Wall clock time and date at job start Tue Mar 31 2020 23:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47016 * 2 1 4 4 N 1.46895 * 109.47150 * 239.99742 * 2 1 3 5 5 C 1.46896 * 111.00306 * 84.99962 * 4 2 1 6 6 C 1.50696 * 109.47452 * 180.02562 * 5 4 2 7 7 O 1.21292 * 119.99879 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00137 * 180.02562 * 6 5 4 9 9 C 1.37105 * 119.99968 * 180.02562 * 8 6 5 10 10 H 1.08004 * 119.99700 * 359.71718 * 9 8 6 11 11 C 1.38942 * 119.99884 * 179.97438 * 9 8 6 12 12 N 1.31411 * 120.00042 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00016 * 179.97438 * 11 9 8 14 14 H 1.48511 * 109.47043 * 90.00180 * 13 11 9 15 15 H 1.48494 * 109.47357 * 209.99845 * 13 11 9 16 16 H 1.48494 * 109.47227 * 330.00363 * 13 11 9 17 17 C 1.53002 * 109.47011 * 119.99659 * 2 1 3 18 18 H 1.09002 * 109.51102 * 300.00146 * 17 2 1 19 19 C 1.53292 * 109.51108 * 179.89865 * 17 2 1 20 20 N 1.47171 * 108.37560 * 187.82429 * 19 17 2 21 21 C 1.34775 * 120.94695 * 230.47266 * 20 19 17 22 22 O 1.21285 * 119.99546 * 359.97438 * 21 20 19 23 23 C 1.50698 * 120.00508 * 179.97438 * 21 20 19 24 24 C 1.53776 * 113.61622 * 279.14236 * 23 21 20 25 25 C 1.53955 * 87.01916 * 220.04603 * 24 23 21 26 26 C 1.53775 * 113.61550 * 181.52918 * 23 21 20 27 27 C 1.47158 * 118.07545 * 50.45206 * 20 19 17 28 28 C 1.53302 * 108.38367 * 309.49970 * 27 20 19 29 29 O 1.42962 * 109.51299 * 60.09886 * 17 2 1 30 30 H 1.09006 * 109.47269 * 60.00405 * 1 2 3 31 31 H 1.09003 * 109.47689 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47232 * 300.00369 * 1 2 3 33 33 H 1.00907 * 111.00152 * 321.04487 * 4 2 1 34 34 H 1.09000 * 109.47017 * 60.00110 * 5 4 2 35 35 H 1.08996 * 109.47227 * 300.00430 * 5 4 2 36 36 H 0.96999 * 120.00047 * 359.97438 * 8 6 5 37 37 H 0.97005 * 120.00019 * 180.02562 * 12 11 9 38 38 H 1.08996 * 109.68508 * 307.49376 * 19 17 2 39 39 H 1.09005 * 109.68353 * 68.05343 * 19 17 2 40 40 H 1.08999 * 112.84615 * 50.33627 * 23 21 20 41 41 H 1.09000 * 113.61629 * 334.56578 * 24 23 21 42 42 H 1.09004 * 113.61533 * 105.46597 * 24 23 21 43 43 H 1.09000 * 113.53459 * 270.80871 * 25 24 23 44 44 H 1.08997 * 113.74495 * 139.94741 * 25 24 23 45 45 H 1.09003 * 113.61654 * 254.52952 * 26 23 21 46 46 H 1.08998 * 113.61596 * 25.35493 * 26 23 21 47 47 H 1.08997 * 109.68351 * 189.77511 * 27 20 19 48 48 H 1.08999 * 109.70903 * 69.23754 * 27 20 19 49 49 H 1.08998 * 109.50931 * 292.37598 * 28 27 20 50 50 H 1.09000 * 109.50882 * 172.22278 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0824 0.2224 -2.3469 6 6 2.5873 -0.5220 -3.5559 7 8 2.8668 -1.6992 -3.4703 8 7 2.7282 0.1202 -4.7325 9 6 3.1870 -0.5573 -5.8326 10 1 3.4399 -1.6044 -5.7552 11 6 3.3318 0.1047 -7.0456 12 7 3.0285 1.3799 -7.1385 13 14 3.9576 -0.8181 -8.5443 14 1 2.8081 -1.4003 -9.2828 15 1 4.6923 0.1190 -9.4315 16 1 4.8696 -1.9067 -8.1103 17 6 2.0399 -0.7212 1.2493 18 1 1.6769 -0.2078 2.1397 19 6 3.5729 -0.7239 1.2490 20 7 4.0355 -1.5806 2.3527 21 6 4.9531 -1.1385 3.2353 22 8 5.4101 -0.0204 3.1261 23 6 5.4114 -2.0335 4.3578 24 6 4.4448 -2.0661 5.5534 25 6 5.6906 -2.0556 6.4579 26 6 6.4312 -1.3695 5.2978 27 6 3.4668 -2.9332 2.4647 28 6 1.9390 -2.8217 2.4064 29 8 1.5658 -2.0699 1.2491 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.4495 -1.4980 -1.4099 34 1 2.7588 1.0460 -2.1182 35 1 1.0871 0.6162 -2.5525 36 1 2.5043 1.0615 -4.8011 37 1 3.1292 1.8420 -7.9855 38 1 3.9391 -1.1181 0.3011 39 1 3.9419 0.2917 1.3920 40 1 5.7140 -3.0225 4.0139 41 1 3.8319 -1.1693 5.6440 42 1 3.8635 -2.9857 5.6200 43 1 6.0689 -3.0513 6.6893 44 1 5.5859 -1.4267 7.3419 45 1 7.4513 -1.7276 5.1584 46 1 6.3635 -0.2818 5.3174 47 1 3.7664 -3.3800 3.4127 48 1 3.8216 -3.5506 1.6395 49 1 1.5765 -2.3162 3.3015 50 1 1.5032 -3.8191 2.3488 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282896437.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:47 Heat of formation + Delta-G solvation = -114.908713 kcal Electronic energy + Delta-G solvation = -30269.918808 eV Core-core repulsion = 26103.859301 eV Total energy + Delta-G solvation = -4166.059507 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.72745 -40.36579 -39.87220 -38.27005 -37.40647 -35.94123 -35.70335 -33.33162 -32.81535 -30.80076 -29.39955 -27.95620 -27.30494 -26.57662 -25.76992 -24.89637 -23.61952 -21.55469 -21.10669 -21.03385 -19.92762 -19.75677 -18.60902 -17.88146 -17.54210 -17.11316 -16.86847 -16.59864 -16.35659 -16.27726 -16.08849 -15.76062 -15.55652 -15.34004 -15.06841 -14.86977 -14.34999 -14.21240 -13.96080 -13.76589 -13.52823 -13.51196 -13.38400 -13.08432 -13.02902 -12.82394 -12.74584 -12.57151 -12.44621 -12.41119 -12.13619 -12.13100 -11.88116 -11.60642 -11.50539 -11.44426 -11.31073 -11.08256 -10.67228 -10.33517 -10.01328 -9.63713 -9.20197 -8.46711 -5.95346 1.37388 1.40736 1.52764 1.53795 1.87683 2.06048 2.28696 2.78577 2.92222 3.20534 3.42416 3.51610 3.58466 3.66812 3.71631 3.89215 3.90404 3.99430 4.11099 4.17473 4.22093 4.29468 4.31518 4.40195 4.48073 4.49271 4.57188 4.61158 4.66191 4.77068 4.78124 4.84108 4.86807 4.92186 4.97611 5.02187 5.07907 5.09573 5.17352 5.31520 5.35706 5.40599 5.52364 5.89031 6.08653 6.28844 6.34772 6.44814 6.60489 7.08981 7.12745 7.56731 8.12263 8.70734 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017058 B = 0.002241 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.111968 B =12493.504103 C =13212.954356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.090 3.910 3 H 0.099 0.901 4 N -0.667 5.667 5 C 0.064 3.936 6 C 0.439 3.561 7 O -0.622 6.622 8 N -0.575 5.575 9 C -0.332 4.332 10 H 0.078 0.922 11 C -0.015 4.015 12 N -0.921 5.921 13 Si 0.993 3.007 14 H -0.269 1.269 15 H -0.271 1.271 16 H -0.274 1.274 17 C 0.107 3.893 18 H 0.074 0.926 19 C 0.088 3.912 20 N -0.613 5.613 21 C 0.515 3.485 22 O -0.590 6.590 23 C -0.139 4.139 24 C -0.115 4.115 25 C -0.128 4.128 26 C -0.130 4.130 27 C 0.070 3.930 28 C 0.046 3.954 29 O -0.382 6.382 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.348 0.652 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.396 0.604 37 H 0.277 0.723 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.135 0.865 41 H 0.072 0.928 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.125 0.875 48 H 0.070 0.930 49 H 0.067 0.933 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.098 -6.225 28.219 29.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 H 0.117 0.883 4 N -0.299 5.299 5 C -0.068 4.068 6 C 0.226 3.774 7 O -0.508 6.508 8 N -0.212 5.212 9 C -0.462 4.462 10 H 0.096 0.904 11 C -0.215 4.215 12 N -0.562 5.562 13 Si 0.817 3.183 14 H -0.195 1.195 15 H -0.196 1.196 16 H -0.199 1.199 17 C 0.048 3.952 18 H 0.092 0.908 19 C -0.035 4.035 20 N -0.346 5.346 21 C 0.305 3.695 22 O -0.471 6.471 23 C -0.159 4.159 24 C -0.153 4.153 25 C -0.165 4.165 26 C -0.168 4.168 27 C -0.052 4.052 28 C -0.031 4.031 29 O -0.301 6.301 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.168 0.832 34 H 0.119 0.881 35 H 0.085 0.915 36 H 0.230 0.770 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.152 0.848 41 H 0.091 0.909 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.143 0.857 48 H 0.089 0.911 49 H 0.085 0.915 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.108 -6.291 28.061 28.835 hybrid contribution -0.338 0.619 -1.448 1.610 sum -2.446 -5.672 26.614 27.321 Atomic orbital electron populations 1.22329 0.94999 1.02762 1.02770 1.21688 0.94485 0.97357 0.88459 0.88274 1.60110 1.58408 1.08886 1.02525 1.21573 1.01060 0.95354 0.88839 1.20885 0.83322 0.88010 0.85134 1.90492 1.56528 1.18313 1.85451 1.41943 1.58472 1.12580 1.08224 1.19652 1.42069 0.95951 0.88514 0.90402 1.26052 0.97317 0.96645 1.01442 1.69676 1.48774 1.09656 1.28070 0.84923 0.78440 0.77785 0.77155 1.19479 1.19571 1.19891 1.22348 0.91332 0.83934 0.97563 0.90841 1.22124 0.95690 0.95900 0.89750 1.48343 1.41746 1.16363 1.28143 1.21360 0.77743 0.87577 0.82798 1.90657 1.57810 1.23156 1.75492 1.22968 1.00769 1.00090 0.92108 1.22880 0.96437 1.03608 0.92379 1.22843 0.95205 1.02049 0.96423 1.22833 0.98255 1.00150 0.95538 1.22690 0.95303 0.82350 1.04841 1.23165 0.93012 0.98366 0.88596 1.88003 1.75330 1.23455 1.43277 0.92544 0.92107 0.90453 0.83249 0.88109 0.91457 0.77015 0.91333 0.91336 0.90549 0.84760 0.90938 0.87819 0.87754 0.90506 0.90652 0.91360 0.85688 0.91127 0.91514 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.42 9.02 71.98 0.65 -2.77 16 2 C 0.09 2.15 2.43 44.92 0.11 2.26 16 3 H 0.10 2.18 7.80 -2.39 -0.02 2.17 16 4 N -0.67 -21.38 4.86 -495.61 -2.41 -23.79 16 5 C 0.06 2.24 5.96 85.56 0.51 2.75 16 6 C 0.44 21.35 7.82 87.66 0.69 22.03 16 7 O -0.62 -35.17 15.78 -3.07 -0.05 -35.22 16 8 N -0.57 -30.16 5.29 -306.99 -1.62 -31.78 16 9 C -0.33 -19.26 9.68 84.04 0.81 -18.45 16 10 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 11 C -0.02 -0.82 5.50 84.92 0.47 -0.35 16 12 N -0.92 -50.55 13.05 21.66 0.28 -50.27 16 13 Si 0.99 43.77 29.55 68.60 2.03 45.80 16 14 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 15 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 17 C 0.11 2.43 2.59 30.69 0.08 2.51 16 18 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 19 C 0.09 2.43 5.86 86.35 0.51 2.94 16 20 N -0.61 -14.02 3.02 -817.28 -2.47 -16.49 16 21 C 0.51 12.68 7.24 87.66 0.63 13.31 16 22 O -0.59 -20.05 15.38 -3.04 -0.05 -20.09 16 23 C -0.14 -2.08 2.73 -11.02 -0.03 -2.11 16 24 C -0.12 -1.12 7.13 31.18 0.22 -0.90 16 25 C -0.13 -1.15 8.09 31.18 0.25 -0.90 16 26 C -0.13 -2.03 7.40 31.12 0.23 -1.80 16 27 C 0.07 1.07 6.50 86.36 0.56 1.63 16 28 C 0.05 0.65 6.99 72.08 0.50 1.15 16 29 O -0.38 -8.53 9.58 -148.98 -1.43 -9.96 16 30 H 0.06 1.16 7.45 -2.38 -0.02 1.14 16 31 H 0.06 1.33 7.67 -2.39 -0.02 1.31 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.35 12.19 8.17 -89.69 -0.73 11.46 16 34 H 0.10 3.23 8.06 -2.39 -0.02 3.21 16 35 H 0.07 2.05 7.44 -2.39 -0.02 2.04 16 36 H 0.40 19.73 7.90 -92.71 -0.73 19.00 16 37 H 0.28 14.24 8.31 -92.70 -0.77 13.47 16 38 H 0.07 2.33 7.40 -2.39 -0.02 2.31 16 39 H 0.08 2.32 7.08 -2.38 -0.02 2.30 16 40 H 0.13 1.43 7.64 -2.39 -0.02 1.41 16 41 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 42 H 0.10 0.45 7.84 -2.38 -0.02 0.43 16 43 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.07 1.43 7.45 -2.39 -0.02 1.42 16 47 H 0.13 1.01 5.44 -2.39 -0.01 0.99 16 48 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -76.83 398.79 -0.02 -76.86 By element: Atomic # 1 Polarization: 44.14 SS G_CDS: -0.50 Total: 43.63 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: 6.19 Total: 21.32 kcal Atomic # 7 Polarization: -116.11 SS G_CDS: -6.22 Total: -122.33 kcal Atomic # 8 Polarization: -63.75 SS G_CDS: -1.52 Total: -65.28 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -76.83 -0.02 -76.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282896437.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.052 kcal (2) G-P(sol) polarization free energy of solvation -76.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds