 0.89020 0.88884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 10.71 127.77 1.37 2.26 16 2 N -0.72 -10.26 5.61 -484.53 -2.72 -12.98 16 3 C 0.55 10.25 5.22 87.66 0.46 10.71 16 4 O -0.55 -12.79 15.23 -3.06 -0.05 -12.84 16 5 C -0.14 -2.59 0.56 -53.15 -0.03 -2.62 16 6 C 0.54 12.90 6.54 87.66 0.57 13.47 16 7 O -0.56 -16.44 15.51 -3.02 -0.05 -16.49 16 8 N -0.61 -14.79 3.02 -817.35 -2.47 -17.26 16 9 C 0.07 1.60 5.72 86.35 0.49 2.09 16 10 C 0.04 1.10 6.99 72.08 0.50 1.60 16 11 O -0.38 -12.96 9.24 -148.98 -1.38 -14.34 16 12 C 0.09 3.04 2.61 30.70 0.08 3.12 16 13 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 14 C 0.18 7.06 2.77 45.00 0.12 7.19 16 15 H 0.06 2.40 8.08 -2.39 -0.02 2.38 16 16 C -0.15 -5.30 9.06 71.98 0.65 -4.65 16 17 N -0.73 -37.99 5.10 -322.93 -1.65 -39.63 16 18 C -0.24 -13.54 9.93 84.03 0.83 -12.70 16 19 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 20 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 21 N -0.97 -60.60 13.06 21.65 0.28 -60.32 16 22 Si 0.97 46.76 29.55 68.60 2.03 48.79 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 24 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 26 C 0.09 2.54 5.84 86.36 0.50 3.04 16 27 C -0.10 -1.51 6.93 31.18 0.22 -1.30 16 28 C -0.13 -1.74 7.80 31.18 0.24 -1.50 16 29 C -0.11 -1.94 5.77 31.12 0.18 -1.76 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.11 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.41 4.93 8.74 -92.71 -0.81 4.12 16 34 H 0.11 2.23 3.49 -2.39 -0.01 2.22 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.04 1.70 7.55 -2.38 -0.02 1.69 16 39 H 0.07 2.00 6.42 -2.39 -0.02 1.98 16 40 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.37 21.29 7.59 -92.71 -0.70 20.58 16 42 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 43 H 0.09 2.36 6.27 -2.39 -0.01 2.34 16 44 H 0.10 2.77 7.06 -2.39 -0.02 2.75 16 45 H 0.10 1.69 7.61 -2.39 -0.02 1.67 16 46 H 0.09 1.12 8.09 -2.39 -0.02 1.10 16 47 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.09 1.60 6.42 -2.39 -0.02 1.58 16 50 H 0.09 1.62 8.09 -2.39 -0.02 1.60 16 Total: -1.00 -73.01 392.57 0.13 -72.88 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: -0.55 Total: 37.25 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: 6.67 Total: 14.95 kcal Atomic # 7 Polarization: -123.65 SS G_CDS: -6.55 Total: -130.20 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -1.47 Total: -43.66 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -73.01 0.13 -72.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276812728.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.618 kcal (2) G-P(sol) polarization free energy of solvation -73.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds