Wall clock time and date at job start Tue Mar 31 2020 22:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47250 * 2 1 4 4 C 1.52997 * 109.47049 * 120.00119 * 2 1 3 5 5 C 1.53006 * 109.47127 * 185.00237 * 4 2 1 6 6 C 1.52997 * 109.47127 * 180.02562 * 5 4 2 7 7 N 1.46896 * 109.47114 * 179.97438 * 6 5 4 8 8 C 1.46904 * 111.00095 * 179.97438 * 7 6 5 9 9 C 1.50704 * 109.47145 * 179.97438 * 8 7 6 10 10 O 1.21290 * 119.99700 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99686 * 180.02562 * 9 8 7 12 12 C 1.37102 * 119.99398 * 180.02562 * 11 9 8 13 13 H 1.08001 * 120.00437 * 359.97438 * 12 11 9 14 14 C 1.38952 * 119.99331 * 179.97438 * 12 11 9 15 15 N 1.31409 * 120.00414 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99692 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47251 * 59.99968 * 16 14 12 18 18 H 1.48496 * 109.47474 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47164 * 300.00384 * 16 14 12 20 20 N 1.46500 * 109.47073 * 240.00103 * 2 1 3 21 21 C 1.34772 * 120.00410 * 84.99921 * 20 2 1 22 22 O 1.21285 * 119.99812 * 0.02562 * 21 20 2 23 23 C 1.50698 * 120.00243 * 179.97438 * 21 20 2 24 24 C 1.53003 * 119.80683 * 250.98285 * 23 21 20 25 25 C 1.53006 * 60.65508 * 247.68952 * 24 23 21 26 26 H 1.08998 * 120.24602 * 112.13537 * 25 24 23 27 27 C 1.54480 * 118.06841 * 269.59587 * 25 24 23 28 28 O 1.44423 * 104.80369 * 86.82235 * 27 25 24 29 29 C 1.43865 * 105.57047 * 319.94799 * 28 27 25 30 30 H 1.08998 * 109.47250 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47252 * 300.00076 * 1 2 3 32 32 H 1.09000 * 109.46959 * 60.00033 * 1 2 3 33 33 H 1.09001 * 109.47502 * 65.00394 * 4 2 1 34 34 H 1.09001 * 109.47289 * 305.00191 * 4 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 5 4 2 36 36 H 1.08993 * 109.46955 * 60.00011 * 5 4 2 37 37 H 1.09001 * 109.47289 * 299.99953 * 6 5 4 38 38 H 1.09004 * 109.47261 * 59.99697 * 6 5 4 39 39 H 1.00899 * 111.00115 * 56.04983 * 7 6 5 40 40 H 1.08996 * 109.47212 * 300.00609 * 8 7 6 41 41 H 1.09001 * 109.46635 * 60.00758 * 8 7 6 42 42 H 0.97000 * 120.00516 * 0.02562 * 11 9 8 43 43 H 0.97000 * 120.00154 * 180.02562 * 15 14 12 44 44 H 0.97000 * 119.99922 * 264.99681 * 20 2 1 45 45 H 1.08998 * 117.43273 * 355.36458 * 24 23 21 46 46 H 1.08995 * 117.43247 * 140.01611 * 24 23 21 47 47 H 1.08994 * 110.37260 * 205.65692 * 27 25 24 48 48 H 1.09005 * 110.36697 * 327.99164 * 27 25 24 49 49 H 1.09005 * 109.55631 * 281.17162 * 29 28 27 50 50 H 1.09000 * 110.92450 * 159.01671 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3137 6 6 4.0749 -1.3351 2.5626 7 7 5.5389 -1.2319 2.6242 8 6 6.0653 -1.9147 3.8136 9 6 7.5667 -1.7884 3.8422 10 8 8.1417 -1.1881 2.9589 11 7 8.2705 -2.3424 4.8493 12 6 9.6364 -2.2269 4.8756 13 1 10.1484 -1.6924 4.0891 14 6 10.3619 -2.7976 5.9142 15 7 9.7390 -3.4484 6.8709 16 14 12.2230 -2.6410 5.9496 17 1 12.5981 -1.2049 5.9967 18 1 12.7551 -3.3317 7.1516 19 1 12.7954 -3.2622 4.7283 20 7 2.0183 -0.6906 -1.1962 21 6 2.1471 -0.0183 -2.3571 22 8 1.8591 1.1586 -2.4115 23 6 2.6499 -0.7286 -3.5874 24 6 4.0468 -0.4165 -4.1282 25 6 2.8184 -0.0115 -4.9457 26 1 2.5737 1.0416 -5.0839 27 6 2.2647 -1.0219 -5.9748 28 8 1.3574 -1.8558 -5.2218 29 6 2.0013 -2.0815 -3.9552 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.7517 -1.7716 1.2056 34 1 1.6053 -0.2618 2.1370 35 1 3.9995 -1.0728 0.4260 36 1 3.8532 0.4369 1.3574 37 1 3.6403 -0.8760 3.4506 38 1 3.7865 -2.3854 2.5185 39 1 5.8348 -0.2675 2.6008 40 1 5.6447 -1.4591 4.7100 41 1 5.7904 -2.9689 3.7787 42 1 7.8107 -2.8227 5.5556 43 1 10.2455 -3.8465 7.5961 44 1 2.2491 -1.6317 -1.1526 45 1 4.6087 0.3788 -3.6387 46 1 4.6412 -1.2528 -4.4960 47 1 1.7305 -0.5004 -6.7689 48 1 3.0743 -1.6214 -6.3912 49 1 2.7654 -2.8508 -4.0663 50 1 1.2755 -2.3731 -3.1960 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283179310.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:09 Heat of formation + Delta-G solvation = -96.437383 kcal Electronic energy + Delta-G solvation = -28708.277651 eV Core-core repulsion = 24543.019121 eV Total energy + Delta-G solvation = -4165.258530 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.29509 -39.41664 -38.32425 -37.11775 -35.56815 -35.00693 -33.89916 -32.63433 -31.25324 -30.72056 -29.16607 -27.34397 -25.91718 -25.20797 -24.19824 -23.32339 -21.70078 -21.46876 -21.00704 -20.10870 -19.21429 -17.94484 -17.88544 -16.83045 -16.28202 -16.18212 -15.93232 -15.67063 -15.25112 -15.02432 -14.74949 -14.61013 -14.47905 -14.23716 -13.94285 -13.69067 -13.61868 -13.32465 -13.21393 -13.04987 -12.76006 -12.47455 -12.37769 -12.02779 -11.73210 -11.67787 -11.57433 -11.46165 -11.35494 -11.19969 -11.05704 -10.95366 -10.78238 -10.73108 -10.44962 -10.23499 -10.21985 -9.92665 -9.50840 -9.40125 -8.47016 -8.06390 -7.96627 -6.42397 -3.83310 2.15975 2.69715 2.99399 3.19522 3.25159 3.29626 3.50388 3.89033 3.90170 3.99554 4.03379 4.21218 4.29018 4.49707 4.52135 4.56511 4.73921 4.81743 4.83436 5.01502 5.11006 5.14405 5.14807 5.19018 5.22633 5.23400 5.25698 5.31231 5.36920 5.39113 5.49448 5.56643 5.63481 5.64911 5.73163 5.79265 5.89850 5.97498 6.03859 6.15769 6.19578 6.22940 6.27396 7.16798 7.22638 7.54224 7.65787 7.90314 8.05463 8.60652 9.17022 9.53552 10.05153 10.75249 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015173 B = 0.001733 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.928477 B =16156.532940 C =17375.078588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.089 0.911 4 C -0.125 4.125 5 C -0.117 4.117 6 C 0.059 3.941 7 N -0.671 5.671 8 C 0.051 3.949 9 C 0.440 3.560 10 O -0.584 6.584 11 N -0.564 5.564 12 C -0.300 4.300 13 H 0.102 0.898 14 C 0.022 3.978 15 N -0.902 5.902 16 Si 0.931 3.069 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.273 1.273 20 N -0.716 5.716 21 C 0.564 3.436 22 O -0.537 6.537 23 C -0.214 4.214 24 C -0.104 4.104 25 C -0.159 4.159 26 H 0.132 0.868 27 C 0.072 3.928 28 O -0.369 6.369 29 C 0.087 3.913 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.025 0.975 38 H 0.069 0.931 39 H 0.348 0.652 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.402 0.598 45 H 0.112 0.888 46 H 0.108 0.892 47 H 0.101 0.899 48 H 0.069 0.931 49 H 0.072 0.928 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.116 2.141 -17.768 26.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.107 0.893 4 C -0.164 4.164 5 C -0.155 4.155 6 C -0.071 4.071 7 N -0.303 5.303 8 C -0.082 4.082 9 C 0.226 3.774 10 O -0.468 6.468 11 N -0.200 5.200 12 C -0.430 4.430 13 H 0.120 0.880 14 C -0.180 4.180 15 N -0.543 5.543 16 Si 0.758 3.242 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.199 1.199 20 N -0.368 5.368 21 C 0.350 3.650 22 O -0.413 6.413 23 C -0.217 4.217 24 C -0.141 4.141 25 C -0.177 4.177 26 H 0.150 0.850 27 C -0.004 4.004 28 O -0.287 6.287 29 C 0.010 3.990 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.088 0.912 39 H 0.168 0.832 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.236 0.764 45 H 0.131 0.869 46 H 0.127 0.873 47 H 0.119 0.881 48 H 0.087 0.913 49 H 0.090 0.910 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.977 2.674 -18.683 27.483 hybrid contribution 0.657 -0.035 1.537 1.672 sum -19.320 2.639 -17.146 25.965 Atomic orbital electron populations 1.22181 0.95174 1.02204 1.02635 1.21030 0.93870 0.97712 0.83613 0.89286 1.21880 0.96338 1.01169 0.96992 1.21560 0.93944 1.01063 0.98953 1.21972 0.88304 1.00481 0.96299 1.60083 1.08040 1.21450 1.40711 1.21668 0.95005 1.00095 0.91436 1.19828 0.88128 0.84991 0.84492 1.90519 1.71173 1.46336 1.38759 1.41863 1.07403 1.48451 1.22326 1.19659 0.81541 1.32905 1.08864 0.87980 1.25267 1.00719 0.96551 0.95426 1.69602 1.36804 1.35807 1.12128 0.85910 0.82096 0.78569 0.77592 1.19918 1.20977 1.19877 1.45996 1.67230 1.14203 1.09352 1.19009 0.76692 0.86285 0.83011 1.90711 1.49909 1.15856 1.84860 1.23347 1.03735 0.99018 0.95645 1.23194 0.88651 1.03371 0.98892 1.24362 1.02192 1.01317 0.89869 0.85026 1.23011 0.93214 0.90558 0.93653 1.89082 1.43059 1.70064 1.26525 1.22720 0.96877 0.92682 0.86714 0.92374 0.91444 0.92166 0.91103 0.90191 0.90847 0.91910 0.95663 0.91231 0.83242 0.93953 0.89677 0.77457 0.91822 0.76374 0.86937 0.87334 0.88076 0.91326 0.91008 0.88364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.48 37.16 0.35 -0.86 16 2 C 0.14 1.15 2.57 -67.93 -0.17 0.97 16 3 H 0.09 0.91 7.58 -51.93 -0.39 0.51 16 4 C -0.13 -0.89 4.75 -26.73 -0.13 -1.01 16 5 C -0.12 -1.13 5.36 -26.73 -0.14 -1.27 16 6 C 0.06 0.68 5.68 -3.83 -0.02 0.66 16 7 N -0.67 -10.73 6.13 -115.06 -0.70 -11.43 16 8 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 9 C 0.44 10.45 7.82 -10.98 -0.09 10.36 16 10 O -0.58 -15.96 15.78 5.55 0.09 -15.88 16 11 N -0.56 -14.34 5.29 -10.96 -0.06 -14.39 16 12 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 13 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 14 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 15 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16 16 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 N -0.72 -5.74 4.42 -53.81 -0.24 -5.98 16 21 C 0.56 5.87 7.39 -10.99 -0.08 5.79 16 22 O -0.54 -7.61 16.51 5.55 0.09 -7.52 16 23 C -0.21 -1.77 2.84 -154.09 -0.44 -2.21 16 24 C -0.10 -0.73 9.89 -26.73 -0.26 -0.99 16 25 C -0.16 -1.22 6.90 -89.04 -0.61 -1.84 16 26 H 0.13 1.10 8.14 -51.93 -0.42 0.68 16 27 C 0.07 0.48 7.45 37.93 0.28 0.76 16 28 O -0.37 -3.35 11.62 -35.23 -0.41 -3.76 16 29 C 0.09 0.62 7.09 37.93 0.27 0.89 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.35 5.83 8.43 -39.29 -0.33 5.50 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 43 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.40 2.40 8.40 -40.82 -0.34 2.05 16 45 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.10 0.61 7.88 -51.93 -0.41 0.20 16 LS Contribution 415.92 15.07 6.27 6.27 Total: -1.00 -34.45 415.92 -9.06 -43.51 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -8.48 Total: 12.86 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -1.32 Total: 4.07 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.28 Total: -55.57 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.23 Total: -27.15 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.45 -9.06 -43.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283179310.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.930 kcal (2) G-P(sol) polarization free energy of solvation -34.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds