Wall clock time and date at job start Tue Mar 31 2020 22:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47217 * 2 1 4 4 C 1.50705 * 109.47383 * 120.00371 * 2 1 3 5 5 O 1.21276 * 119.99867 * 94.70887 * 4 2 1 6 6 N 1.34772 * 119.99809 * 274.71600 * 4 2 1 7 7 C 1.47152 * 120.98404 * 5.02934 * 6 4 2 8 8 C 1.53301 * 108.38568 * 230.51518 * 7 6 4 9 9 O 1.42956 * 109.22171 * 307.69856 * 8 7 6 10 10 C 1.42960 * 114.17166 * 62.57612 * 9 8 7 11 11 H 1.09011 * 109.50783 * 57.34332 * 10 9 8 12 12 C 1.53000 * 109.51975 * 177.44395 * 10 9 8 13 13 N 1.46905 * 109.47058 * 300.00791 * 12 10 9 14 14 C 1.46893 * 111.00165 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47507 * 179.97438 * 14 13 12 16 16 O 1.21295 * 119.99714 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00318 * 179.97438 * 15 14 13 18 18 C 1.37096 * 120.00272 * 179.97438 * 17 15 14 19 19 H 1.08004 * 119.99958 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00383 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99667 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00208 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47352 * 59.99772 * 22 20 18 24 24 H 1.48497 * 109.47307 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46975 * 299.99810 * 22 20 18 26 26 C 1.47149 * 120.98215 * 184.74872 * 6 4 2 27 27 C 1.53002 * 109.47405 * 240.00134 * 2 1 3 28 28 C 1.53005 * 117.49893 * 128.74350 * 27 2 1 29 29 C 1.53004 * 117.49639 * 60.08748 * 27 2 1 30 30 H 1.09006 * 109.46947 * 178.48023 * 1 2 3 31 31 H 1.08993 * 109.47123 * 298.48416 * 1 2 3 32 32 H 1.09002 * 109.46865 * 58.48382 * 1 2 3 33 33 H 1.09005 * 109.68086 * 350.23364 * 7 6 4 34 34 H 1.08997 * 109.68505 * 110.79332 * 7 6 4 35 35 H 1.08996 * 109.51160 * 67.62120 * 8 7 6 36 36 H 1.09005 * 109.51148 * 187.72138 * 8 7 6 37 37 H 1.09000 * 109.46449 * 59.99888 * 12 10 9 38 38 H 1.08992 * 109.47626 * 180.02562 * 12 10 9 39 39 H 1.00904 * 111.00051 * 56.03411 * 13 12 10 40 40 H 1.08995 * 109.47066 * 300.00155 * 14 13 12 41 41 H 1.09007 * 109.47010 * 59.99829 * 14 13 12 42 42 H 0.96999 * 120.00244 * 0.02562 * 17 15 14 43 43 H 0.96998 * 120.00051 * 180.02562 * 21 20 18 44 44 H 1.08996 * 109.68583 * 249.21087 * 26 6 4 45 45 H 1.09001 * 109.68344 * 9.76263 * 26 6 4 46 46 H 1.08994 * 115.55494 * 274.41966 * 27 2 1 47 47 H 1.09005 * 117.49737 * 0.02562 * 28 27 2 48 48 H 1.09002 * 117.49889 * 145.01881 * 28 27 2 49 49 H 1.08997 * 117.49890 * 214.97557 * 29 27 2 50 50 H 1.09005 * 117.49912 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.3158 -1.8885 1.1772 6 7 2.1665 -0.0368 2.3900 7 6 1.7265 1.3624 2.5085 8 6 2.8741 2.1808 3.1113 9 8 3.3195 1.5512 4.3150 10 6 3.8543 0.2390 4.1260 11 1 4.6823 0.2818 3.4183 12 6 4.3542 -0.3071 5.4650 13 7 5.4017 0.5767 5.9938 14 6 5.9062 0.0830 7.2820 15 6 6.9771 1.0127 7.7919 16 8 7.2890 1.9907 7.1458 17 7 7.5876 0.7580 8.9661 18 6 8.5621 1.6035 9.4297 19 1 8.8405 2.4739 8.8540 20 6 9.1919 1.3406 10.6401 21 7 8.8536 0.2813 11.3402 22 14 10.5192 2.4930 11.2720 23 1 9.9499 3.8527 11.4516 24 1 11.0297 1.9936 12.5739 25 1 11.6339 2.5486 10.2923 26 6 2.7518 -0.6806 3.5767 27 6 2.0400 -0.7212 -1.2493 28 6 3.0763 0.0041 -2.1101 29 6 1.6374 -0.1482 -2.6096 30 1 -0.3633 -1.0274 -0.0273 31 1 -0.3633 0.4901 0.9032 32 1 -0.3633 0.5372 -0.8761 33 1 1.4756 1.7531 1.5222 34 1 0.8540 1.4190 3.1592 35 1 3.6985 2.2306 2.4000 36 1 2.5243 3.1887 3.3345 37 1 3.5253 -0.3512 6.1714 38 1 4.7622 -1.3073 5.3200 39 1 5.0671 1.5251 6.0762 40 1 5.0880 0.0417 8.0009 41 1 6.3246 -0.9149 7.1500 42 1 7.3379 -0.0239 9.4830 43 1 9.2929 0.0979 12.1854 44 1 1.9807 -0.8263 4.3332 45 1 3.1801 -1.6435 3.2983 46 1 2.1253 -1.8045 -1.1649 47 1 3.3950 0.9949 -1.7862 48 1 3.8433 -0.6022 -2.5922 49 1 1.4584 -0.8545 -3.4202 50 1 1.0089 0.7423 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280568226.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:29 Heat of formation + Delta-G solvation = -87.108320 kcal Electronic energy + Delta-G solvation = -29347.934721 eV Core-core repulsion = 25183.080730 eV Total energy + Delta-G solvation = -4164.853991 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.91734 -39.11919 -38.18545 -37.52851 -35.66122 -34.89890 -33.83008 -32.84638 -31.70328 -31.14590 -28.78684 -27.33657 -25.64856 -24.89635 -23.81804 -23.09616 -22.68348 -21.60852 -20.81205 -19.29781 -19.19833 -17.93877 -17.81636 -16.98780 -16.63012 -16.21658 -15.92677 -15.44594 -15.27533 -15.17246 -14.92464 -14.64652 -14.44273 -14.16778 -14.06578 -13.93003 -13.47686 -13.33702 -13.19936 -12.85152 -12.64091 -12.52628 -12.37727 -11.99081 -11.87457 -11.73657 -11.62128 -11.46198 -11.37519 -11.32851 -11.00130 -10.92754 -10.78262 -10.46196 -10.41911 -10.34592 -10.18382 -9.94115 -9.46829 -8.88614 -8.41720 -8.01997 -7.92286 -6.38486 -3.79205 2.25843 2.45845 3.22492 3.27784 3.32378 3.36967 3.46967 3.94870 3.96547 4.06560 4.12944 4.26139 4.43021 4.46736 4.51545 4.62104 4.74044 4.74713 4.83122 4.88547 4.94090 5.00957 5.04185 5.17279 5.19678 5.25000 5.28165 5.29303 5.31376 5.37665 5.41533 5.49810 5.52202 5.64616 5.69876 5.70502 5.78429 5.88739 5.89201 6.01659 6.01853 6.30261 6.92806 6.96133 7.23752 7.58047 7.75351 7.79719 8.09678 8.65079 9.21148 9.57965 10.09834 10.79264 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027810 B = 0.001706 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.575002 B =16406.932737 C =16516.055819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.080 4.080 3 H 0.093 0.907 4 C 0.525 3.475 5 O -0.535 6.535 6 N -0.615 5.615 7 C 0.069 3.931 8 C 0.049 3.951 9 O -0.370 6.370 10 C 0.082 3.918 11 H 0.075 0.925 12 C 0.070 3.930 13 N -0.666 5.666 14 C 0.050 3.950 15 C 0.442 3.558 16 O -0.582 6.582 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.084 3.916 27 C -0.142 4.142 28 C -0.179 4.179 29 C -0.175 4.175 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.107 0.893 37 H 0.037 0.963 38 H 0.087 0.913 39 H 0.358 0.642 40 H 0.044 0.956 41 H 0.086 0.914 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.076 0.924 45 H 0.102 0.898 46 H 0.119 0.881 47 H 0.094 0.906 48 H 0.096 0.904 49 H 0.096 0.904 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.108 -1.094 -22.796 30.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 H 0.111 0.889 4 C 0.314 3.686 5 O -0.411 6.411 6 N -0.350 5.350 7 C -0.054 4.054 8 C -0.029 4.029 9 O -0.288 6.288 10 C 0.023 3.977 11 H 0.093 0.907 12 C -0.061 4.061 13 N -0.299 5.299 14 C -0.083 4.083 15 C 0.227 3.773 16 O -0.466 6.466 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.039 4.039 27 C -0.160 4.160 28 C -0.216 4.216 29 C -0.212 4.212 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.055 0.945 38 H 0.105 0.895 39 H 0.178 0.822 40 H 0.062 0.938 41 H 0.104 0.896 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.121 0.879 46 H 0.137 0.863 47 H 0.112 0.888 48 H 0.114 0.886 49 H 0.114 0.886 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.172 -1.346 -23.247 30.163 hybrid contribution -0.218 0.191 1.108 1.145 sum -19.390 -1.155 -22.139 29.453 Atomic orbital electron populations 1.21727 0.92095 1.03325 1.02581 1.20867 0.97742 0.99703 0.91763 0.88941 1.20555 0.77123 0.87085 0.83859 1.90686 1.50084 1.15725 1.84593 1.48131 1.62250 1.13220 1.11356 1.22584 0.98586 0.81406 1.02843 1.22937 0.95558 0.96531 0.87860 1.87985 1.80932 1.29576 1.30343 1.22642 0.94139 0.82609 0.98270 0.90732 1.21903 0.93435 0.97346 0.93389 1.60051 1.36296 1.06527 1.27044 1.21678 0.97174 0.99289 0.90122 1.19801 0.86076 0.88177 0.83231 1.90523 1.67275 1.30678 1.58171 1.41850 1.34375 1.25585 1.18296 1.19659 1.13027 1.06636 1.03580 0.87989 1.25257 0.99083 0.97297 0.96327 1.69606 1.43150 1.26626 1.15002 0.85911 0.80561 0.79906 0.77786 1.19944 1.21004 1.19918 1.22386 0.96683 0.97854 0.86944 1.22135 1.03811 1.00308 0.89749 1.23069 0.92643 1.01964 1.03938 1.22969 0.98117 1.03183 0.96906 0.91605 0.92074 0.91094 0.88680 0.90196 0.92415 0.87455 0.94492 0.89489 0.82166 0.93806 0.89608 0.77455 0.91861 0.90556 0.87928 0.86332 0.88760 0.88577 0.88588 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 8.84 37.16 0.33 -0.43 16 2 C -0.08 -0.56 2.02 -91.77 -0.19 -0.74 16 3 H 0.09 0.50 6.20 -51.93 -0.32 0.18 16 4 C 0.53 5.42 6.81 -10.98 -0.07 5.34 16 5 O -0.53 -7.50 15.30 5.56 0.09 -7.41 16 6 N -0.62 -5.69 3.01 -172.02 -0.52 -6.21 16 7 C 0.07 0.45 6.04 -3.53 -0.02 0.43 16 8 C 0.05 0.40 6.99 37.31 0.26 0.66 16 9 O -0.37 -4.36 9.72 -35.23 -0.34 -4.70 16 10 C 0.08 0.95 3.06 -26.36 -0.08 0.87 16 11 H 0.07 0.96 8.14 -51.92 -0.42 0.53 16 12 C 0.07 0.88 5.43 -3.82 -0.02 0.86 16 13 N -0.67 -11.28 6.13 -115.06 -0.70 -11.98 16 14 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 15 C 0.44 10.70 7.82 -10.99 -0.09 10.61 16 16 O -0.58 -16.22 15.78 5.54 0.09 -16.14 16 17 N -0.56 -14.57 5.29 -10.96 -0.06 -14.62 16 18 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 19 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.79 13.05 55.50 0.72 -24.07 16 22 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.08 0.86 5.94 -3.32 -0.02 0.84 16 27 C -0.14 -1.08 4.96 -90.61 -0.45 -1.53 16 28 C -0.18 -1.20 10.18 -26.69 -0.27 -1.47 16 29 C -0.17 -0.98 9.76 -26.69 -0.26 -1.25 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.28 7.49 -51.93 -0.39 -0.10 16 32 H 0.07 0.28 7.35 -51.93 -0.38 -0.10 16 33 H 0.10 0.39 5.30 -51.93 -0.28 0.12 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.36 6.51 7.82 -39.29 -0.31 6.20 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.39 9.65 7.90 -40.82 -0.32 9.32 16 43 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.10 1.14 7.12 -51.93 -0.37 0.77 16 46 H 0.12 1.15 7.33 -51.93 -0.38 0.77 16 47 H 0.09 0.57 8.05 -51.93 -0.42 0.15 16 48 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.09 0.42 7.62 -51.93 -0.40 0.03 16 LS Contribution 403.68 15.07 6.08 6.08 Total: -1.00 -34.37 403.68 -8.97 -43.33 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -8.15 Total: 12.52 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -1.15 Total: 6.93 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.56 Total: -56.88 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.17 Total: -28.25 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.37 -8.97 -43.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280568226.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.775 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds