Wall clock time and date at job start Tue Mar 31 2020 22:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.82759 * 2 1 4 4 C 1.54993 * 110.91098 * 236.35242 * 2 1 3 5 5 O 1.44373 * 103.49041 * 204.77660 * 4 2 1 6 6 C 1.43750 * 106.97888 * 40.05749 * 5 4 2 7 7 H 1.09000 * 109.99693 * 92.98098 * 6 5 4 8 8 C 1.50695 * 109.88256 * 214.06455 * 6 5 4 9 9 O 1.21283 * 119.99851 * 2.82480 * 8 6 5 10 10 N 1.34779 * 119.99877 * 182.83367 * 8 6 5 11 11 C 1.46501 * 119.99700 * 180.02562 * 10 8 6 12 12 H 1.08999 * 112.90646 * 336.24619 * 11 10 8 13 13 C 1.53955 * 113.53757 * 107.50328 * 11 10 8 14 14 C 1.53781 * 87.01965 * 89.18842 * 13 11 10 15 15 H 1.09002 * 113.61352 * 270.77259 * 14 13 11 16 16 C 1.52995 * 113.61767 * 139.95136 * 14 13 11 17 17 N 1.46906 * 109.46978 * 85.86230 * 16 14 13 18 18 C 1.46901 * 110.99793 * 180.02562 * 17 16 14 19 19 C 1.50701 * 109.46921 * 179.97438 * 18 17 16 20 20 O 1.21294 * 119.99849 * 0.02562 * 19 18 17 21 21 N 1.34780 * 119.99795 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99707 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99704 * 359.97438 * 22 21 19 24 24 C 1.38941 * 119.99927 * 180.02562 * 22 21 19 25 25 N 1.31413 * 120.00506 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 120.00009 * 359.97438 * 24 22 21 27 27 H 1.48494 * 109.47177 * 89.99959 * 26 24 22 28 28 H 1.48505 * 109.47036 * 210.00243 * 26 24 22 29 29 H 1.48499 * 109.46776 * 329.99732 * 26 24 22 30 30 C 1.53785 * 113.61153 * 205.00053 * 11 10 8 31 31 C 1.54104 * 107.29000 * 333.49128 * 6 5 4 32 32 H 1.08997 * 109.47634 * 296.35125 * 1 2 3 33 33 H 1.08997 * 109.47239 * 56.36093 * 1 2 3 34 34 H 1.09007 * 109.46558 * 176.35250 * 1 2 3 35 35 H 1.08998 * 110.61903 * 323.27697 * 4 2 1 36 36 H 1.08997 * 110.61999 * 86.11710 * 4 2 1 37 37 H 0.96997 * 120.00211 * 359.97438 * 10 8 6 38 38 H 1.09000 * 113.66681 * 334.66084 * 13 11 10 39 39 H 1.08998 * 113.61130 * 203.70622 * 13 11 10 40 40 H 1.08995 * 109.46859 * 325.86522 * 16 14 13 41 41 H 1.09002 * 109.47639 * 205.86190 * 16 14 13 42 42 H 1.00898 * 110.99995 * 303.95410 * 17 16 14 43 43 H 1.09002 * 109.47401 * 59.99808 * 18 17 16 44 44 H 1.09001 * 109.46874 * 299.99821 * 18 17 16 45 45 H 0.96995 * 120.00011 * 0.02562 * 21 19 18 46 46 H 0.96993 * 120.00255 * 180.02562 * 25 24 22 47 47 H 1.08998 * 113.61228 * 156.33858 * 30 11 10 48 48 H 1.09000 * 113.61355 * 25.42653 * 30 11 10 49 49 H 1.08996 * 110.48652 * 120.70362 * 31 6 5 50 50 H 1.09003 * 110.48143 * 243.21980 * 31 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0188 0.0000 4 6 2.0832 -0.8022 -1.2053 5 8 3.3941 -1.2142 -0.7625 6 6 3.2719 -1.5881 0.6202 7 1 3.0839 -2.6586 0.7017 8 6 4.5350 -1.2319 1.3610 9 8 5.4365 -0.6622 0.7834 10 7 4.6628 -1.5467 2.6652 11 6 5.8905 -1.2000 3.3855 12 1 6.7505 -1.0831 2.7262 13 6 5.7123 -0.0390 4.3807 14 6 5.3359 -1.1004 5.4279 15 1 4.2710 -1.3319 5.4515 16 6 5.9146 -0.8234 6.8168 17 7 5.0125 0.0719 7.5536 18 6 5.5375 0.3610 8.8947 19 6 4.5879 1.2805 9.6184 20 8 3.5733 1.6575 9.0710 21 7 4.8655 1.6831 10.8744 22 6 4.0013 2.5192 11.5329 23 1 3.0983 2.8555 11.0451 24 6 4.2877 2.9348 12.8275 25 7 3.4592 3.7358 13.4590 26 14 5.8500 2.3536 13.6708 27 1 6.9508 3.3088 13.3863 28 1 5.6236 2.2815 15.1368 29 1 6.2172 1.0085 13.1599 30 6 6.1651 -2.0987 4.6028 31 6 2.0824 -0.8012 1.2040 32 1 -0.3634 0.4561 0.9208 33 1 -0.3633 0.5693 -0.8555 34 1 -0.3633 -1.0257 -0.0654 35 1 1.4564 -1.6704 -1.4087 36 1 2.1557 -0.1673 -2.0882 37 1 3.9416 -2.0022 3.1272 38 1 4.8930 0.6335 4.1265 39 1 6.6392 0.4881 4.6070 40 1 6.8919 -0.3516 6.7156 41 1 6.0189 -1.7622 7.3609 42 1 4.8484 0.9238 7.0384 43 1 6.5122 0.8412 8.8077 44 1 5.6395 -0.5695 9.4533 45 1 5.6767 1.3814 11.3122 46 1 3.6594 4.0261 14.3625 47 1 7.2159 -2.1356 4.8900 48 1 5.7107 -3.0866 4.5276 49 1 1.3247 -1.4842 1.5877 50 1 2.4205 -0.1268 1.9907 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283063113.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:45 Heat of formation + Delta-G solvation = -96.269223 kcal Electronic energy + Delta-G solvation = -28779.811399 eV Core-core repulsion = 24614.560161 eV Total energy + Delta-G solvation = -4165.251238 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.95420 -39.80791 -38.52117 -38.10336 -35.33563 -34.12946 -33.91168 -33.38991 -31.66976 -30.68218 -28.59190 -26.80857 -26.08257 -25.73035 -24.35460 -23.44774 -22.07577 -21.25303 -20.91249 -19.58263 -19.27233 -18.34388 -17.98653 -16.77127 -16.50998 -16.31131 -15.84251 -15.64335 -15.43710 -15.16658 -14.82507 -14.57053 -14.46542 -14.16699 -13.98140 -13.91235 -13.47345 -13.38949 -13.10866 -12.94169 -12.73847 -12.69844 -12.47848 -12.19064 -12.14740 -11.82655 -11.78014 -11.68085 -11.31338 -11.24644 -11.18416 -11.03931 -10.69696 -10.60104 -10.48871 -10.34167 -9.98379 -9.80762 -9.58219 -9.33634 -8.59889 -8.20546 -8.13895 -6.31961 -3.83463 2.25877 2.52165 3.01835 3.05814 3.14171 3.53754 3.73438 3.93033 4.00514 4.09506 4.19289 4.24543 4.27655 4.37838 4.45233 4.61101 4.68280 4.70866 4.78023 4.91686 4.96005 5.07447 5.18753 5.20366 5.22557 5.25920 5.27680 5.38923 5.43814 5.49504 5.50397 5.52409 5.60829 5.61506 5.65443 5.73259 5.80179 5.83548 5.91843 5.92832 6.01732 6.26011 6.37461 7.10523 7.14736 7.57076 7.59005 7.89876 8.13631 8.59048 8.94087 9.41616 9.81983 10.81167 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017224 B = 0.001758 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.256430 B =15922.142432 C =17235.409045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 H 0.089 0.911 4 C 0.048 3.952 5 O -0.348 6.348 6 C 0.061 3.939 7 H 0.095 0.905 8 C 0.515 3.485 9 O -0.519 6.519 10 N -0.710 5.710 11 C 0.121 3.879 12 H 0.102 0.898 13 C -0.150 4.150 14 C -0.105 4.105 15 H 0.100 0.900 16 C 0.068 3.932 17 N -0.668 5.668 18 C 0.047 3.953 19 C 0.450 3.550 20 O -0.565 6.565 21 N -0.591 5.591 22 C -0.305 4.305 23 H 0.119 0.881 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.269 1.269 30 C -0.139 4.139 31 C -0.145 4.145 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.402 0.598 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.028 0.972 41 H 0.071 0.929 42 H 0.350 0.650 43 H 0.044 0.956 44 H 0.087 0.913 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.095 0.905 48 H 0.074 0.926 49 H 0.090 0.910 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.627 -14.738 -24.910 28.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 H 0.107 0.893 4 C -0.029 4.029 5 O -0.265 6.265 6 C 0.000 4.000 7 H 0.113 0.887 8 C 0.301 3.699 9 O -0.393 6.393 10 N -0.363 5.363 11 C 0.015 3.985 12 H 0.120 0.880 13 C -0.189 4.189 14 C -0.124 4.124 15 H 0.118 0.882 16 C -0.061 4.061 17 N -0.301 5.301 18 C -0.085 4.085 19 C 0.235 3.765 20 O -0.447 6.447 21 N -0.230 5.230 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.521 5.521 26 Si 0.707 3.293 27 H -0.197 1.197 28 H -0.202 1.202 29 H -0.195 1.195 30 C -0.177 4.177 31 C -0.183 4.183 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.237 0.763 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.047 0.953 41 H 0.090 0.910 42 H 0.169 0.831 43 H 0.061 0.939 44 H 0.105 0.895 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.113 0.887 48 H 0.093 0.907 49 H 0.108 0.892 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.325 -14.443 -25.437 29.281 hybrid contribution 1.403 0.022 1.181 1.834 sum 2.729 -14.421 -24.256 28.351 Atomic orbital electron populations 1.21734 0.93336 1.02301 1.02675 1.22742 0.96944 1.00576 0.94209 0.89264 1.23745 0.83782 0.97792 0.97542 1.89007 1.29271 1.86179 1.22065 1.22610 0.93184 1.00117 0.84116 0.88740 1.20483 0.88675 0.78901 0.81889 1.90730 1.41159 1.40042 1.67352 1.45587 1.19367 1.61246 1.10072 1.21861 0.87746 0.96242 0.92617 0.88035 1.23557 1.02623 0.96860 0.95869 1.22624 1.00601 0.96132 0.93055 0.88200 1.21956 0.93400 0.97446 0.93343 1.60083 1.46517 1.20952 1.02516 1.21710 0.95864 0.99586 0.91387 1.19733 0.88500 0.85345 0.82881 1.90561 1.27977 1.59260 1.66901 1.42213 1.22369 1.44917 1.13546 1.19431 1.04595 1.22289 0.97061 0.86297 1.25043 0.97911 0.96886 0.96366 1.69619 1.36072 1.33294 1.13164 0.86664 0.83433 0.79043 0.80203 1.19667 1.20158 1.19481 1.23339 1.01548 0.98109 0.94735 1.23052 0.96489 0.99635 0.99170 0.91768 0.92037 0.92212 0.91680 0.88469 0.76309 0.90830 0.89234 0.95345 0.91014 0.83052 0.93852 0.89528 0.79692 0.91614 0.88653 0.90732 0.89188 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.65 9.19 37.16 0.34 -0.31 16 2 C -0.13 -0.78 3.72 -88.61 -0.33 -1.11 16 3 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 4 C 0.05 0.32 7.17 38.21 0.27 0.60 16 5 O -0.35 -3.66 10.74 -54.81 -0.59 -4.25 16 6 C 0.06 0.49 3.84 -27.31 -0.10 0.39 16 7 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 8 C 0.52 5.42 6.95 -10.99 -0.08 5.34 16 9 O -0.52 -7.90 16.13 -14.02 -0.23 -8.13 16 10 N -0.71 -5.58 5.23 -52.93 -0.28 -5.85 16 11 C 0.12 1.03 4.33 -67.02 -0.29 0.74 16 12 H 0.10 1.02 7.47 -51.93 -0.39 0.64 16 13 C -0.15 -1.38 7.44 -25.83 -0.19 -1.57 16 14 C -0.11 -0.92 3.77 -89.81 -0.34 -1.26 16 15 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 16 C 0.07 0.73 5.51 -3.82 -0.02 0.70 16 17 N -0.67 -9.97 6.13 -115.05 -0.70 -10.67 16 18 C 0.05 0.77 6.17 -4.97 -0.03 0.74 16 19 C 0.45 10.17 7.82 -10.98 -0.09 10.09 16 20 O -0.57 -15.14 15.78 5.55 0.09 -15.05 16 21 N -0.59 -14.05 5.09 -10.96 -0.06 -14.11 16 22 C -0.31 -8.63 10.16 -14.94 -0.15 -8.78 16 23 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 24 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 25 N -0.88 -25.73 13.96 55.50 0.77 -24.95 16 26 Si 0.88 19.30 27.74 -169.99 -4.71 14.58 16 27 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 28 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 29 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 30 C -0.14 -0.96 7.39 -25.91 -0.19 -1.15 16 31 C -0.15 -0.89 6.20 -25.20 -0.16 -1.05 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.23 8.09 -51.93 -0.42 -0.19 16 35 H 0.07 0.33 8.01 -51.93 -0.42 -0.09 16 36 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.40 2.15 8.70 -40.82 -0.36 1.80 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.81 7.92 -51.93 -0.41 0.40 16 40 H 0.03 0.29 7.87 -51.93 -0.41 -0.12 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.35 5.51 8.43 -39.29 -0.33 5.18 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.37 7.71 5.76 -40.82 -0.24 7.48 16 46 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.10 0.60 8.10 -51.93 -0.42 0.18 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.09 0.37 7.86 -51.93 -0.41 -0.04 16 50 H 0.09 0.59 7.69 -51.93 -0.40 0.19 16 LS Contribution 407.84 15.07 6.15 6.15 Total: -1.00 -36.28 407.84 -9.41 -45.69 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -8.40 Total: 12.21 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -1.45 Total: 4.39 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.26 Total: -55.59 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.73 Total: -27.42 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.71 Total: 14.58 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.28 -9.41 -45.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283063113.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.580 kcal (2) G-P(sol) polarization free energy of solvation -36.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds