Wall clock time and date at job start Tue Mar 31 2020 23:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00128 * 2 1 4 4 H 1.08999 * 110.54780 * 1.42947 * 3 2 1 5 5 O 1.44378 * 110.61960 * 238.54388 * 3 2 1 6 6 C 1.43742 * 106.97766 * 201.43814 * 5 3 2 7 7 C 1.54102 * 107.29290 * 26.51587 * 6 5 3 8 8 C 1.54811 * 104.30379 * 357.90031 * 7 6 5 9 9 H 1.09000 * 110.90707 * 97.38660 * 8 7 6 10 10 C 1.50703 * 110.90918 * 220.98857 * 8 7 6 11 11 O 1.21279 * 120.00114 * 118.55033 * 10 8 7 12 12 N 1.34780 * 119.99636 * 298.54454 * 10 8 7 13 13 C 1.46496 * 120.00178 * 0.02562 * 12 10 8 14 14 C 1.46502 * 119.99631 * 179.97438 * 12 10 8 15 15 C 1.53002 * 109.47421 * 263.68868 * 14 12 10 16 16 H 1.08997 * 109.46711 * 296.74727 * 15 14 12 17 17 C 1.53001 * 109.46766 * 176.75104 * 15 14 12 18 18 N 1.46899 * 109.46724 * 56.75104 * 15 14 12 19 19 C 1.46903 * 110.99520 * 198.73676 * 18 15 14 20 20 C 1.50699 * 109.46925 * 180.02562 * 19 18 15 21 21 O 1.21293 * 120.00227 * 359.97438 * 20 19 18 22 22 N 1.34787 * 119.99875 * 179.97438 * 20 19 18 23 23 C 1.37098 * 119.99542 * 179.97438 * 22 20 19 24 24 H 1.07992 * 120.00128 * 0.02562 * 23 22 20 25 25 C 1.38953 * 119.99191 * 180.02562 * 23 22 20 26 26 N 1.31411 * 120.00524 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99587 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.47236 * 59.99879 * 27 25 23 29 29 H 1.48500 * 109.47289 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.46978 * 299.99898 * 27 25 23 31 31 H 1.08002 * 120.00198 * 359.97438 * 1 2 3 32 32 H 1.08004 * 120.00230 * 180.02562 * 1 2 3 33 33 H 1.08001 * 119.99711 * 180.02562 * 2 1 3 34 34 H 1.08998 * 109.87971 * 267.09354 * 6 5 3 35 35 H 1.08993 * 109.87847 * 145.93881 * 6 5 3 36 36 H 1.08997 * 110.48956 * 116.64659 * 7 6 5 37 37 H 1.09002 * 110.48711 * 239.16605 * 7 6 5 38 38 H 1.09004 * 109.47149 * 85.01702 * 13 12 10 39 39 H 1.09000 * 109.47016 * 205.01226 * 13 12 10 40 40 H 1.08994 * 109.47449 * 325.01266 * 13 12 10 41 41 H 1.08994 * 109.47171 * 23.69195 * 14 12 10 42 42 H 1.08999 * 109.46744 * 143.68920 * 14 12 10 43 43 H 1.09004 * 109.46708 * 180.02562 * 17 15 14 44 44 H 1.08993 * 109.47065 * 300.00069 * 17 15 14 45 45 H 1.08994 * 109.47419 * 60.00081 * 17 15 14 46 46 H 1.00893 * 111.00449 * 322.68487 * 18 15 14 47 47 H 1.09007 * 109.46950 * 299.99641 * 19 18 15 48 48 H 1.08996 * 109.47382 * 59.99773 * 19 18 15 49 49 H 0.96996 * 119.99741 * 359.97438 * 22 20 19 50 50 H 0.96994 * 120.00236 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3712 2.1466 0.0255 5 8 2.9284 1.3928 -1.1527 6 6 3.9463 2.3588 -0.8412 7 6 4.1082 2.3756 0.6912 8 6 3.0473 1.3690 1.1990 9 1 3.4953 0.3932 1.3866 10 6 2.3600 1.8897 2.4350 11 8 1.1641 2.0909 2.4247 12 7 3.0745 2.1316 3.5520 13 6 4.5191 1.8890 3.5643 14 6 2.4065 2.6383 4.7534 15 6 2.5435 4.1611 4.8093 16 1 3.5965 4.4281 4.8982 17 6 1.7773 4.6979 6.0200 18 7 1.9915 4.7478 3.5809 19 6 2.4853 6.1172 3.3836 20 6 1.8984 6.6852 2.1171 21 8 1.1435 6.0150 1.4447 22 7 2.2125 7.9379 1.7314 23 6 1.6790 8.4544 0.5790 24 1 1.0068 7.8576 -0.0196 25 6 2.0033 9.7457 0.1812 26 7 2.8216 10.4716 0.9094 27 14 1.2758 10.4497 -1.3887 28 1 -0.2054 10.4680 -1.2832 29 1 1.7755 11.8338 -1.5886 30 1 1.6795 9.6068 -2.5427 31 1 -0.5400 0.9353 0.0004 32 1 -0.5401 -0.9353 0.0004 33 1 1.8499 -0.9353 -0.0004 34 1 3.6417 3.3446 -1.1925 35 1 4.8869 2.0703 -1.3101 36 1 5.1093 2.0493 0.9727 37 1 3.9078 3.3721 1.0851 38 1 5.0377 2.7626 3.1694 39 1 4.8476 1.7031 4.5869 40 1 4.7471 1.0208 2.9460 41 1 1.3506 2.3694 4.7227 42 1 2.8677 2.1992 5.6380 43 1 1.8746 5.7829 6.0596 44 1 0.7244 4.4309 5.9312 45 1 2.1869 4.2626 6.9314 46 1 2.1978 4.1702 2.7798 47 1 2.1885 6.7360 4.2305 48 1 3.5725 6.1039 3.3066 49 1 2.8160 8.4740 2.2694 50 1 3.0476 11.3731 0.6319 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277938358.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:32 Heat of formation + Delta-G solvation = -85.014269 kcal Electronic energy + Delta-G solvation = -31423.820641 eV Core-core repulsion = 27259.057454 eV Total energy + Delta-G solvation = -4164.763186 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.79492 -38.95332 -38.16231 -36.67783 -35.05707 -33.85002 -33.82561 -32.46795 -31.24421 -30.71977 -28.65852 -27.64209 -26.43610 -26.07207 -24.02017 -23.18930 -22.16649 -20.45151 -20.09422 -19.45028 -19.07977 -17.85303 -17.41493 -16.61753 -16.49143 -16.08530 -15.90996 -15.39766 -15.18386 -14.96985 -14.51618 -14.38024 -13.88970 -13.76891 -13.68697 -13.56444 -13.36266 -13.19250 -12.94136 -12.60257 -12.51183 -12.40517 -11.99991 -11.91332 -11.83254 -11.64942 -11.54151 -11.44773 -11.36567 -11.10683 -11.05094 -10.95842 -10.82657 -10.41553 -10.17953 -9.81295 -9.69164 -9.46082 -9.42259 -8.81603 -8.36270 -7.97328 -7.90749 -6.38365 -3.78810 2.16328 2.56421 2.79512 3.22762 3.27784 3.32916 3.89451 3.95258 4.11957 4.25130 4.37311 4.44837 4.56456 4.73373 4.85641 4.87591 5.00168 5.06490 5.09624 5.15315 5.21975 5.23602 5.27380 5.31333 5.32452 5.38965 5.43256 5.62126 5.70621 5.73123 5.77875 5.81584 5.82159 5.86198 5.95525 6.02314 6.05126 6.22879 6.33417 6.43513 6.55757 6.70608 6.87071 7.17969 7.34224 7.58403 7.77717 8.10212 8.12712 8.65886 9.21909 9.58292 10.10799 10.79488 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009552 B = 0.003765 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.593315 B = 7435.700748 C = 9155.476941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.157 4.157 3 C 0.124 3.876 4 H 0.093 0.907 5 O -0.369 6.369 6 C 0.048 3.952 7 C -0.147 4.147 8 C -0.134 4.134 9 H 0.109 0.891 10 C 0.520 3.480 11 O -0.500 6.500 12 N -0.623 5.623 13 C 0.077 3.923 14 C 0.114 3.886 15 C 0.067 3.933 16 H 0.037 0.963 17 C -0.139 4.139 18 N -0.655 5.655 19 C 0.049 3.951 20 C 0.440 3.560 21 O -0.576 6.576 22 N -0.565 5.565 23 C -0.297 4.297 24 H 0.102 0.898 25 C 0.022 3.978 26 N -0.904 5.904 27 Si 0.929 3.071 28 H -0.273 1.273 29 H -0.285 1.285 30 H -0.274 1.274 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.349 0.651 47 H 0.085 0.915 48 H 0.037 0.963 49 H 0.391 0.609 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.480 -19.208 7.565 21.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.175 4.175 3 C 0.067 3.933 4 H 0.111 0.889 5 O -0.288 6.288 6 C -0.029 4.029 7 C -0.184 4.184 8 C -0.156 4.156 9 H 0.127 0.873 10 C 0.307 3.693 11 O -0.372 6.372 12 N -0.359 5.359 13 C -0.067 4.067 14 C -0.008 4.008 15 C -0.044 4.044 16 H 0.055 0.945 17 C -0.198 4.198 18 N -0.291 5.291 19 C -0.083 4.083 20 C 0.225 3.775 21 O -0.459 6.459 22 N -0.202 5.202 23 C -0.427 4.427 24 H 0.120 0.880 25 C -0.179 4.179 26 N -0.545 5.545 27 Si 0.756 3.244 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.171 0.829 47 H 0.103 0.897 48 H 0.055 0.945 49 H 0.224 0.776 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.774 -19.283 7.148 21.360 hybrid contribution 1.331 0.882 -0.349 1.634 sum 7.105 -18.401 6.799 20.864 Atomic orbital electron populations 1.23953 0.95809 1.02383 0.96916 1.22523 0.95749 0.96565 1.02672 1.22077 0.91307 0.97387 0.82530 0.88899 1.88903 1.41187 1.61521 1.37237 1.23149 0.92090 0.93739 0.93955 1.23022 0.98812 0.99930 0.96682 1.22879 0.97565 1.00825 0.94305 0.87283 1.20233 0.87451 0.77827 0.83827 1.90816 1.14120 1.49548 1.82737 1.47860 1.08623 1.66596 1.12800 1.21884 0.80403 1.01325 1.03053 1.21739 1.00143 0.92923 0.86030 1.21908 0.96380 0.93713 0.92447 0.94522 1.21751 1.01253 1.01357 0.95410 1.60106 1.61997 1.02157 1.04848 1.21733 0.96515 0.91503 0.98598 1.19842 0.86362 0.83496 0.87796 1.90556 1.39036 1.59951 1.56390 1.41854 1.42884 1.12171 1.23340 1.19650 1.25479 0.97567 1.00013 0.88039 1.25233 0.96987 0.96226 0.99438 1.69602 1.35068 1.10789 1.39083 0.85941 0.79340 0.77676 0.81414 1.19876 1.20995 1.19933 0.87713 0.88111 0.87205 0.91382 0.89540 0.89642 0.90009 0.92501 0.90818 0.91136 0.88450 0.90264 0.92262 0.91558 0.92782 0.82930 0.89656 0.94539 0.77583 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 14.33 29.01 0.42 -1.45 16 2 C -0.16 -1.96 9.24 -36.03 -0.33 -2.29 16 3 C 0.12 1.76 2.75 -26.70 -0.07 1.69 16 4 H 0.09 1.62 7.24 -51.93 -0.38 1.24 16 5 O -0.37 -5.34 11.21 -35.23 -0.39 -5.73 16 6 C 0.05 0.58 7.70 37.73 0.29 0.87 16 7 C -0.15 -1.59 4.97 -25.20 -0.13 -1.71 16 8 C -0.13 -1.56 2.00 -89.64 -0.18 -1.74 16 9 H 0.11 1.00 7.48 -51.93 -0.39 0.62 16 10 C 0.52 7.11 5.41 -10.98 -0.06 7.05 16 11 O -0.50 -8.92 14.61 5.56 0.08 -8.83 16 12 N -0.62 -6.78 2.52 -181.57 -0.46 -7.24 16 13 C 0.08 0.54 9.02 59.84 0.54 1.08 16 14 C 0.11 1.26 5.22 -4.04 -0.02 1.24 16 15 C 0.07 0.85 2.92 -67.71 -0.20 0.66 16 16 H 0.04 0.43 7.91 -51.93 -0.41 0.02 16 17 C -0.14 -1.61 9.34 37.16 0.35 -1.26 16 18 N -0.66 -11.58 5.91 -107.99 -0.64 -12.22 16 19 C 0.05 0.92 5.97 -4.97 -0.03 0.89 16 20 C 0.44 10.82 7.82 -10.98 -0.09 10.74 16 21 O -0.58 -16.40 15.78 5.55 0.09 -16.31 16 22 N -0.57 -14.67 5.29 -10.96 -0.06 -14.73 16 23 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 24 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 25 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 26 N -0.90 -24.87 13.05 55.50 0.72 -24.14 16 27 Si 0.93 21.47 29.55 -169.99 -5.02 16.44 16 28 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 29 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 30 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 31 H 0.10 1.42 7.87 -52.49 -0.41 1.01 16 32 H 0.10 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.65 7.39 -51.93 -0.38 0.26 16 37 H 0.08 1.07 7.85 -51.93 -0.41 0.66 16 38 H 0.06 0.41 7.62 -51.93 -0.40 0.02 16 39 H 0.07 0.38 7.91 -51.93 -0.41 -0.03 16 40 H 0.07 0.40 6.40 -51.93 -0.33 0.06 16 41 H 0.10 1.29 7.24 -51.93 -0.38 0.92 16 42 H 0.08 0.62 7.96 -51.93 -0.41 0.21 16 43 H 0.06 0.72 7.09 -51.93 -0.37 0.35 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.35 6.63 5.17 -39.30 -0.20 6.43 16 47 H 0.09 1.48 7.05 -51.92 -0.37 1.12 16 48 H 0.04 0.62 8.07 -51.93 -0.42 0.20 16 49 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 50 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 403.41 15.07 6.08 6.08 Total: -1.00 -34.89 403.41 -7.39 -42.27 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -8.03 Total: 16.75 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 0.25 Total: 7.66 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -0.43 Total: -58.33 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.23 Total: -30.88 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.89 -7.39 -42.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277938358.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.741 kcal (2) G-P(sol) polarization free energy of solvation -34.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds