Wall clock time and date at job start Tue Mar 31 2020 22:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47541 * 2 1 4 4 C 1.50707 * 109.46962 * 119.99814 * 2 1 3 5 5 O 1.21281 * 119.99615 * 97.86763 * 4 2 1 6 6 N 1.34769 * 120.00016 * 277.86652 * 4 2 1 7 7 C 1.47152 * 120.98253 * 175.19617 * 6 4 2 8 8 C 1.53291 * 108.38718 * 129.49007 * 7 6 4 9 9 O 1.42958 * 109.22481 * 52.29901 * 8 7 6 10 10 C 1.42959 * 114.16769 * 297.42180 * 9 8 7 11 11 H 1.08998 * 109.51535 * 302.65240 * 10 9 8 12 12 C 1.52999 * 109.51276 * 182.55077 * 10 9 8 13 13 N 1.46910 * 109.47111 * 65.10459 * 12 10 9 14 14 C 1.46895 * 111.00157 * 179.97438 * 13 12 10 15 15 C 1.50692 * 109.47093 * 180.02562 * 14 13 12 16 16 O 1.21298 * 120.00287 * 359.97438 * 15 14 13 17 17 N 1.34782 * 120.00005 * 180.02562 * 15 14 13 18 18 C 1.37100 * 119.99787 * 179.97438 * 17 15 14 19 19 H 1.08003 * 119.99993 * 0.02562 * 18 17 15 20 20 C 1.38950 * 119.99878 * 179.97438 * 18 17 15 21 21 N 1.31404 * 119.99925 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99889 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47022 * 60.00563 * 22 20 18 24 24 H 1.48502 * 109.46922 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47234 * 300.00394 * 22 20 18 26 26 C 1.47269 * 120.96150 * 355.21997 * 6 4 2 27 27 C 1.53000 * 109.47334 * 239.99887 * 2 1 3 28 28 C 1.52992 * 117.50241 * 128.74893 * 27 2 1 29 29 C 1.52991 * 117.50009 * 60.08462 * 27 2 1 30 30 H 1.09001 * 109.47486 * 175.89125 * 1 2 3 31 31 H 1.09002 * 109.47326 * 295.89812 * 1 2 3 32 32 H 1.09000 * 109.47179 * 55.89588 * 1 2 3 33 33 H 1.09005 * 109.68302 * 9.76070 * 7 6 4 34 34 H 1.09007 * 109.71381 * 249.22960 * 7 6 4 35 35 H 1.09008 * 109.50943 * 292.37549 * 8 7 6 36 36 H 1.09002 * 109.51544 * 172.22622 * 8 7 6 37 37 H 1.09007 * 109.47246 * 185.10038 * 12 10 9 38 38 H 1.08997 * 109.47641 * 305.10605 * 12 10 9 39 39 H 1.00896 * 110.99684 * 56.04259 * 13 12 10 40 40 H 1.09002 * 109.47243 * 300.00216 * 14 13 12 41 41 H 1.09003 * 109.47247 * 59.99599 * 14 13 12 42 42 H 0.96999 * 119.99852 * 359.97438 * 17 15 14 43 43 H 0.97005 * 120.00317 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.67422 * 110.80075 * 26 6 4 45 45 H 1.08999 * 109.73935 * 350.20890 * 26 6 4 46 46 H 1.09008 * 115.54643 * 274.42204 * 27 2 1 47 47 H 1.09004 * 117.49641 * 0.02562 * 28 27 2 48 48 H 1.09003 * 117.50049 * 145.02133 * 28 27 2 49 49 H 1.08994 * 117.50431 * 214.98075 * 29 27 2 50 50 H 1.09003 * 117.49629 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 8 2.3699 -1.8734 1.1639 6 7 2.1062 -0.0534 2.4049 7 6 2.4931 -0.7522 3.6408 8 6 3.6114 0.0476 4.3187 9 8 3.1968 1.4082 4.4619 10 6 2.9541 2.0796 3.2233 11 1 3.8527 2.0436 2.6074 12 6 2.5804 3.5378 3.4970 13 7 3.7279 4.2335 4.0949 14 6 3.4053 5.6396 4.3715 15 6 4.6037 6.3192 4.9821 16 8 5.6260 5.6936 5.1689 17 7 4.5394 7.6220 5.3215 18 6 5.6296 8.2401 5.8775 19 1 6.5400 7.6831 6.0431 20 6 5.5635 9.5833 6.2270 21 7 4.4559 10.2609 6.0251 22 14 7.0491 10.4256 6.9839 23 1 8.1922 10.3568 6.0384 24 1 6.7228 11.8470 7.2641 25 1 7.4132 9.7426 8.2513 26 6 1.8017 1.3850 2.4888 27 6 2.0400 -0.7213 -1.2492 28 6 3.0763 0.0038 -2.1100 29 6 1.6374 -0.1485 -2.6095 30 1 -0.3634 -1.0250 -0.0736 31 1 -0.3634 0.4489 0.9245 32 1 -0.3633 0.5762 -0.8509 33 1 2.8517 -1.7530 3.3998 34 1 1.6343 -0.8209 4.3086 35 1 4.5125 0.0041 3.7067 36 1 3.8174 -0.3756 5.3018 37 1 2.3077 4.0249 2.5608 38 1 1.7355 3.5734 4.1847 39 1 4.5431 4.1591 3.5050 40 1 3.1385 6.1410 3.4411 41 1 2.5659 5.6902 5.0650 42 1 3.7218 8.1222 5.1725 43 1 4.4096 11.1986 6.2694 44 1 0.8731 1.5319 3.0405 45 1 1.7029 1.7995 1.4856 46 1 2.1252 -1.8047 -1.1646 47 1 3.3951 0.9946 -1.7861 48 1 3.8431 -0.6026 -2.5921 49 1 1.4582 -0.8548 -3.4200 50 1 1.0088 0.7420 -2.6145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280568224.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:23 Heat of formation + Delta-G solvation = -110.260143 kcal Electronic energy + Delta-G solvation = -29532.514603 eV Core-core repulsion = 25366.656673 eV Total energy + Delta-G solvation = -4165.857930 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.66001 -40.17558 -39.74310 -38.18089 -36.77836 -35.89035 -35.78841 -33.47208 -33.23178 -32.54446 -29.73516 -28.41741 -26.63193 -26.13240 -24.98494 -24.00192 -23.15245 -22.45850 -21.52073 -21.03397 -19.93710 -19.87843 -18.61344 -17.96105 -17.71462 -17.43892 -16.78328 -16.49094 -16.34478 -16.14022 -16.08560 -15.82999 -15.66458 -15.29019 -15.01907 -14.81981 -14.63632 -14.47511 -14.25975 -13.85937 -13.51719 -13.27882 -13.22355 -13.12039 -13.07545 -12.99709 -12.81097 -12.64731 -12.41820 -12.32758 -12.22790 -12.11620 -11.83313 -11.65239 -11.48887 -11.31199 -11.14480 -10.95590 -10.69394 -10.32876 -9.99732 -9.64328 -9.23430 -8.45128 -5.93576 1.40757 1.42608 1.49263 1.53353 1.75909 2.08144 2.30447 2.74196 2.84363 2.92469 3.22348 3.37026 3.50014 3.60741 3.78292 3.85486 3.95008 3.98197 4.03974 4.14228 4.15569 4.19127 4.32921 4.38836 4.40799 4.45574 4.51442 4.55360 4.60368 4.62235 4.70677 4.74735 4.77648 4.80527 4.85969 4.90809 4.99703 5.03134 5.22842 5.26935 5.29824 5.35219 5.42181 5.89823 6.10874 6.22556 6.24214 6.45536 6.62630 7.02920 7.14647 7.58820 8.14827 8.71939 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018206 B = 0.001909 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.596999 B =14665.284990 C =15387.560739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.075 4.075 3 H 0.113 0.887 4 C 0.520 3.480 5 O -0.581 6.581 6 N -0.615 5.615 7 C 0.078 3.922 8 C 0.049 3.951 9 O -0.378 6.378 10 C 0.080 3.920 11 H 0.054 0.946 12 C 0.070 3.930 13 N -0.683 5.683 14 C 0.068 3.932 15 C 0.436 3.564 16 O -0.626 6.626 17 N -0.573 5.573 18 C -0.334 4.334 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.919 5.919 22 Si 0.992 3.008 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.274 1.274 26 C 0.082 3.918 27 C -0.158 4.158 28 C -0.187 4.187 29 C -0.157 4.157 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.118 0.882 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.341 0.659 40 H 0.074 0.926 41 H 0.105 0.895 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.099 0.901 45 H 0.123 0.877 46 H 0.091 0.909 47 H 0.102 0.898 48 H 0.090 0.910 49 H 0.100 0.900 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.464 -18.012 -15.228 27.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.096 4.096 3 H 0.131 0.869 4 C 0.311 3.689 5 O -0.461 6.461 6 N -0.348 5.348 7 C -0.044 4.044 8 C -0.028 4.028 9 O -0.297 6.297 10 C 0.021 3.979 11 H 0.072 0.928 12 C -0.059 4.059 13 N -0.316 5.316 14 C -0.064 4.064 15 C 0.223 3.777 16 O -0.512 6.512 17 N -0.211 5.211 18 C -0.464 4.464 19 H 0.095 0.905 20 C -0.213 4.213 21 N -0.560 5.560 22 Si 0.815 3.185 23 H -0.197 1.197 24 H -0.194 1.194 25 H -0.199 1.199 26 C -0.041 4.041 27 C -0.176 4.176 28 C -0.224 4.224 29 C -0.194 4.194 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.135 0.865 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.160 0.840 40 H 0.091 0.909 41 H 0.123 0.877 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.117 0.883 45 H 0.140 0.860 46 H 0.109 0.891 47 H 0.120 0.880 48 H 0.109 0.891 49 H 0.118 0.882 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.841 -18.953 -14.276 26.980 hybrid contribution 0.771 0.697 -0.459 1.136 sum -12.071 -18.256 -14.736 26.384 Atomic orbital electron populations 1.21719 0.90542 1.02923 1.04084 1.20931 0.98839 1.00053 0.89735 0.86897 1.21166 0.76296 0.86601 0.84886 1.90651 1.50692 1.19181 1.85563 1.48261 1.68089 1.10540 1.07877 1.22307 0.99194 0.97229 0.85701 1.22997 0.95205 0.82242 1.02384 1.88129 1.88057 1.24111 1.29362 1.22536 0.97124 0.92223 0.85981 0.92777 1.22035 0.93675 0.90415 0.99790 1.59916 1.06876 1.11895 1.52867 1.21522 0.95237 0.88821 1.00863 1.20990 0.90769 0.82283 0.83612 1.90500 1.34857 1.65439 1.60432 1.41925 1.14836 1.09102 1.55217 1.19610 0.94072 0.93960 1.38763 0.90516 1.26016 1.00980 0.96544 0.97729 1.69655 1.27595 1.10558 1.48187 0.85011 0.77663 0.77242 0.78549 1.19696 1.19416 1.19905 1.22651 0.98732 0.78802 1.03904 1.22044 1.05402 0.99018 0.91177 1.23144 0.93204 1.02094 1.03990 1.23060 0.97317 1.03518 0.95461 0.93038 0.91061 0.89016 0.89222 0.89459 0.93792 0.86459 0.90369 0.89238 0.84020 0.90851 0.87744 0.76864 0.91289 0.88319 0.85958 0.89061 0.87988 0.89139 0.88155 0.86818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.94 71.98 0.64 -0.60 16 2 C -0.07 -0.97 2.10 -11.54 -0.02 -0.99 16 3 H 0.11 1.01 5.95 -2.39 -0.01 0.99 16 4 C 0.52 10.41 6.84 87.66 0.60 11.01 16 5 O -0.58 -16.45 15.22 -3.03 -0.05 -16.49 16 6 N -0.61 -10.63 3.02 -817.04 -2.47 -13.09 16 7 C 0.08 1.42 6.65 86.35 0.57 1.99 16 8 C 0.05 0.98 6.98 72.08 0.50 1.49 16 9 O -0.38 -9.23 10.33 -148.98 -1.54 -10.77 16 10 C 0.08 1.50 2.95 30.69 0.09 1.59 16 11 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 12 C 0.07 1.33 5.36 86.30 0.46 1.79 16 13 N -0.68 -20.55 6.08 -517.92 -3.15 -23.70 16 14 C 0.07 2.19 6.17 85.56 0.53 2.72 16 15 C 0.44 20.55 7.82 87.65 0.69 21.24 16 16 O -0.63 -35.00 15.78 -3.08 -0.05 -35.05 16 17 N -0.57 -29.16 5.29 -306.98 -1.62 -30.78 16 18 C -0.33 -19.00 9.68 84.04 0.81 -18.19 16 19 H 0.08 4.67 7.16 -2.91 -0.02 4.64 16 20 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 21 N -0.92 -49.15 13.05 21.66 0.28 -48.87 16 22 Si 0.99 42.88 29.55 68.60 2.03 44.90 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 C 0.08 1.02 5.49 86.33 0.47 1.49 16 27 C -0.16 -2.37 4.94 -10.80 -0.05 -2.43 16 28 C -0.19 -2.44 10.18 30.62 0.31 -2.13 16 29 C -0.16 -1.58 9.79 30.62 0.30 -1.28 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.53 7.83 -2.39 -0.02 0.51 16 32 H 0.09 0.49 7.44 -2.39 -0.02 0.47 16 33 H 0.09 1.82 7.07 -2.38 -0.02 1.80 16 34 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.34 10.92 8.43 -89.70 -0.76 10.17 16 40 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 42 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 43 H 0.28 13.92 8.31 -92.70 -0.77 13.15 16 44 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.12 0.85 5.53 -2.39 -0.01 0.84 16 46 H 0.09 1.87 7.32 -2.38 -0.02 1.86 16 47 H 0.10 1.16 8.05 -2.38 -0.02 1.14 16 48 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.11 0.75 7.65 -2.39 -0.02 0.73 16 Total: -1.00 -76.68 405.36 -0.72 -77.40 By element: Atomic # 1 Polarization: 39.51 SS G_CDS: -0.53 Total: 38.98 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: 6.38 Total: 17.48 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -6.96 Total: -116.45 kcal Atomic # 8 Polarization: -60.68 SS G_CDS: -1.63 Total: -62.31 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -76.68 -0.72 -77.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280568224.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.862 kcal (2) G-P(sol) polarization free energy of solvation -76.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds