Wall clock time and date at job start Tue Mar 31 2020 22:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.82759 * 2 1 4 4 C 1.54993 * 110.91098 * 236.35242 * 2 1 3 5 5 O 1.44373 * 103.49041 * 204.77660 * 4 2 1 6 6 C 1.43750 * 106.97888 * 40.05749 * 5 4 2 7 7 H 1.09000 * 109.99693 * 92.98098 * 6 5 4 8 8 C 1.50695 * 109.88256 * 214.06455 * 6 5 4 9 9 O 1.21283 * 119.99851 * 2.82480 * 8 6 5 10 10 N 1.34779 * 119.99877 * 182.83367 * 8 6 5 11 11 C 1.46501 * 119.99700 * 180.02562 * 10 8 6 12 12 H 1.08999 * 112.90646 * 336.24619 * 11 10 8 13 13 C 1.53955 * 113.53757 * 107.50328 * 11 10 8 14 14 C 1.53781 * 87.01965 * 89.18842 * 13 11 10 15 15 H 1.09002 * 113.61352 * 270.77259 * 14 13 11 16 16 C 1.52995 * 113.61767 * 139.95136 * 14 13 11 17 17 N 1.46906 * 109.46978 * 85.86230 * 16 14 13 18 18 C 1.46901 * 110.99793 * 180.02562 * 17 16 14 19 19 C 1.50701 * 109.46921 * 179.97438 * 18 17 16 20 20 O 1.21294 * 119.99849 * 0.02562 * 19 18 17 21 21 N 1.34780 * 119.99795 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99707 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99704 * 359.97438 * 22 21 19 24 24 C 1.38941 * 119.99927 * 180.02562 * 22 21 19 25 25 N 1.31413 * 120.00506 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 120.00009 * 359.97438 * 24 22 21 27 27 H 1.48494 * 109.47177 * 89.99959 * 26 24 22 28 28 H 1.48505 * 109.47036 * 210.00243 * 26 24 22 29 29 H 1.48499 * 109.46776 * 329.99732 * 26 24 22 30 30 C 1.53785 * 113.61153 * 205.00053 * 11 10 8 31 31 C 1.54104 * 107.29000 * 333.49128 * 6 5 4 32 32 H 1.08997 * 109.47634 * 296.35125 * 1 2 3 33 33 H 1.08997 * 109.47239 * 56.36093 * 1 2 3 34 34 H 1.09007 * 109.46558 * 176.35250 * 1 2 3 35 35 H 1.08998 * 110.61903 * 323.27697 * 4 2 1 36 36 H 1.08997 * 110.61999 * 86.11710 * 4 2 1 37 37 H 0.96997 * 120.00211 * 359.97438 * 10 8 6 38 38 H 1.09000 * 113.66681 * 334.66084 * 13 11 10 39 39 H 1.08998 * 113.61130 * 203.70622 * 13 11 10 40 40 H 1.08995 * 109.46859 * 325.86522 * 16 14 13 41 41 H 1.09002 * 109.47639 * 205.86190 * 16 14 13 42 42 H 1.00898 * 110.99995 * 303.95410 * 17 16 14 43 43 H 1.09002 * 109.47401 * 59.99808 * 18 17 16 44 44 H 1.09001 * 109.46874 * 299.99821 * 18 17 16 45 45 H 0.96995 * 120.00011 * 0.02562 * 21 19 18 46 46 H 0.96993 * 120.00255 * 180.02562 * 25 24 22 47 47 H 1.08998 * 113.61228 * 156.33858 * 30 11 10 48 48 H 1.09000 * 113.61355 * 25.42653 * 30 11 10 49 49 H 1.08996 * 110.48652 * 120.70362 * 31 6 5 50 50 H 1.09003 * 110.48143 * 243.21980 * 31 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0188 0.0000 4 6 2.0832 -0.8022 -1.2053 5 8 3.3941 -1.2142 -0.7625 6 6 3.2719 -1.5881 0.6202 7 1 3.0839 -2.6586 0.7017 8 6 4.5350 -1.2319 1.3610 9 8 5.4365 -0.6622 0.7834 10 7 4.6628 -1.5467 2.6652 11 6 5.8905 -1.2000 3.3855 12 1 6.7505 -1.0831 2.7262 13 6 5.7123 -0.0390 4.3807 14 6 5.3359 -1.1004 5.4279 15 1 4.2710 -1.3319 5.4515 16 6 5.9146 -0.8234 6.8168 17 7 5.0125 0.0719 7.5536 18 6 5.5375 0.3610 8.8947 19 6 4.5879 1.2805 9.6184 20 8 3.5733 1.6575 9.0710 21 7 4.8655 1.6831 10.8744 22 6 4.0013 2.5192 11.5329 23 1 3.0983 2.8555 11.0451 24 6 4.2877 2.9348 12.8275 25 7 3.4592 3.7358 13.4590 26 14 5.8500 2.3536 13.6708 27 1 6.9508 3.3088 13.3863 28 1 5.6236 2.2815 15.1368 29 1 6.2172 1.0085 13.1599 30 6 6.1651 -2.0987 4.6028 31 6 2.0824 -0.8012 1.2040 32 1 -0.3634 0.4561 0.9208 33 1 -0.3633 0.5693 -0.8555 34 1 -0.3633 -1.0257 -0.0654 35 1 1.4564 -1.6704 -1.4087 36 1 2.1557 -0.1673 -2.0882 37 1 3.9416 -2.0022 3.1272 38 1 4.8930 0.6335 4.1265 39 1 6.6392 0.4881 4.6070 40 1 6.8919 -0.3516 6.7156 41 1 6.0189 -1.7622 7.3609 42 1 4.8484 0.9238 7.0384 43 1 6.5122 0.8412 8.8077 44 1 5.6395 -0.5695 9.4533 45 1 5.6767 1.3814 11.3122 46 1 3.6594 4.0261 14.3625 47 1 7.2159 -2.1356 4.8900 48 1 5.7107 -3.0866 4.5276 49 1 1.3247 -1.4842 1.5877 50 1 2.4205 -0.1268 1.9907 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283063113.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:45 Heat of formation + Delta-G solvation = -125.163874 kcal Electronic energy + Delta-G solvation = -28781.064365 eV Core-core repulsion = 24614.560161 eV Total energy + Delta-G solvation = -4166.504204 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.66957 -40.53509 -40.18638 -38.99745 -36.55763 -35.82159 -34.69715 -34.23234 -33.73708 -31.31862 -29.73812 -27.38481 -27.19275 -26.63412 -25.40371 -24.58811 -22.91212 -21.87338 -21.50883 -21.30232 -20.41331 -20.00679 -18.69536 -17.84878 -17.44273 -17.14085 -17.10851 -16.67906 -16.46659 -16.11725 -15.98024 -15.61988 -15.43014 -15.03578 -15.02440 -14.95166 -14.70120 -14.52100 -14.20383 -13.98670 -13.82320 -13.68598 -13.36559 -13.14091 -13.12110 -12.88003 -12.75197 -12.56406 -12.41395 -12.32388 -11.98471 -11.86473 -11.74572 -11.72213 -11.51521 -11.44039 -11.14162 -11.07649 -10.55371 -10.42739 -10.25096 -10.08750 -9.29310 -8.41380 -6.02470 1.30547 1.35814 1.44995 1.46862 1.86202 1.95849 2.23184 2.74300 2.96810 3.15127 3.38701 3.39475 3.55729 3.64312 3.76129 3.78460 3.84481 3.92283 3.98427 4.18245 4.19543 4.28399 4.43266 4.50204 4.50615 4.53637 4.63849 4.68917 4.74283 4.77300 4.79549 4.82368 4.86557 4.87818 4.92229 5.05880 5.08376 5.19758 5.20131 5.28836 5.33410 5.52724 5.62443 5.75643 5.91468 6.09566 6.41563 6.48506 6.59910 6.87978 7.16641 7.39791 7.96498 8.76246 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017224 B = 0.001758 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.256430 B =15922.142432 C =17235.409045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 H 0.069 0.931 4 C 0.045 3.955 5 O -0.385 6.385 6 C 0.061 3.939 7 H 0.125 0.875 8 C 0.510 3.490 9 O -0.576 6.576 10 N -0.694 5.694 11 C 0.116 3.884 12 H 0.084 0.916 13 C -0.153 4.153 14 C -0.100 4.100 15 H 0.095 0.905 16 C 0.070 3.930 17 N -0.687 5.687 18 C 0.061 3.939 19 C 0.447 3.553 20 O -0.615 6.615 21 N -0.591 5.591 22 C -0.329 4.329 23 H 0.055 0.945 24 C -0.016 4.016 25 N -0.935 5.935 26 Si 0.966 3.034 27 H -0.258 1.258 28 H -0.275 1.275 29 H -0.230 1.230 30 C -0.117 4.117 31 C -0.140 4.140 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.417 0.583 38 H 0.054 0.946 39 H 0.091 0.909 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.341 0.659 43 H 0.075 0.925 44 H 0.115 0.885 45 H 0.390 0.610 46 H 0.279 0.721 47 H 0.109 0.891 48 H 0.091 0.909 49 H 0.118 0.882 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.561 -17.888 -24.416 30.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.146 4.146 3 H 0.088 0.912 4 C -0.031 4.031 5 O -0.304 6.304 6 C 0.000 4.000 7 H 0.142 0.858 8 C 0.297 3.703 9 O -0.454 6.454 10 N -0.347 5.347 11 C 0.010 3.990 12 H 0.102 0.898 13 C -0.192 4.192 14 C -0.119 4.119 15 H 0.113 0.887 16 C -0.059 4.059 17 N -0.319 5.319 18 C -0.071 4.071 19 C 0.235 3.765 20 O -0.500 6.500 21 N -0.233 5.233 22 C -0.459 4.459 23 H 0.073 0.927 24 C -0.215 4.215 25 N -0.575 5.575 26 Si 0.786 3.214 27 H -0.182 1.182 28 H -0.200 1.200 29 H -0.153 1.153 30 C -0.156 4.156 31 C -0.178 4.178 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.254 0.746 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.159 0.841 43 H 0.093 0.907 44 H 0.133 0.867 45 H 0.226 0.774 46 H 0.089 0.911 47 H 0.127 0.873 48 H 0.110 0.890 49 H 0.136 0.864 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.248 -17.641 -24.935 30.716 hybrid contribution 0.687 1.067 0.936 1.577 sum 3.935 -16.575 -23.998 29.430 Atomic orbital electron populations 1.21704 0.91779 1.03291 1.02748 1.22724 0.98131 0.99510 0.94212 0.91211 1.23931 0.82779 0.98764 0.97653 1.88968 1.31477 1.86580 1.23326 1.22801 0.92212 1.01887 0.83079 0.85773 1.21081 0.88913 0.77884 0.82433 1.90698 1.43243 1.42832 1.68666 1.45498 1.19611 1.60244 1.09393 1.21869 0.87460 0.96931 0.92746 0.89784 1.23571 1.02064 0.96938 0.96604 1.22550 1.00650 0.96479 0.92180 0.88676 1.22069 0.93186 0.97016 0.93597 1.60114 1.48360 1.21044 1.02341 1.21644 0.94776 0.99130 0.91575 1.21066 0.88575 0.84595 0.82268 1.90539 1.30594 1.60907 1.67943 1.42043 1.22458 1.44708 1.14086 1.19009 1.04128 1.24614 0.98103 0.92734 1.26139 1.02568 0.96292 0.96499 1.69804 1.39008 1.34799 1.13910 0.85349 0.77310 0.80492 0.78267 1.18220 1.20031 1.15322 1.23258 1.02123 0.98021 0.92157 1.23078 0.96357 0.99743 0.98646 0.92049 0.91609 0.90761 0.89450 0.88324 0.74573 0.92713 0.89072 0.94015 0.89618 0.84098 0.90748 0.86711 0.77443 0.91148 0.87277 0.89020 0.86355 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.19 71.98 0.66 -0.40 16 2 C -0.13 -1.51 3.72 -9.49 -0.04 -1.55 16 3 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 4 C 0.04 0.57 7.17 72.66 0.52 1.09 16 5 O -0.38 -8.13 10.74 -130.26 -1.40 -9.53 16 6 C 0.06 0.93 3.84 30.22 0.12 1.05 16 7 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 8 C 0.51 10.82 6.95 87.66 0.61 11.43 16 9 O -0.58 -18.42 16.13 15.68 0.25 -18.17 16 10 N -0.69 -10.35 5.23 -439.75 -2.30 -12.65 16 11 C 0.12 1.87 4.33 45.58 0.20 2.06 16 12 H 0.08 1.71 7.47 -2.39 -0.02 1.69 16 13 C -0.15 -2.71 7.44 31.18 0.23 -2.47 16 14 C -0.10 -1.52 3.77 -10.27 -0.04 -1.56 16 15 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 16 C 0.07 1.25 5.51 86.30 0.48 1.73 16 17 N -0.69 -19.03 6.13 -517.92 -3.17 -22.20 16 18 C 0.06 1.80 6.17 85.56 0.53 2.33 16 19 C 0.45 20.01 7.82 87.66 0.69 20.70 16 20 O -0.62 -34.05 15.78 -3.07 -0.05 -34.10 16 21 N -0.59 -27.70 5.09 -306.98 -1.56 -29.27 16 22 C -0.33 -19.30 10.16 84.04 0.85 -18.44 16 23 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 24 C -0.02 -0.91 5.50 84.92 0.47 -0.45 16 25 N -0.93 -56.33 13.96 21.66 0.30 -56.03 16 26 Si 0.97 38.46 27.74 68.60 1.90 40.36 16 27 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 28 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 29 H -0.23 -7.64 6.52 99.48 0.65 -6.99 16 30 C -0.12 -1.27 7.39 31.12 0.23 -1.04 16 31 C -0.14 -1.57 6.20 31.58 0.20 -1.37 16 32 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.07 0.37 8.09 -2.38 -0.02 0.35 16 35 H 0.09 0.71 8.01 -2.39 -0.02 0.69 16 36 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.42 3.71 8.70 -92.71 -0.81 2.90 16 38 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.57 7.92 -2.39 -0.02 1.55 16 40 H 0.04 0.67 7.87 -2.39 -0.02 0.65 16 41 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.34 10.50 8.43 -89.70 -0.76 9.74 16 43 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 45 H 0.39 15.00 5.76 -92.71 -0.53 14.47 16 46 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 47 H 0.11 0.96 8.10 -2.39 -0.02 0.94 16 48 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.12 0.65 7.86 -2.39 -0.02 0.63 16 50 H 0.07 1.00 7.69 -2.39 -0.02 0.99 16 Total: -1.00 -86.64 407.84 -1.52 -88.15 By element: Atomic # 1 Polarization: 41.52 SS G_CDS: -1.19 Total: 40.33 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 5.70 Total: 13.09 kcal Atomic # 7 Polarization: -113.41 SS G_CDS: -6.74 Total: -120.14 kcal Atomic # 8 Polarization: -60.60 SS G_CDS: -1.19 Total: -61.80 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 1.90 Total: 40.36 kcal Total: -86.64 -1.52 -88.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283063113.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.010 kcal (2) G-P(sol) polarization free energy of solvation -86.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds