Wall clock time and date at job start Tue Mar 31 2020 22:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46969 * 2 1 4 4 C 1.50697 * 109.47147 * 240.00064 * 2 1 3 5 5 O 1.21280 * 119.99963 * 263.86733 * 4 2 1 6 6 N 1.34778 * 120.00049 * 83.86800 * 4 2 1 7 7 C 1.47144 * 120.98243 * 4.92028 * 6 4 2 8 8 C 1.53296 * 108.38285 * 230.50989 * 7 6 4 9 9 O 1.42959 * 109.22130 * 307.69703 * 8 7 6 10 10 C 1.42958 * 114.16580 * 62.58527 * 9 8 7 11 11 H 1.08999 * 109.51405 * 57.33926 * 10 9 8 12 12 C 1.52997 * 109.51034 * 177.44133 * 10 9 8 13 13 N 1.46902 * 109.47276 * 299.99583 * 12 10 9 14 14 C 1.46900 * 111.00073 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.47378 * 180.02562 * 14 13 12 16 16 O 1.21294 * 119.99479 * 359.97438 * 15 14 13 17 17 N 1.34767 * 120.00458 * 180.02562 * 15 14 13 18 18 C 1.37094 * 120.00488 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99637 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00616 * 179.97438 * 18 17 15 21 21 N 1.31406 * 120.00055 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99641 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47045 * 89.99997 * 22 20 18 24 24 H 1.48505 * 109.46828 * 210.00085 * 22 20 18 25 25 H 1.48503 * 109.47017 * 330.00013 * 22 20 18 26 26 C 1.47154 * 120.97857 * 184.63621 * 6 4 2 27 27 C 1.53000 * 109.47497 * 119.99421 * 2 1 3 28 28 C 1.52991 * 117.50317 * 179.97438 * 27 2 1 29 29 C 1.52992 * 60.03187 * 107.48332 * 28 27 2 30 30 H 1.09005 * 109.47021 * 298.91822 * 1 2 3 31 31 H 1.08996 * 109.47232 * 58.91436 * 1 2 3 32 32 H 1.09002 * 109.47085 * 178.91789 * 1 2 3 33 33 H 1.09002 * 109.68356 * 350.23295 * 7 6 4 34 34 H 1.09004 * 109.68445 * 110.78615 * 7 6 4 35 35 H 1.09001 * 109.50852 * 67.62664 * 8 7 6 36 36 H 1.09001 * 109.50990 * 187.71984 * 8 7 6 37 37 H 1.08998 * 109.47819 * 60.00054 * 12 10 9 38 38 H 1.09008 * 109.47106 * 179.97438 * 12 10 9 39 39 H 1.00903 * 110.99677 * 56.04935 * 13 12 10 40 40 H 1.09001 * 109.47112 * 299.99764 * 14 13 12 41 41 H 1.08994 * 109.47107 * 59.99983 * 14 13 12 42 42 H 0.97001 * 120.00124 * 359.97438 * 17 15 14 43 43 H 0.97010 * 119.99622 * 180.02562 * 21 20 18 44 44 H 1.09005 * 109.67796 * 249.21292 * 26 6 4 45 45 H 1.08998 * 109.68203 * 9.76345 * 26 6 4 46 46 H 1.09001 * 115.55464 * 34.31544 * 27 2 1 47 47 H 1.09006 * 117.50285 * 214.98813 * 28 27 2 48 48 H 1.09004 * 117.49826 * 359.97438 * 28 27 2 49 49 H 1.09012 * 117.50063 * 107.50214 * 29 28 27 50 50 H 1.08999 * 117.50313 * 252.52401 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.3402 -1.8819 -1.1710 6 7 2.1394 -0.0438 -2.3969 7 6 1.8749 1.4018 -2.4703 8 6 0.8924 1.6558 -3.6193 9 8 1.3908 1.0404 -4.8095 10 6 1.5107 -0.3817 -4.7268 11 1 0.5415 -0.8151 -4.4801 12 6 1.9897 -0.9331 -6.0712 13 7 1.0193 -0.5840 -7.1174 14 6 1.4470 -1.0989 -8.4251 15 6 0.4295 -0.7216 -9.4708 16 8 -0.5553 -0.0867 -9.1573 17 7 0.6132 -1.0905 -10.7539 18 6 -0.3121 -0.7469 -11.7053 19 1 -1.1886 -0.1808 -11.4263 20 6 -0.1224 -1.1268 -13.0283 21 7 -1.0097 -0.7977 -13.9400 22 14 1.3939 -2.1052 -13.5108 23 1 1.1036 -3.5569 -13.3955 24 1 1.7647 -1.7843 -14.9126 25 1 2.5188 -1.7521 -12.6080 26 6 2.5303 -0.7391 -3.6335 27 6 2.0401 -0.7211 1.2493 28 6 3.5550 -0.8284 1.4340 29 6 2.7432 0.1231 2.3151 30 1 -0.3633 0.4970 0.8996 31 1 -0.3633 0.5306 -0.8800 32 1 -0.3633 -1.0275 -0.0194 33 1 1.4383 1.7433 -1.5317 34 1 2.8060 1.9364 -2.6585 35 1 -0.0791 1.2299 -3.3684 36 1 0.7890 2.7291 -3.7793 37 1 2.9597 -0.5008 -6.3165 38 1 2.0813 -2.0175 -6.0074 39 1 0.8687 0.4131 -7.1527 40 1 2.4134 -0.6679 -8.6869 41 1 1.5341 -2.1843 -8.3774 42 1 1.4006 -1.5986 -11.0045 43 1 -0.8774 -1.0633 -14.8636 44 1 3.5264 -0.4164 -3.9369 45 1 2.5280 -1.8160 -3.4656 46 1 1.4311 -1.5582 1.5906 47 1 3.9426 -1.7359 1.8971 48 1 4.1884 -0.3857 0.6653 49 1 2.5965 -0.1583 3.3580 50 1 2.8421 1.1920 2.1259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280568223.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:21 Heat of formation + Delta-G solvation = -78.812536 kcal Electronic energy + Delta-G solvation = -29485.039876 eV Core-core repulsion = 25320.545617 eV Total energy + Delta-G solvation = -4164.494259 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.95561 -39.16600 -38.37950 -37.38522 -35.73951 -34.93328 -33.89151 -33.00153 -31.83463 -31.57103 -28.85514 -27.48695 -25.55317 -24.67028 -23.77638 -23.11286 -22.74099 -21.77700 -21.04248 -19.35501 -19.15586 -18.33998 -17.79311 -16.98089 -16.62408 -16.26964 -15.79636 -15.70354 -15.44765 -15.16433 -14.97704 -14.85549 -14.75764 -14.21482 -14.03998 -13.75262 -13.48434 -13.22154 -13.08597 -12.93282 -12.65915 -12.55114 -12.27259 -12.18032 -11.96662 -11.92611 -11.84242 -11.68841 -11.51657 -11.42983 -11.13769 -10.96624 -10.81232 -10.59784 -10.57512 -10.37133 -9.95422 -9.86352 -9.54712 -8.90567 -8.55470 -8.16827 -8.10923 -6.28797 -3.80031 2.25961 2.42657 3.04422 3.08908 3.16730 3.35943 3.43863 3.77460 3.99169 4.03160 4.11795 4.12857 4.39185 4.42117 4.46820 4.61198 4.68254 4.71373 4.74031 4.80996 4.85380 4.95452 5.01780 5.05723 5.21187 5.22313 5.24509 5.25390 5.28562 5.36909 5.38801 5.46282 5.51497 5.59374 5.61877 5.68234 5.69871 5.77875 5.81810 5.84132 5.96615 5.98763 6.88414 6.94885 7.10550 7.60542 7.65910 7.80186 8.17258 8.62626 8.97634 9.45128 9.85946 10.84383 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031575 B = 0.001774 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.558172 B =15780.416338 C =16188.947027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.080 4.080 3 H 0.092 0.908 4 C 0.522 3.478 5 O -0.529 6.529 6 N -0.617 5.617 7 C 0.068 3.932 8 C 0.050 3.950 9 O -0.370 6.370 10 C 0.082 3.918 11 H 0.075 0.925 12 C 0.070 3.930 13 N -0.666 5.666 14 C 0.048 3.952 15 C 0.451 3.549 16 O -0.563 6.563 17 N -0.591 5.591 18 C -0.305 4.305 19 H 0.119 0.881 20 C 0.041 3.959 21 N -0.882 5.882 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.085 3.915 27 C -0.134 4.134 28 C -0.168 4.168 29 C -0.179 4.179 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.108 0.892 37 H 0.037 0.963 38 H 0.087 0.913 39 H 0.360 0.640 40 H 0.045 0.955 41 H 0.087 0.913 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.075 0.925 45 H 0.102 0.898 46 H 0.110 0.890 47 H 0.096 0.904 48 H 0.089 0.911 49 H 0.096 0.904 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.684 3.344 31.014 32.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.102 4.102 3 H 0.110 0.890 4 C 0.311 3.689 5 O -0.405 6.405 6 N -0.352 5.352 7 C -0.055 4.055 8 C -0.028 4.028 9 O -0.289 6.289 10 C 0.023 3.977 11 H 0.093 0.907 12 C -0.061 4.061 13 N -0.299 5.299 14 C -0.085 4.085 15 C 0.237 3.763 16 O -0.445 6.445 17 N -0.231 5.231 18 C -0.433 4.433 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.522 5.522 22 Si 0.707 3.293 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.038 4.038 27 C -0.153 4.153 28 C -0.205 4.205 29 C -0.216 4.216 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.126 0.874 37 H 0.055 0.945 38 H 0.105 0.895 39 H 0.180 0.820 40 H 0.063 0.937 41 H 0.105 0.895 42 H 0.203 0.797 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.120 0.880 46 H 0.129 0.871 47 H 0.114 0.886 48 H 0.108 0.892 49 H 0.115 0.885 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.739 2.705 30.991 32.598 hybrid contribution 1.899 -0.233 -0.638 2.017 sum 11.638 2.472 30.353 32.601 Atomic orbital electron populations 1.21731 0.91862 1.03349 1.02856 1.20939 0.98008 0.99641 0.91567 0.88958 1.20662 0.77184 0.87185 0.83919 1.90699 1.48805 1.16388 1.84595 1.48160 1.69326 1.09143 1.08531 1.22578 1.00930 0.81048 1.00915 1.22935 0.95664 0.99436 0.84766 1.87983 1.85877 1.19615 1.35387 1.22630 0.98574 0.81795 0.94687 0.90688 1.21904 0.93978 1.00482 0.89698 1.60031 1.44892 1.21892 1.03106 1.21712 0.96294 1.01044 0.89482 1.19700 0.88637 0.85119 0.82890 1.90568 1.30885 1.42729 1.80319 1.42198 1.22579 1.50909 1.07416 1.19437 1.03520 1.33584 0.86792 0.86293 1.25034 0.97726 0.97900 0.95518 1.69625 1.34700 1.45694 1.02200 0.86666 0.82732 0.80921 0.79026 1.19613 1.20219 1.19528 1.22368 0.98386 0.99611 0.83479 1.21998 0.95816 1.01688 0.95767 1.22849 0.93606 1.01528 1.02526 1.23094 1.04598 0.97457 0.96432 0.90910 0.91922 0.91606 0.88651 0.90335 0.92353 0.87427 0.94473 0.89478 0.81976 0.93702 0.89468 0.79697 0.91652 0.90650 0.87961 0.87142 0.88596 0.89249 0.88545 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.02 37.16 0.34 -0.47 16 2 C -0.08 -0.54 2.04 -91.77 -0.19 -0.73 16 3 H 0.09 0.46 6.17 -51.93 -0.32 0.14 16 4 C 0.52 5.18 6.53 -10.99 -0.07 5.10 16 5 O -0.53 -7.18 15.50 5.56 0.09 -7.10 16 6 N -0.62 -5.47 3.01 -172.02 -0.52 -5.99 16 7 C 0.07 0.43 6.39 -3.54 -0.02 0.41 16 8 C 0.05 0.38 6.98 37.31 0.26 0.64 16 9 O -0.37 -4.18 9.72 -35.23 -0.34 -4.53 16 10 C 0.08 0.90 3.06 -26.36 -0.08 0.82 16 11 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 12 C 0.07 0.82 5.43 -3.82 -0.02 0.80 16 13 N -0.67 -10.68 6.13 -115.06 -0.70 -11.38 16 14 C 0.05 0.80 6.17 -4.98 -0.03 0.77 16 15 C 0.45 10.43 7.82 -10.99 -0.09 10.35 16 16 O -0.56 -15.43 15.78 5.54 0.09 -15.35 16 17 N -0.59 -14.29 5.09 -10.97 -0.06 -14.34 16 18 C -0.30 -8.73 10.16 -14.93 -0.15 -8.88 16 19 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 21 N -0.88 -25.97 13.96 55.50 0.77 -25.19 16 22 Si 0.88 19.53 27.74 -169.99 -4.71 14.82 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 26 C 0.08 0.82 5.94 -3.32 -0.02 0.80 16 27 C -0.13 -0.96 4.60 -90.59 -0.42 -1.38 16 28 C -0.17 -1.24 9.62 -26.74 -0.26 -1.50 16 29 C -0.18 -0.98 10.18 -26.70 -0.27 -1.25 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.33 7.72 -51.93 -0.40 -0.07 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.10 0.38 5.19 -51.93 -0.27 0.11 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 39 H 0.36 6.25 7.82 -39.29 -0.31 5.94 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 42 H 0.37 7.83 5.76 -40.82 -0.24 7.60 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.10 1.08 7.12 -51.93 -0.37 0.71 16 46 H 0.11 0.84 8.11 -51.93 -0.42 0.42 16 47 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.10 0.45 8.14 -51.92 -0.42 0.03 16 50 H 0.09 0.42 8.05 -51.93 -0.42 0.00 16 LS Contribution 402.73 15.07 6.07 6.07 Total: -1.00 -35.56 402.73 -8.65 -44.22 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -8.22 Total: 12.25 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -1.12 Total: 6.53 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.50 Total: -56.91 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.17 Total: -26.97 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.71 Total: 14.82 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.56 -8.65 -44.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280568223.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.596 kcal (2) G-P(sol) polarization free energy of solvation -35.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds