Wall clock time and date at job start Tue Mar 31 2020 23:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47694 * 2 1 4 4 C 1.50700 * 109.46995 * 120.00350 * 2 1 3 5 5 O 1.21277 * 120.00597 * 119.99577 * 4 2 1 6 6 N 1.34778 * 119.99676 * 299.99797 * 4 2 1 7 7 C 1.46504 * 119.99875 * 185.18090 * 6 4 2 8 8 C 1.53004 * 109.54098 * 298.63881 * 7 6 4 9 9 N 1.46491 * 109.47462 * 305.27385 * 8 7 6 10 10 C 1.36936 * 120.00145 * 185.19458 * 9 8 7 11 11 H 1.07994 * 119.99750 * 354.22246 * 10 9 8 12 12 C 1.38820 * 119.99885 * 174.49186 * 10 9 8 13 13 N 1.31621 * 119.99570 * 183.32434 * 12 10 9 14 14 Si 1.86802 * 119.99967 * 3.33030 * 12 10 9 15 15 H 1.48499 * 109.46924 * 92.86931 * 14 12 10 16 16 H 1.48499 * 109.46515 * 212.86999 * 14 12 10 17 17 H 1.48501 * 109.46988 * 332.86560 * 14 12 10 18 18 C 1.53170 * 109.61779 * 58.86158 * 7 6 4 19 19 C 1.53098 * 109.16072 * 62.93127 * 18 7 6 20 20 O 1.42903 * 109.41507 * 57.61103 * 19 18 7 21 21 C 1.42905 * 114.09257 * 298.83816 * 20 19 18 22 22 C 1.53088 * 109.41554 * 61.16357 * 21 20 19 23 23 C 1.53004 * 109.46932 * 239.99856 * 2 1 3 24 24 H 1.09000 * 110.22009 * 300.47622 * 23 2 1 25 25 C 1.54477 * 110.24556 * 62.50119 * 23 2 1 26 26 C 1.54633 * 101.76232 * 144.41421 * 25 23 2 27 27 C 1.51278 * 104.19841 * 335.20081 * 26 25 23 28 28 O 1.21274 * 124.94357 * 196.23024 * 27 26 25 29 29 N 1.34421 * 110.11263 * 16.25562 * 27 26 25 30 30 H 1.09002 * 109.47500 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47227 * 300.00404 * 1 2 3 32 32 H 1.09004 * 109.47115 * 59.99920 * 1 2 3 33 33 H 0.96996 * 120.00392 * 5.18207 * 6 4 2 34 34 H 1.09001 * 109.46955 * 185.27506 * 8 7 6 35 35 H 1.09003 * 109.47150 * 65.27920 * 8 7 6 36 36 H 0.97001 * 119.99787 * 5.19669 * 9 8 7 37 37 H 0.96998 * 119.99406 * 180.02562 * 13 12 10 38 38 H 1.09000 * 109.52517 * 182.83407 * 18 7 6 39 39 H 1.09001 * 109.52338 * 303.02687 * 18 7 6 40 40 H 1.08997 * 109.47903 * 297.62308 * 19 18 7 41 41 H 1.09001 * 109.48773 * 177.59873 * 19 18 7 42 42 H 1.08994 * 109.48588 * 301.17372 * 21 20 19 43 43 H 1.09007 * 109.48528 * 181.14681 * 21 20 19 44 44 H 1.09000 * 109.52598 * 182.48033 * 22 21 20 45 45 H 1.08999 * 109.57566 * 62.32248 * 22 21 20 46 46 H 1.08995 * 110.97301 * 262.53124 * 25 23 2 47 47 H 1.09004 * 110.97169 * 26.29892 * 25 23 2 48 48 H 1.09003 * 110.48312 * 216.52456 * 26 25 23 49 49 H 1.09002 * 110.59917 * 93.93988 * 26 25 23 50 50 H 0.96996 * 124.34664 * 180.38737 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1192 6 7 1.7067 -0.2500 2.4545 7 6 2.2858 -0.8707 3.6486 8 6 1.8694 -2.3415 3.7138 9 7 0.4092 -2.4391 3.6496 10 6 -0.2031 -3.6549 3.7984 11 1 0.3914 -4.5536 3.8696 12 6 -1.5880 -3.7326 3.8521 13 7 -2.1744 -4.8924 4.0606 14 14 -2.6194 -2.1913 3.6283 15 1 -2.9918 -2.0483 2.1978 16 1 -3.8504 -2.2956 4.4523 17 1 -1.8359 -1.0048 4.0568 18 6 3.8132 -0.7727 3.5897 19 6 4.2230 0.7024 3.6041 20 8 3.7005 1.3291 4.7773 21 6 2.2741 1.3098 4.8629 22 6 1.7860 -0.1407 4.8991 23 6 2.0399 -0.7213 -1.2493 24 1 1.6764 -1.7488 -1.2658 25 6 1.5872 0.0285 -2.5217 26 6 2.8020 -0.1750 -3.4566 27 6 3.9623 -0.4025 -2.5130 28 8 5.1330 -0.3268 -2.8207 29 7 3.5070 -0.7012 -1.2840 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.0889 0.4923 2.5450 34 1 2.2219 -2.7778 4.6485 35 1 2.3070 -2.8807 2.8736 36 1 -0.1240 -1.6424 3.5016 37 1 -3.1422 -4.9467 4.0978 38 1 4.2443 -1.2789 4.4534 39 1 4.1733 -1.2418 2.6741 40 1 3.8253 1.1988 2.7189 41 1 5.3104 0.7777 3.6054 42 1 1.8509 1.8142 3.9943 43 1 1.9574 1.8227 5.7711 44 1 0.6964 -0.1580 4.9199 45 1 2.1753 -0.6349 5.7892 46 1 0.6902 -0.4250 -2.9434 47 1 1.4272 1.0867 -2.3148 48 1 2.9712 0.7158 -4.0615 49 1 2.6530 -1.0459 -4.0950 50 1 4.0751 -0.8806 -0.5186 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281266900.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:43 Heat of formation + Delta-G solvation = -135.178417 kcal Electronic energy + Delta-G solvation = -32314.057271 eV Core-core repulsion = 28147.118804 eV Total energy + Delta-G solvation = -4166.938467 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.11176 -41.19910 -39.63656 -37.87251 -37.19206 -35.54240 -34.52907 -33.18126 -32.25336 -32.11387 -32.04450 -28.52570 -27.65836 -25.62497 -25.10362 -24.57714 -23.07626 -22.58380 -21.41021 -21.20083 -20.46480 -19.75119 -18.49336 -18.26993 -17.27850 -17.18839 -17.01697 -16.80086 -16.45419 -16.30517 -15.89917 -15.52460 -15.42636 -15.28455 -14.94043 -14.73737 -14.54761 -14.37867 -13.95032 -13.89817 -13.79651 -13.63848 -13.46638 -13.24458 -13.10440 -12.90854 -12.84544 -12.80227 -12.38471 -12.33276 -12.13310 -12.09703 -11.88044 -11.86246 -11.73196 -11.38158 -11.02767 -10.92533 -10.68655 -10.41995 -10.10623 -9.95344 -9.25613 -8.02624 -5.36592 1.31426 1.40808 1.48721 1.58058 1.69806 2.14414 2.43573 2.48177 2.93570 3.25687 3.35681 3.45873 3.47985 3.63179 3.73264 3.80907 3.86699 3.94765 4.07075 4.15094 4.23176 4.24954 4.31915 4.34540 4.41521 4.59277 4.71470 4.71990 4.75789 4.79814 4.81999 4.87312 4.87474 4.98804 5.04062 5.09111 5.09462 5.11653 5.16759 5.22598 5.35218 5.58765 5.74593 5.84099 6.10736 6.19444 6.22801 6.59403 7.07539 7.22889 7.32985 7.80432 8.06748 9.19542 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009451 B = 0.004709 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.789769 B = 5944.407537 C = 7720.309822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 H 0.132 0.868 4 C 0.513 3.487 5 O -0.563 6.563 6 N -0.710 5.710 7 C 0.180 3.820 8 C 0.150 3.850 9 N -0.739 5.739 10 C -0.236 4.236 11 H 0.039 0.961 12 C -0.066 4.066 13 N -0.987 5.987 14 Si 0.961 3.039 15 H -0.271 1.271 16 H -0.298 1.298 17 H -0.240 1.240 18 C -0.157 4.157 19 C 0.073 3.927 20 O -0.394 6.394 21 C 0.065 3.935 22 C -0.153 4.153 23 C 0.144 3.856 24 H 0.068 0.932 25 C -0.114 4.114 26 C -0.148 4.148 27 C 0.503 3.497 28 O -0.598 6.598 29 N -0.715 5.715 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.409 0.591 34 H 0.017 0.983 35 H 0.024 0.976 36 H 0.368 0.632 37 H 0.258 0.742 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.102 0.898 42 H 0.069 0.931 43 H 0.113 0.887 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.116 0.884 47 H 0.112 0.888 48 H 0.119 0.881 49 H 0.113 0.887 50 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.934 21.747 -9.652 24.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.130 4.130 3 H 0.150 0.850 4 C 0.301 3.699 5 O -0.441 6.441 6 N -0.363 5.363 7 C 0.094 3.906 8 C 0.023 3.977 9 N -0.386 5.386 10 C -0.367 4.367 11 H 0.057 0.943 12 C -0.257 4.257 13 N -0.638 5.638 14 Si 0.786 3.214 15 H -0.197 1.197 16 H -0.225 1.225 17 H -0.163 1.163 18 C -0.196 4.196 19 C -0.004 4.004 20 O -0.313 6.313 21 C -0.012 4.012 22 C -0.191 4.191 23 C 0.038 3.962 24 H 0.086 0.914 25 C -0.152 4.152 26 C -0.188 4.188 27 C 0.292 3.708 28 O -0.480 6.480 29 N -0.368 5.368 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.126 0.874 33 H 0.246 0.754 34 H 0.035 0.965 35 H 0.042 0.958 36 H 0.203 0.797 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.120 0.880 42 H 0.087 0.913 43 H 0.131 0.869 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.135 0.865 47 H 0.130 0.870 48 H 0.137 0.863 49 H 0.131 0.869 50 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 6.084 20.973 -9.778 23.927 hybrid contribution -0.818 -0.661 0.593 1.207 sum 5.267 20.312 -9.186 22.906 Atomic orbital electron populations 1.21853 0.90561 1.02855 1.05280 1.21751 0.99083 1.01641 0.90505 0.85002 1.21148 0.79545 0.83809 0.85385 1.90664 1.39921 1.26527 1.86997 1.45958 1.48376 1.37048 1.04883 1.20392 0.93322 0.91569 0.85358 1.21061 0.83781 0.95055 0.97816 1.42328 1.02197 1.05304 1.88724 1.18930 0.90511 0.86181 1.41107 0.94307 1.25621 0.97582 1.00408 1.02096 1.69932 1.09339 1.26313 1.58175 0.85336 0.77900 0.79973 0.78153 1.19710 1.22544 1.16348 1.22444 0.94186 0.99160 1.03795 1.22508 0.99667 0.90330 0.87854 1.87921 1.21454 1.78332 1.43577 1.22709 0.80608 0.94102 1.03765 1.22427 1.02223 0.97712 0.96743 1.21643 0.78944 0.99993 0.95584 0.91369 1.22808 0.98145 1.02950 0.91254 1.22400 0.92279 1.06234 0.97908 1.21722 0.90021 0.74355 0.84737 1.90704 1.21445 1.55369 1.80444 1.46573 1.08929 1.69452 1.11871 0.93920 0.90762 0.87391 0.75376 0.96499 0.95777 0.79724 0.93365 0.90805 0.90280 0.92357 0.87979 0.91257 0.86892 0.90218 0.90289 0.86527 0.87001 0.86260 0.86863 0.75643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.89 71.98 0.64 -1.34 16 2 C -0.11 -1.66 2.39 -11.54 -0.03 -1.69 16 3 H 0.13 1.26 8.13 -2.39 -0.02 1.24 16 4 C 0.51 12.51 6.33 87.66 0.56 13.06 16 5 O -0.56 -18.50 10.85 -3.02 -0.03 -18.53 16 6 N -0.71 -15.86 3.50 -422.38 -1.48 -17.34 16 7 C 0.18 4.94 0.32 3.72 0.00 4.94 16 8 C 0.15 5.96 4.89 86.38 0.42 6.38 16 9 N -0.74 -33.40 4.96 -343.46 -1.70 -35.11 16 10 C -0.24 -13.62 10.47 84.04 0.88 -12.74 16 11 H 0.04 2.56 8.06 -2.91 -0.02 2.53 16 12 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 13 N -0.99 -63.27 13.97 21.65 0.30 -62.97 16 14 Si 0.96 42.41 27.84 68.60 1.91 44.32 16 15 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 16 H -0.30 -13.57 7.11 99.48 0.71 -12.87 16 17 H -0.24 -8.84 6.37 99.48 0.63 -8.21 16 18 C -0.16 -3.99 4.75 30.68 0.15 -3.84 16 19 C 0.07 1.47 6.68 72.01 0.48 1.96 16 20 O -0.39 -8.49 10.77 -148.98 -1.60 -10.09 16 21 C 0.06 1.14 6.67 72.01 0.48 1.62 16 22 C -0.15 -3.64 4.80 30.68 0.15 -3.50 16 23 C 0.14 2.48 2.56 45.44 0.12 2.60 16 24 H 0.07 1.53 8.12 -2.39 -0.02 1.51 16 25 C -0.11 -1.00 5.62 31.65 0.18 -0.82 16 26 C -0.15 -1.95 6.86 30.59 0.21 -1.74 16 27 C 0.50 12.18 8.43 87.90 0.74 12.92 16 28 O -0.60 -20.32 18.03 -3.01 -0.05 -20.37 16 29 N -0.72 -16.21 5.55 -439.44 -2.44 -18.65 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.87 7.46 -2.39 -0.02 0.86 16 32 H 0.11 0.70 7.32 -2.39 -0.02 0.68 16 33 H 0.41 6.65 6.86 -92.71 -0.64 6.02 16 34 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.02 1.11 6.27 -2.39 -0.01 1.09 16 36 H 0.37 14.92 4.45 -92.71 -0.41 14.50 16 37 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 39 H 0.08 2.28 6.21 -2.39 -0.01 2.26 16 40 H 0.06 1.04 7.75 -2.39 -0.02 1.03 16 41 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.07 0.92 7.13 -2.39 -0.02 0.90 16 43 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.08 2.00 7.42 -2.39 -0.02 1.98 16 45 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.11 0.45 7.88 -2.39 -0.02 0.44 16 48 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.40 10.70 7.42 -92.71 -0.69 10.01 16 Total: -1.00 -83.66 383.29 -0.50 -84.16 By element: Atomic # 1 Polarization: 40.99 SS G_CDS: -0.83 Total: 40.16 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: 5.44 Total: 14.43 kcal Atomic # 7 Polarization: -128.75 SS G_CDS: -5.32 Total: -134.07 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: -1.69 Total: -49.00 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.91 Total: 44.32 kcal Total: -83.66 -0.50 -84.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281266900.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.022 kcal (2) G-P(sol) polarization free energy of solvation -83.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds