Wall clock time and date at job start Tue Mar 31 2020 23:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34770 * 119.99959 * 2 1 4 4 O 1.21283 * 120.00062 * 355.29860 * 3 2 1 5 5 C 1.50704 * 120.00206 * 175.29162 * 3 2 1 6 6 C 1.50700 * 112.84858 * 305.28889 * 5 3 2 7 7 O 1.21284 * 119.99732 * 119.70975 * 6 5 3 8 8 N 1.34770 * 120.00200 * 299.70684 * 6 5 3 9 9 C 1.47153 * 120.97929 * 353.41513 * 8 6 5 10 10 C 1.53297 * 108.41784 * 230.54547 * 9 8 6 11 11 O 1.42964 * 109.22089 * 307.68119 * 10 9 8 12 12 C 1.42963 * 114.16783 * 62.58121 * 11 10 9 13 13 H 1.08992 * 109.51381 * 57.33840 * 12 11 10 14 14 C 1.52994 * 109.51389 * 177.44565 * 12 11 10 15 15 H 1.08997 * 109.47689 * 184.99651 * 14 12 11 16 16 C 1.53003 * 109.47294 * 305.00244 * 14 12 11 17 17 N 1.46503 * 109.47414 * 65.00032 * 14 12 11 18 18 C 1.36935 * 120.00497 * 155.00071 * 17 14 12 19 19 H 1.08001 * 119.99732 * 0.02562 * 18 17 14 20 20 C 1.38813 * 120.00244 * 179.97438 * 18 17 14 21 21 N 1.31620 * 119.99773 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99882 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47133 * 90.00443 * 22 20 18 24 24 H 1.48503 * 109.47251 * 209.99787 * 22 20 18 25 25 H 1.48499 * 109.47500 * 330.00267 * 22 20 18 26 26 C 1.47218 * 121.03382 * 173.44374 * 8 6 5 27 27 C 1.53790 * 113.60966 * 76.48336 * 5 3 2 28 28 C 1.53947 * 87.01769 * 89.23000 * 27 5 3 29 29 C 1.53776 * 113.61479 * 174.08797 * 5 3 2 30 30 H 1.09005 * 109.47071 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47115 * 299.99690 * 1 2 3 32 32 H 1.08995 * 109.47044 * 59.99925 * 1 2 3 33 33 H 0.97002 * 119.99864 * 180.02562 * 2 1 3 34 34 H 1.08999 * 109.67944 * 110.80233 * 9 8 6 35 35 H 1.08998 * 109.68324 * 350.28604 * 9 8 6 36 36 H 1.08994 * 109.51487 * 67.60526 * 10 9 8 37 37 H 1.09000 * 109.51195 * 187.71013 * 10 9 8 38 38 H 1.08997 * 109.47379 * 180.02562 * 16 14 12 39 39 H 1.09008 * 109.46629 * 299.99748 * 16 14 12 40 40 H 1.08997 * 109.47237 * 59.99130 * 16 14 12 41 41 H 0.97004 * 119.99797 * 334.99845 * 17 14 12 42 42 H 0.97006 * 119.99519 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.66735 * 9.73197 * 26 8 6 44 44 H 1.09002 * 109.70457 * 249.21186 * 26 8 6 45 45 H 1.09000 * 113.61275 * 203.74791 * 27 5 3 46 46 H 1.08993 * 113.61356 * 334.65254 * 27 5 3 47 47 H 1.09000 * 113.53910 * 270.80852 * 28 27 5 48 48 H 1.09008 * 113.66592 * 139.93083 * 28 27 5 49 49 H 1.09002 * 113.61818 * 25.35242 * 29 5 3 50 50 H 1.08997 * 113.61254 * 156.17228 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5355 2.2157 -0.0861 5 6 3.6421 1.1694 0.1071 6 6 4.1441 0.4152 1.3114 7 8 4.8728 -0.5433 1.1661 8 7 3.7832 0.8058 2.5497 9 6 3.0201 2.0463 2.7604 10 6 3.7282 2.8732 3.8396 11 8 3.9423 2.0566 4.9934 12 6 4.7944 0.9317 4.7644 13 1 5.7573 1.2752 4.3868 14 6 5.0013 0.1718 6.0761 15 1 5.7203 -0.6325 5.9206 16 6 5.5322 1.1314 7.1430 17 7 3.7246 -0.3936 6.5196 18 6 3.7092 -1.4962 7.3315 19 1 4.6382 -1.9488 7.6451 20 6 2.4995 -2.0315 7.7521 21 7 1.3673 -1.4796 7.3703 22 14 2.4785 -3.5361 8.8590 23 1 2.4981 -3.1055 10.2801 24 1 1.2481 -4.3256 8.5980 25 1 3.6726 -4.3734 8.5790 26 6 4.1407 0.0054 3.7324 27 6 4.3534 0.7850 -1.2011 28 6 4.3257 2.2814 -1.5617 29 6 4.2688 2.5647 -0.0512 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.9500 -0.8401 -0.0004 34 1 2.0091 1.8041 3.0879 35 1 2.9788 2.6142 1.8310 36 1 4.6874 3.2239 3.4588 37 1 3.1083 3.7286 4.1081 38 1 5.6800 0.5900 8.0774 39 1 6.4822 1.5520 6.8130 40 1 4.8132 1.9357 7.2985 41 1 2.8901 0.0132 6.2383 42 1 0.5219 -1.8539 7.6640 43 1 4.8421 -0.7785 3.4465 44 1 3.2429 -0.4428 4.1580 45 1 5.3584 0.3904 -1.0519 46 1 3.7476 0.1646 -1.8614 47 1 3.4255 2.5837 -2.0968 48 1 5.2408 2.6338 -2.0379 49 1 3.5950 3.3789 0.2152 50 1 5.2501 2.6579 0.4141 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276812730.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:45 Heat of formation + Delta-G solvation = -92.483697 kcal Electronic energy + Delta-G solvation = -32092.914680 eV Core-core repulsion = 27927.827594 eV Total energy + Delta-G solvation = -4165.087085 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.62176 -40.79717 -39.62460 -38.11006 -37.13333 -35.88025 -35.72755 -34.17119 -31.78700 -30.21584 -29.97801 -28.61413 -27.15649 -26.54080 -25.79146 -24.94639 -23.81767 -22.64607 -21.36871 -21.00124 -20.31407 -19.40414 -18.99351 -17.79358 -17.36595 -17.24853 -17.11368 -16.75569 -16.29250 -16.22109 -16.09432 -15.90074 -15.65281 -15.35172 -15.08802 -14.79432 -14.52090 -14.24250 -14.06074 -13.93171 -13.56705 -13.49096 -13.29881 -13.16728 -13.08916 -12.85321 -12.77352 -12.57895 -12.53205 -12.44746 -12.18149 -12.02409 -11.83636 -11.68849 -11.59241 -11.42788 -11.12983 -11.07952 -10.94573 -10.75605 -10.27905 -9.68385 -8.95542 -7.89834 -5.17225 1.15561 1.36236 1.48217 1.49126 1.57183 1.69646 2.04020 2.58017 2.75745 3.20973 3.29221 3.39477 3.44448 3.53153 3.65131 3.72997 3.90736 3.93843 3.96659 4.07378 4.22589 4.27124 4.30460 4.38686 4.50193 4.54268 4.60196 4.61080 4.70722 4.75109 4.76466 4.83528 4.85087 4.90040 4.93589 4.98072 5.01833 5.09841 5.16963 5.23975 5.25561 5.34793 5.54597 5.61942 6.15817 6.23010 6.25786 6.31734 6.85182 6.95410 7.38632 8.13841 8.39032 9.33325 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013778 B = 0.003526 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.673184 B = 7939.859762 C = 8801.481667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.726 5.726 3 C 0.545 3.455 4 O -0.549 6.549 5 C -0.141 4.141 6 C 0.534 3.466 7 O -0.560 6.560 8 N -0.603 5.603 9 C 0.067 3.933 10 C 0.047 3.953 11 O -0.382 6.382 12 C 0.091 3.909 13 H 0.080 0.920 14 C 0.173 3.827 15 H 0.062 0.938 16 C -0.147 4.147 17 N -0.727 5.727 18 C -0.235 4.235 19 H 0.076 0.924 20 C -0.073 4.073 21 N -0.967 5.967 22 Si 0.967 3.033 23 H -0.290 1.290 24 H -0.299 1.299 25 H -0.270 1.270 26 C 0.096 3.904 27 C -0.100 4.100 28 C -0.126 4.126 29 C -0.109 4.109 30 H 0.102 0.898 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.409 0.591 34 H 0.058 0.942 35 H 0.116 0.884 36 H 0.074 0.926 37 H 0.124 0.876 38 H 0.038 0.962 39 H 0.067 0.933 40 H 0.044 0.956 41 H 0.376 0.624 42 H 0.248 0.752 43 H 0.087 0.913 44 H 0.061 0.939 45 H 0.101 0.899 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.100 0.900 49 H 0.092 0.908 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.487 9.450 -19.877 22.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.376 5.376 3 C 0.330 3.670 4 O -0.427 6.427 5 C -0.148 4.148 6 C 0.322 3.678 7 O -0.438 6.438 8 N -0.336 5.336 9 C -0.055 4.055 10 C -0.030 4.030 11 O -0.300 6.300 12 C 0.032 3.968 13 H 0.098 0.902 14 C 0.064 3.936 15 H 0.080 0.920 16 C -0.207 4.207 17 N -0.367 5.367 18 C -0.367 4.367 19 H 0.094 0.906 20 C -0.265 4.265 21 N -0.618 5.618 22 Si 0.797 3.203 23 H -0.218 1.218 24 H -0.226 1.226 25 H -0.195 1.195 26 C -0.027 4.027 27 C -0.138 4.138 28 C -0.163 4.163 29 C -0.147 4.147 30 H 0.120 0.880 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.244 0.756 34 H 0.076 0.924 35 H 0.134 0.866 36 H 0.092 0.908 37 H 0.142 0.858 38 H 0.057 0.943 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.208 0.792 42 H 0.057 0.943 43 H 0.105 0.895 44 H 0.079 0.921 45 H 0.120 0.880 46 H 0.102 0.898 47 H 0.103 0.897 48 H 0.119 0.881 49 H 0.110 0.890 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.385 9.562 -19.724 22.571 hybrid contribution -0.661 -1.433 0.811 1.774 sum 4.724 8.129 -18.913 21.121 Atomic orbital electron populations 1.21719 0.77892 1.04232 1.02015 1.45834 1.08944 1.08593 1.74226 1.19581 0.87938 0.83982 0.75501 1.90693 1.69781 1.31841 1.50397 1.22481 0.93526 1.02514 0.96245 1.20364 0.80005 0.83739 0.83708 1.90690 1.37820 1.29448 1.85891 1.48231 1.54682 1.24716 1.05939 1.22727 0.95204 0.85357 1.02252 1.23130 1.01039 0.93271 0.85531 1.88077 1.69083 1.38824 1.34050 1.22655 0.92869 0.86302 0.95005 0.90228 1.20510 0.88597 0.93549 0.90910 0.92016 1.22148 1.00129 0.99357 0.99084 1.42527 1.03161 1.32599 1.58459 1.19627 0.92525 1.03700 1.20840 0.90594 1.25449 0.95212 1.02582 1.03281 1.69836 0.96826 1.43991 1.51172 0.85235 0.76728 0.79700 0.78679 1.21762 1.22551 1.19468 1.22132 1.01251 0.94476 0.84861 1.22894 1.01277 0.98590 0.91011 1.22838 1.04019 0.94275 0.95170 1.22977 1.01262 0.91985 0.98473 0.87976 0.93306 0.91347 0.75645 0.92388 0.86593 0.90773 0.85771 0.94326 0.91378 0.93682 0.79174 0.94328 0.89496 0.92102 0.88021 0.89844 0.89726 0.88141 0.89004 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.52 10.71 127.77 1.37 2.89 16 2 N -0.73 -15.22 5.61 -484.52 -2.72 -17.94 16 3 C 0.54 12.77 5.22 87.66 0.46 13.23 16 4 O -0.55 -15.00 15.23 -3.04 -0.05 -15.04 16 5 C -0.14 -3.01 0.56 -53.14 -0.03 -3.04 16 6 C 0.53 14.88 6.54 87.66 0.57 15.45 16 7 O -0.56 -18.72 15.52 -3.04 -0.05 -18.77 16 8 N -0.60 -17.69 3.02 -817.17 -2.47 -20.16 16 9 C 0.07 1.74 5.72 86.35 0.49 2.23 16 10 C 0.05 1.14 6.99 72.08 0.50 1.65 16 11 O -0.38 -12.69 9.24 -148.98 -1.38 -14.07 16 12 C 0.09 3.02 2.57 30.69 0.08 3.10 16 13 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 14 C 0.17 6.78 2.81 44.99 0.13 6.91 16 15 H 0.06 2.39 8.08 -2.39 -0.02 2.37 16 16 C -0.15 -5.28 9.29 71.98 0.67 -4.61 16 17 N -0.73 -36.25 4.24 -322.94 -1.37 -37.62 16 18 C -0.24 -12.91 9.93 84.03 0.83 -12.08 16 19 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 20 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 21 N -0.97 -59.35 13.06 21.65 0.28 -59.07 16 22 Si 0.97 46.39 29.55 68.60 2.03 48.42 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 24 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 26 C 0.10 3.38 5.84 86.34 0.50 3.89 16 27 C -0.10 -1.69 6.93 31.18 0.22 -1.48 16 28 C -0.13 -1.74 7.80 31.18 0.24 -1.49 16 29 C -0.11 -1.83 5.77 31.12 0.18 -1.65 16 30 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.41 7.93 8.74 -92.71 -0.81 7.12 16 34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.12 2.60 3.49 -2.39 -0.01 2.60 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 40 H 0.04 1.71 7.56 -2.39 -0.02 1.69 16 41 H 0.38 20.63 7.07 -92.71 -0.66 19.97 16 42 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 43 H 0.09 3.21 7.07 -2.39 -0.02 3.19 16 44 H 0.06 2.64 6.93 -2.39 -0.02 2.62 16 45 H 0.10 1.84 7.61 -2.39 -0.02 1.82 16 46 H 0.08 1.28 8.09 -2.39 -0.02 1.26 16 47 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 49 H 0.09 1.59 6.42 -2.39 -0.02 1.57 16 50 H 0.10 1.54 8.09 -2.39 -0.02 1.52 16 Total: -1.00 -71.15 393.82 0.46 -70.68 By element: Atomic # 1 Polarization: 42.80 SS G_CDS: -0.50 Total: 42.29 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: 6.69 Total: 21.28 kcal Atomic # 7 Polarization: -128.52 SS G_CDS: -6.28 Total: -134.79 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: -1.47 Total: -47.88 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -71.15 0.46 -70.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276812730.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.801 kcal (2) G-P(sol) polarization free energy of solvation -71.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds