Wall clock time and date at job start Tue Mar 31 2020 22:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47867 * 2 1 4 4 C 1.53276 * 109.46635 * 240.00647 * 2 1 3 5 5 C 1.53177 * 109.06087 * 182.44355 * 4 2 1 6 6 H 1.09007 * 109.54263 * 176.85483 * 5 4 2 7 7 C 1.50701 * 109.54536 * 297.02703 * 5 4 2 8 8 O 1.21284 * 119.99704 * 359.82689 * 7 5 4 9 9 N 1.34774 * 120.00125 * 179.82329 * 7 5 4 10 10 C 1.46505 * 119.99857 * 180.02562 * 9 7 5 11 11 H 1.09003 * 112.84774 * 23.80344 * 10 9 7 12 12 C 1.53781 * 113.61488 * 154.99879 * 10 9 7 13 13 C 1.53781 * 87.08070 * 140.06428 * 12 10 9 14 14 H 1.09002 * 113.61445 * 89.11830 * 13 12 10 15 15 N 1.46900 * 113.61428 * 219.93557 * 13 12 10 16 16 C 1.46895 * 110.99924 * 203.46824 * 15 13 12 17 17 C 1.50700 * 109.47106 * 180.02562 * 16 15 13 18 18 O 1.21294 * 120.00101 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00188 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00693 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99366 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00595 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99886 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99990 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47288 * 89.99691 * 24 22 20 26 26 H 1.48501 * 109.46900 * 209.99506 * 24 22 20 27 27 H 1.48497 * 109.46809 * 329.99423 * 24 22 20 28 28 C 1.53786 * 87.17350 * 334.52830 * 13 12 10 29 29 C 1.53177 * 109.11399 * 56.94203 * 5 4 2 30 30 C 1.53088 * 109.16033 * 302.97827 * 29 5 4 31 31 O 1.42899 * 109.42068 * 57.60490 * 30 29 5 32 32 H 1.08997 * 109.47125 * 299.98087 * 1 2 3 33 33 H 1.08995 * 109.47252 * 59.98670 * 1 2 3 34 34 H 1.09005 * 109.46614 * 179.97438 * 1 2 3 35 35 H 1.08998 * 109.64048 * 62.52896 * 4 2 1 36 36 H 1.09003 * 109.50459 * 302.27385 * 4 2 1 37 37 H 0.96997 * 120.00540 * 359.97438 * 9 7 5 38 38 H 1.08999 * 113.61181 * 25.51484 * 12 10 9 39 39 H 1.09000 * 113.69133 * 254.62311 * 12 10 9 40 40 H 1.00897 * 111.00180 * 327.42554 * 15 13 12 41 41 H 1.08994 * 109.47448 * 300.00310 * 16 15 13 42 42 H 1.09001 * 109.47145 * 60.00387 * 16 15 13 43 43 H 0.97006 * 119.99894 * 359.97438 * 19 17 16 44 44 H 0.97003 * 119.99751 * 180.02562 * 23 22 20 45 45 H 1.08992 * 113.61675 * 140.02412 * 28 13 12 46 46 H 1.09000 * 113.60973 * 270.92699 * 28 13 12 47 47 H 1.09000 * 109.51744 * 62.88037 * 29 5 4 48 48 H 1.08993 * 109.52391 * 183.06838 * 29 5 4 49 49 H 1.09004 * 109.47980 * 177.59087 * 30 29 5 50 50 H 1.08998 * 109.47846 * 297.62016 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0408 -0.7224 -1.2516 5 6 3.5713 -0.7707 -1.2117 6 1 3.9410 -1.3317 -2.0702 7 6 4.1212 0.6319 -1.2516 8 8 3.3649 1.5782 -1.3096 9 7 5.4533 0.8345 -1.2226 10 6 5.9878 2.1981 -1.2607 11 1 5.2756 2.9419 -0.9034 12 6 7.3845 2.3301 -0.6310 13 6 7.7271 3.2892 -1.7833 14 1 7.4905 4.3314 -1.5688 15 7 9.0851 3.1100 -2.3140 16 6 9.5580 4.3341 -2.9743 17 6 10.9508 4.1124 -3.5053 18 8 11.4957 3.0400 -3.3495 19 7 11.5909 5.1057 -4.1534 20 6 12.8578 4.9039 -4.6370 21 1 13.3430 3.9491 -4.4983 22 6 13.5175 5.9278 -5.3057 23 7 12.9269 7.0895 -5.4749 24 14 15.2440 5.6530 -5.9639 25 1 15.1673 5.1316 -7.3522 26 1 15.9863 6.9391 -5.9585 27 1 15.9508 4.6699 -5.1042 28 6 6.6448 2.5681 -2.6040 29 6 4.0179 -1.4596 0.0814 30 6 3.4307 -0.7089 1.2794 31 8 2.0066 -0.6740 1.1666 32 1 -0.3633 0.5135 0.8901 33 1 -0.3633 0.5140 -0.8898 34 1 -0.3633 -1.0277 -0.0005 35 1 1.7165 -0.1852 -2.1428 36 1 1.6449 -1.7378 -1.2729 37 1 6.0582 0.0777 -1.1757 38 1 7.9601 1.4046 -0.6475 39 1 7.3800 2.8083 0.3484 40 1 9.7225 2.8221 -1.5868 41 1 8.8904 4.5831 -3.7991 42 1 9.5689 5.1535 -2.2557 43 1 11.1550 5.9632 -4.2784 44 1 13.3874 7.8041 -5.9421 45 1 6.0421 3.2387 -3.2165 46 1 7.0186 1.7076 -3.1589 47 1 3.6618 -2.4898 0.0869 48 1 5.1061 -1.4491 0.1427 49 1 3.7100 -1.2197 2.2009 50 1 3.8191 0.3095 1.2960 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317121632.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:18 Heat of formation + Delta-G solvation = -107.764809 kcal Electronic energy + Delta-G solvation = -29184.577937 eV Core-core repulsion = 25018.828213 eV Total energy + Delta-G solvation = -4165.749724 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.09684 -39.54506 -38.34910 -37.85183 -34.75348 -34.19935 -33.82023 -33.11608 -32.25040 -31.20284 -28.28706 -26.99581 -25.86461 -25.39114 -24.25712 -23.39730 -22.51188 -21.52177 -20.39591 -19.58328 -19.11199 -17.89407 -17.09075 -16.88794 -16.63357 -16.43662 -15.94461 -15.50408 -15.42377 -15.23626 -14.80233 -14.52264 -14.39549 -14.22420 -14.04548 -13.54507 -13.38102 -13.02591 -12.88023 -12.76950 -12.57089 -12.53239 -12.36277 -12.24893 -12.07596 -11.77721 -11.57323 -11.47412 -11.28661 -11.17676 -11.03910 -11.00268 -10.78836 -10.65309 -10.40783 -10.23237 -10.07130 -9.56142 -9.52556 -9.21993 -8.47304 -8.11202 -7.97652 -6.43167 -3.84161 2.30372 2.86550 3.16735 3.25417 3.31089 3.46158 3.89180 4.09322 4.14377 4.21996 4.32723 4.34799 4.40538 4.43685 4.53090 4.67916 4.78869 4.83998 4.86096 5.04812 5.08745 5.18047 5.19000 5.24322 5.26884 5.35864 5.36213 5.41343 5.52341 5.54054 5.54452 5.63819 5.64249 5.76741 5.80222 5.84476 5.90607 5.93557 6.00636 6.06346 6.25451 6.38583 6.94804 7.19140 7.25201 7.53652 7.62051 7.92930 8.04687 8.59525 9.16224 9.52722 10.03970 10.74502 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.037036 B = 0.001578 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.846528 B =17742.563259 C =17963.626370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.074 3.926 3 H 0.084 0.916 4 C -0.128 4.128 5 C -0.115 4.115 6 H 0.103 0.897 7 C 0.517 3.483 8 O -0.537 6.537 9 N -0.715 5.715 10 C 0.121 3.879 11 H 0.113 0.887 12 C -0.147 4.147 13 C 0.062 3.938 14 H 0.074 0.926 15 N -0.654 5.654 16 C 0.049 3.951 17 C 0.440 3.560 18 O -0.585 6.585 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C -0.136 4.136 29 C -0.147 4.147 30 C 0.060 3.940 31 O -0.382 6.382 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.401 0.599 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.350 0.650 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.068 0.932 46 H 0.094 0.906 47 H 0.084 0.916 48 H 0.079 0.921 49 H 0.096 0.904 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.092 -13.585 12.024 28.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.017 3.983 3 H 0.102 0.898 4 C -0.166 4.166 5 C -0.136 4.136 6 H 0.121 0.879 7 C 0.303 3.697 8 O -0.415 6.415 9 N -0.365 5.365 10 C 0.015 3.985 11 H 0.131 0.869 12 C -0.186 4.186 13 C -0.049 4.049 14 H 0.092 0.908 15 N -0.287 5.287 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.469 6.469 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.176 4.176 29 C -0.185 4.185 30 C -0.017 4.017 31 O -0.301 6.301 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.236 0.764 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.171 0.829 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.112 0.888 47 H 0.103 0.897 48 H 0.097 0.903 49 H 0.114 0.886 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -22.515 -13.806 11.547 28.825 hybrid contribution 1.420 0.832 -0.053 1.646 sum -21.095 -12.975 11.493 27.303 Atomic orbital electron populations 1.21737 0.93262 1.02469 1.02481 1.22414 0.94973 0.96861 0.84067 0.89819 1.22039 0.92690 1.01882 0.99944 1.21460 0.97836 0.93891 1.00411 0.87909 1.20633 0.82396 0.91285 0.75339 1.90658 1.57520 1.44014 1.49263 1.46015 1.06822 1.09004 1.74650 1.22447 0.94001 0.84129 0.97884 0.86869 1.23597 0.95703 1.01002 0.98298 1.22797 0.90313 0.97343 0.94475 0.90790 1.60208 1.01937 1.32330 1.34187 1.21736 0.96445 0.91142 0.99004 1.19817 0.87458 0.85651 0.84499 1.90517 1.68327 1.25873 1.62196 1.41871 1.15418 1.13313 1.49382 1.19706 0.90802 1.00277 1.32211 0.87922 1.25268 1.00245 0.94891 0.97531 1.69616 1.38678 1.03410 1.42556 0.85849 0.81540 0.77622 0.79218 1.20384 1.20929 1.19435 1.23610 0.96297 1.01289 0.96403 1.22202 1.01466 1.00841 0.93980 1.22530 0.81642 0.99508 0.98001 1.87906 1.20397 1.78254 1.43569 0.91986 0.91038 0.92177 0.90050 0.90531 0.76370 0.88696 0.90816 0.82929 0.89603 0.93789 0.77448 0.91859 0.91338 0.88770 0.89699 0.90286 0.88602 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.57 37.16 0.36 -0.72 16 2 C 0.07 0.68 2.98 -26.59 -0.08 0.60 16 3 H 0.08 0.95 5.81 -51.93 -0.30 0.65 16 4 C -0.13 -0.99 4.58 -26.50 -0.12 -1.11 16 5 C -0.11 -0.80 3.04 -91.59 -0.28 -1.08 16 6 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 7 C 0.52 4.89 5.82 -10.99 -0.06 4.82 16 8 O -0.54 -6.92 13.45 5.55 0.07 -6.84 16 9 N -0.71 -5.77 5.24 -52.88 -0.28 -6.04 16 10 C 0.12 1.13 4.24 -66.97 -0.28 0.85 16 11 H 0.11 1.19 7.46 -51.93 -0.39 0.80 16 12 C -0.15 -1.32 7.42 -25.92 -0.19 -1.51 16 13 C 0.06 0.71 4.12 -66.90 -0.28 0.44 16 14 H 0.07 0.82 7.88 -51.93 -0.41 0.41 16 15 N -0.65 -10.02 6.18 -107.13 -0.66 -10.68 16 16 C 0.05 0.86 6.02 -4.98 -0.03 0.83 16 17 C 0.44 10.31 7.82 -10.99 -0.09 10.22 16 18 O -0.58 -15.72 15.78 5.55 0.09 -15.63 16 19 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 20 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 21 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 24 Si 0.93 20.98 29.55 -169.99 -5.02 15.95 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 C -0.14 -1.51 7.70 -25.77 -0.20 -1.71 16 29 C -0.15 -0.83 5.57 -26.59 -0.15 -0.98 16 30 C 0.06 0.45 6.62 37.20 0.25 0.70 16 31 O -0.38 -3.73 10.41 -35.23 -0.37 -4.10 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.67 8.02 -51.93 -0.42 0.25 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.40 2.39 8.13 -40.82 -0.33 2.06 16 38 H 0.09 0.82 8.12 -51.93 -0.42 0.40 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.35 5.48 8.26 -39.29 -0.32 5.16 16 41 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.04 0.69 8.13 -51.93 -0.42 0.26 16 43 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 44 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.08 0.32 7.50 -51.93 -0.39 -0.07 16 49 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.05 0.41 7.38 -51.93 -0.38 0.03 16 LS Contribution 400.54 15.07 6.04 6.04 Total: -1.00 -33.13 400.54 -9.13 -42.26 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -8.27 Total: 13.78 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -1.40 Total: 3.33 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.27 Total: -54.78 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.20 Total: -26.58 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.13 -9.13 -42.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317121632.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.500 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds