Wall clock time and date at job start Tue Mar 31 2020 23:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47694 * 2 1 4 4 C 1.50700 * 109.46995 * 120.00350 * 2 1 3 5 5 O 1.21277 * 120.00597 * 119.99577 * 4 2 1 6 6 N 1.34778 * 119.99676 * 299.99797 * 4 2 1 7 7 C 1.46504 * 119.99875 * 185.18090 * 6 4 2 8 8 C 1.53004 * 109.54098 * 298.63881 * 7 6 4 9 9 N 1.46491 * 109.47462 * 305.27385 * 8 7 6 10 10 C 1.36936 * 120.00145 * 185.19458 * 9 8 7 11 11 H 1.07994 * 119.99750 * 354.22246 * 10 9 8 12 12 C 1.38820 * 119.99885 * 174.49186 * 10 9 8 13 13 N 1.31621 * 119.99570 * 183.32434 * 12 10 9 14 14 Si 1.86802 * 119.99967 * 3.33030 * 12 10 9 15 15 H 1.48499 * 109.46924 * 92.86931 * 14 12 10 16 16 H 1.48499 * 109.46515 * 212.86999 * 14 12 10 17 17 H 1.48501 * 109.46988 * 332.86560 * 14 12 10 18 18 C 1.53170 * 109.61779 * 58.86158 * 7 6 4 19 19 C 1.53098 * 109.16072 * 62.93127 * 18 7 6 20 20 O 1.42903 * 109.41507 * 57.61103 * 19 18 7 21 21 C 1.42905 * 114.09257 * 298.83816 * 20 19 18 22 22 C 1.53088 * 109.41554 * 61.16357 * 21 20 19 23 23 C 1.53004 * 109.46932 * 239.99856 * 2 1 3 24 24 H 1.09000 * 110.22009 * 300.47622 * 23 2 1 25 25 C 1.54477 * 110.24556 * 62.50119 * 23 2 1 26 26 C 1.54633 * 101.76232 * 144.41421 * 25 23 2 27 27 C 1.51278 * 104.19841 * 335.20081 * 26 25 23 28 28 O 1.21274 * 124.94357 * 196.23024 * 27 26 25 29 29 N 1.34421 * 110.11263 * 16.25562 * 27 26 25 30 30 H 1.09002 * 109.47500 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47227 * 300.00404 * 1 2 3 32 32 H 1.09004 * 109.47115 * 59.99920 * 1 2 3 33 33 H 0.96996 * 120.00392 * 5.18207 * 6 4 2 34 34 H 1.09001 * 109.46955 * 185.27506 * 8 7 6 35 35 H 1.09003 * 109.47150 * 65.27920 * 8 7 6 36 36 H 0.97001 * 119.99787 * 5.19669 * 9 8 7 37 37 H 0.96998 * 119.99406 * 180.02562 * 13 12 10 38 38 H 1.09000 * 109.52517 * 182.83407 * 18 7 6 39 39 H 1.09001 * 109.52338 * 303.02687 * 18 7 6 40 40 H 1.08997 * 109.47903 * 297.62308 * 19 18 7 41 41 H 1.09001 * 109.48773 * 177.59873 * 19 18 7 42 42 H 1.08994 * 109.48588 * 301.17372 * 21 20 19 43 43 H 1.09007 * 109.48528 * 181.14681 * 21 20 19 44 44 H 1.09000 * 109.52598 * 182.48033 * 22 21 20 45 45 H 1.08999 * 109.57566 * 62.32248 * 22 21 20 46 46 H 1.08995 * 110.97301 * 262.53124 * 25 23 2 47 47 H 1.09004 * 110.97169 * 26.29892 * 25 23 2 48 48 H 1.09003 * 110.48312 * 216.52456 * 26 25 23 49 49 H 1.09002 * 110.59917 * 93.93988 * 26 25 23 50 50 H 0.96996 * 124.34664 * 180.38737 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1192 6 7 1.7067 -0.2500 2.4545 7 6 2.2858 -0.8707 3.6486 8 6 1.8694 -2.3415 3.7138 9 7 0.4092 -2.4391 3.6496 10 6 -0.2031 -3.6549 3.7984 11 1 0.3914 -4.5536 3.8696 12 6 -1.5880 -3.7326 3.8521 13 7 -2.1744 -4.8924 4.0606 14 14 -2.6194 -2.1913 3.6283 15 1 -2.9918 -2.0483 2.1978 16 1 -3.8504 -2.2956 4.4523 17 1 -1.8359 -1.0048 4.0568 18 6 3.8132 -0.7727 3.5897 19 6 4.2230 0.7024 3.6041 20 8 3.7005 1.3291 4.7773 21 6 2.2741 1.3098 4.8629 22 6 1.7860 -0.1407 4.8991 23 6 2.0399 -0.7213 -1.2493 24 1 1.6764 -1.7488 -1.2658 25 6 1.5872 0.0285 -2.5217 26 6 2.8020 -0.1750 -3.4566 27 6 3.9623 -0.4025 -2.5130 28 8 5.1330 -0.3268 -2.8207 29 7 3.5070 -0.7012 -1.2840 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.0889 0.4923 2.5450 34 1 2.2219 -2.7778 4.6485 35 1 2.3070 -2.8807 2.8736 36 1 -0.1240 -1.6424 3.5016 37 1 -3.1422 -4.9467 4.0978 38 1 4.2443 -1.2789 4.4534 39 1 4.1733 -1.2418 2.6741 40 1 3.8253 1.1988 2.7189 41 1 5.3104 0.7777 3.6054 42 1 1.8509 1.8142 3.9943 43 1 1.9574 1.8227 5.7711 44 1 0.6964 -0.1580 4.9199 45 1 2.1753 -0.6349 5.7892 46 1 0.6902 -0.4250 -2.9434 47 1 1.4272 1.0867 -2.3148 48 1 2.9712 0.7158 -4.0615 49 1 2.6530 -1.0459 -4.0950 50 1 4.0751 -0.8806 -0.5186 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281266900.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:44 Heat of formation + Delta-G solvation = -106.913079 kcal Electronic energy + Delta-G solvation = -32312.831594 eV Core-core repulsion = 28147.118804 eV Total energy + Delta-G solvation = -4165.712790 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.13076 -40.25680 -38.65019 -36.86562 -35.87870 -33.99115 -33.46269 -31.50779 -31.39477 -31.21448 -30.78414 -27.03698 -26.87285 -24.71419 -23.81675 -23.37474 -21.91126 -21.35408 -20.56853 -20.33717 -19.26346 -17.80824 -17.61006 -17.34299 -16.38485 -16.19708 -16.07468 -15.63527 -15.29079 -14.95773 -14.61531 -14.46985 -14.34884 -13.93870 -13.80348 -13.67974 -13.25666 -13.20286 -13.01812 -12.89441 -12.64782 -12.58768 -12.39383 -12.27950 -11.97350 -11.90096 -11.62388 -11.47913 -11.32297 -11.23567 -11.22364 -10.98794 -10.67126 -10.44023 -10.24897 -9.95722 -9.72815 -9.68033 -9.45344 -9.17636 -8.86649 -8.80693 -7.21946 -5.80228 -3.14450 2.51198 2.68914 3.12082 3.22445 3.26511 3.29465 3.35837 3.80061 4.09070 4.17853 4.35401 4.51583 4.53112 4.67555 4.80688 4.83196 4.87302 4.90075 4.92504 4.96971 5.02900 5.13433 5.27028 5.39698 5.39947 5.46442 5.48588 5.56255 5.57059 5.58855 5.62905 5.66634 5.81828 5.84581 5.88835 5.98267 6.03115 6.13147 6.19906 6.34270 6.68755 6.75229 6.88026 7.01427 7.10296 7.56076 7.98738 8.18669 8.29863 8.38910 9.18414 9.90006 10.11384 11.38643 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009451 B = 0.004709 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.789769 B = 5944.407537 C = 7720.309822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 H 0.100 0.900 4 C 0.523 3.477 5 O -0.524 6.524 6 N -0.716 5.716 7 C 0.170 3.830 8 C 0.149 3.851 9 N -0.749 5.749 10 C -0.236 4.236 11 H 0.088 0.912 12 C 0.003 3.997 13 N -0.934 5.934 14 Si 0.884 3.116 15 H -0.286 1.286 16 H -0.291 1.291 17 H -0.281 1.281 18 C -0.162 4.162 19 C 0.066 3.934 20 O -0.383 6.383 21 C 0.061 3.939 22 C -0.156 4.156 23 C 0.150 3.850 24 H 0.094 0.906 25 C -0.129 4.129 26 C -0.157 4.157 27 C 0.515 3.485 28 O -0.544 6.544 29 N -0.714 5.714 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.394 0.606 34 H 0.033 0.967 35 H 0.052 0.948 36 H 0.357 0.643 37 H 0.258 0.742 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.045 0.955 41 H 0.091 0.909 42 H 0.045 0.955 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.084 0.916 48 H 0.100 0.900 49 H 0.104 0.896 50 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.527 16.939 -8.500 20.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 H 0.118 0.882 4 C 0.309 3.691 5 O -0.400 6.400 6 N -0.368 5.368 7 C 0.085 3.915 8 C 0.021 3.979 9 N -0.394 5.394 10 C -0.366 4.366 11 H 0.106 0.894 12 C -0.193 4.193 13 N -0.582 5.582 14 Si 0.715 3.285 15 H -0.212 1.212 16 H -0.218 1.218 17 H -0.207 1.207 18 C -0.201 4.201 19 C -0.011 4.011 20 O -0.302 6.302 21 C -0.016 4.016 22 C -0.194 4.194 23 C 0.044 3.956 24 H 0.111 0.889 25 C -0.166 4.166 26 C -0.197 4.197 27 C 0.301 3.699 28 O -0.422 6.422 29 N -0.370 5.370 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.228 0.772 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.190 0.810 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.063 0.937 43 H 0.112 0.888 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.112 0.888 47 H 0.103 0.897 48 H 0.118 0.882 49 H 0.123 0.877 50 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 7.685 16.112 -8.628 19.826 hybrid contribution -1.397 1.050 0.185 1.758 sum 6.287 17.162 -8.442 20.133 Atomic orbital electron populations 1.21795 0.91598 1.04218 1.02946 1.21739 0.98536 1.00820 0.93128 0.88215 1.20336 0.80313 0.84160 0.84281 1.90661 1.38251 1.24638 1.86425 1.46042 1.48229 1.36907 1.05627 1.20685 0.92384 0.94913 0.83566 1.21065 0.85836 0.91070 0.99919 1.42547 1.00928 1.06879 1.89081 1.19053 0.90355 0.85654 1.41557 0.89392 1.24663 0.96256 0.96101 1.02245 1.69705 1.09067 1.22949 1.56510 0.86559 0.80472 0.83760 0.77693 1.21247 1.21803 1.20717 1.22523 0.95240 0.97474 1.04882 1.22520 0.98854 0.92169 0.87536 1.87919 1.20504 1.78571 1.43216 1.22595 0.81367 0.95955 1.01638 1.22462 1.02713 0.96016 0.98246 1.21495 0.80263 1.00443 0.93385 0.88860 1.22731 0.98317 1.01652 0.93944 1.22358 0.93928 1.04978 0.98441 1.20884 0.89635 0.75414 0.83951 1.90743 1.18967 1.52943 1.79539 1.46391 1.07927 1.70392 1.12279 0.90797 0.91749 0.90962 0.77161 0.94886 0.93033 0.80978 0.93138 0.90019 0.88789 0.93648 0.89115 0.93686 0.88758 0.89693 0.89099 0.88754 0.89728 0.88173 0.87747 0.74333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.89 37.16 0.33 -0.97 16 2 C -0.12 -1.11 2.39 -91.77 -0.22 -1.33 16 3 H 0.10 0.73 8.13 -51.93 -0.42 0.31 16 4 C 0.52 6.71 6.33 -10.98 -0.07 6.64 16 5 O -0.52 -8.37 10.85 5.56 0.06 -8.31 16 6 N -0.72 -8.80 3.50 -47.44 -0.17 -8.96 16 7 C 0.17 2.39 0.32 -131.63 -0.04 2.35 16 8 C 0.15 2.84 4.89 -4.04 -0.02 2.82 16 9 N -0.75 -16.76 4.96 -59.91 -0.30 -17.06 16 10 C -0.24 -6.54 10.47 -15.06 -0.16 -6.70 16 11 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 12 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 13 N -0.93 -28.92 13.97 55.49 0.78 -28.15 16 14 Si 0.88 20.97 27.84 -169.99 -4.73 16.24 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 H -0.28 -6.01 6.37 56.52 0.36 -5.65 16 18 C -0.16 -2.08 4.75 -26.59 -0.13 -2.20 16 19 C 0.07 0.74 6.68 37.21 0.25 0.99 16 20 O -0.38 -4.71 10.77 -35.23 -0.38 -5.09 16 21 C 0.06 0.66 6.67 37.20 0.25 0.90 16 22 C -0.16 -2.02 4.80 -26.59 -0.13 -2.15 16 23 C 0.15 1.44 2.56 -67.01 -0.17 1.27 16 24 H 0.09 1.05 8.12 -51.93 -0.42 0.63 16 25 C -0.13 -0.84 5.62 -25.10 -0.14 -0.98 16 26 C -0.16 -1.25 6.86 -26.74 -0.18 -1.43 16 27 C 0.52 6.39 8.43 -10.86 -0.09 6.29 16 28 O -0.54 -9.06 18.03 5.56 0.10 -8.96 16 29 N -0.71 -8.24 5.55 -52.76 -0.29 -8.53 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.55 7.46 -51.93 -0.39 0.16 16 32 H 0.07 0.45 7.32 -51.93 -0.38 0.07 16 33 H 0.39 4.03 6.86 -40.82 -0.28 3.75 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 1.10 6.27 -51.93 -0.33 0.77 16 36 H 0.36 7.57 4.45 -40.82 -0.18 7.39 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.09 1.31 6.21 -51.93 -0.32 0.99 16 40 H 0.05 0.48 7.75 -51.93 -0.40 0.08 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.04 0.42 7.13 -51.93 -0.37 0.05 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.08 1.19 7.42 -51.93 -0.39 0.81 16 45 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.43 7.88 -51.93 -0.41 0.03 16 48 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 50 H 0.42 5.34 7.42 -40.82 -0.30 5.03 16 LS Contribution 383.29 15.07 5.78 5.78 Total: -1.00 -35.15 383.29 -7.77 -42.92 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -8.00 Total: 14.65 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -0.62 Total: 5.48 kcal Atomic # 7 Polarization: -62.73 SS G_CDS: 0.02 Total: -62.71 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.22 Total: -22.36 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.73 Total: 16.24 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.15 -7.77 -42.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281266900.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.988 kcal (2) G-P(sol) polarization free energy of solvation -35.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds